Ggra8289.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8289.t1
Unique NameGgra8289.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length314
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000179_piloncontigtig00000179_pilon:275534..276475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8289Ggra8289Gracilaria gracilis GNS1m malegenetig00000179_pilon 275534..276475 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8289.t1.start1Ggra8289.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000179_pilon 275534..275536 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8289.t1.CDS1Ggra8289.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000179_pilon 275534..276475 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8289.t1.exon1Ggra8289.t1.exon1Gracilaria gracilis GNS1m maleexontig00000179_pilon 275534..276475 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8289.t1.stop1Ggra8289.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000179_pilon 276473..276475 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8289.t1Ggra8289.t1Gracilaria gracilis GNS1m malepolypeptidetig00000179_pilon 275534..276475 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8289.t1 ID=Ggra8289.t1|Name=Ggra8289.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=314bp
MQLQSRRKSTRSHAFMEEEEHTVIQAMDIDKSPPPLTKEELLVEEAFRSL
ECSQDVPEADADAEADAQAKPQSQLKSPLDATSLSEASQSSSEDSDAKLA
KLENIRASRRSARTSNPVRQLDPSHIREASVFGSGPIPSRGAGDIIRNPE
TYLPKILSIRNVRERKEDELKQIREDIEKPTQAQQDEALFASMAKSEQEA
EEMRLAAVKKYSAPVPLFSNSFTIAQMPEKYLVRGGTRKNDDRDTMGDLH
EMVVDVVEAGEKGDRALSILLPTLAANHTLMFAYPLLFTACCTILQCLIA
HRQTLAEDHETSL*
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spliced messenger RNA

>Ggra8289.t1 ID=Ggra8289.t1|Name=Ggra8289.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=942bp|location=Sequence derived from alignment at tig00000179_pilon:275534..276475+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTTGCAGTCGCGCCGCAAATCAACCCGTTCCCATGCCTTCATGGA
AGAGGAGGAGCACACTGTCATTCAAGCTATGGATATAGATAAATCCCCCC
CTCCGCTTACAAAGGAAGAGCTGCTTGTGGAGGAGGCTTTCCGATCGCTG
GAGTGTTCCCAAGATGTTCctgaggctgacgctgacgctgaggctgacgc
CCAAGCTAAGCctcaatctcaactcaaatcacctctagacgcaactTCCT
TGTCCGAAGCTTCCCAATCTTCATCTGAAGACAGTGACGCTAAATTAGCC
AAGCTTGAGAACATCCGCGCTTCAAGGAGATCTGCTCGTACATCCAACCC
TGTGCGACAATTAGATCCTTCACATATTCGCGAGGCGAGCGTTTTTGGTT
CCGGTCCAATTCCCTCAAGGGGGGCTGGAGACATCATCCGCAATCCAGAG
ACATATCTGCCCAAAATTCTCAGCATTCGAAATGTGAGGGAGAGGAAGGA
AGATGAATTAAAGCAGATCAGAGAGGATATTGAGAAACCGACACAGGCGC
AGCAAGACGAGGCGTTGTTTGCTTCTATGGCGAAATCAGAACAGGAGGCT
GAGGAGATGCGTCTTGCCGCTGTGAAGAAGTATTCGGCGCCTGTGCCTTT
GTTCAGCAATTCGTTCACCATTGCCCAAATGCCTGAAAAGTATCTCGTCA
GGGGTGGCACCAGAAAGAATGATGATCGGGACACAATGGGTGACCTTCAT
GAGATGGTTGTGGATGTTGTGGAAGCAGGTGAAAAGGGAGATCGAGCTTT
ATCGATATTGTTACCCACGTTGGCAGCCAACCATACCCTGATGTTCGCAT
ACCCGCTGTTGTTTACCGCATGTTGTACTATCTTGCAGTGTTTGATAGCA
CATCGCCAGACTCTCGCAGAAGATCATGAGACAAGCTTGTAG
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protein sequence of Ggra8289.t1

>Ggra8289.t1 ID=Ggra8289.t1|Name=Ggra8289.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=314bp
MQLQSRRKSTRSHAFMEEEEHTVIQAMDIDKSPPPLTKEELLVEEAFRSL
ECSQDVPEADADAEADAQAKPQSQLKSPLDATSLSEASQSSSEDSDAKLA
KLENIRASRRSARTSNPVRQLDPSHIREASVFGSGPIPSRGAGDIIRNPE
TYLPKILSIRNVRERKEDELKQIREDIEKPTQAQQDEALFASMAKSEQEA
EEMRLAAVKKYSAPVPLFSNSFTIAQMPEKYLVRGGTRKNDDRDTMGDLH
EMVVDVVEAGEKGDRALSILLPTLAANHTLMFAYPLLFTACCTILQCLIA
HRQTLAEDHETSL*
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mRNA from alignment at tig00000179_pilon:275534..276475+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8289.t1 ID=Ggra8289.t1|Name=Ggra8289.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=942bp|location=Sequence derived from alignment at tig00000179_pilon:275534..276475+ (Gracilaria gracilis GNS1m male)
ATGCAGTTGCAGTCGCGCCGCAAATCAACCCGTTCCCATGCCTTCATGGA
AGAGGAGGAGCACACTGTCATTCAAGCTATGGATATAGATAAATCCCCCC
CTCCGCTTACAAAGGAAGAGCTGCTTGTGGAGGAGGCTTTCCGATCGCTG
GAGTGTTCCCAAGATGTTCctgaggctgacgctgacgctgaggctgacgc
CCAAGCTAAGCctcaatctcaactcaaatcacctctagacgcaactTCCT
TGTCCGAAGCTTCCCAATCTTCATCTGAAGACAGTGACGCTAAATTAGCC
AAGCTTGAGAACATCCGCGCTTCAAGGAGATCTGCTCGTACATCCAACCC
TGTGCGACAATTAGATCCTTCACATATTCGCGAGGCGAGCGTTTTTGGTT
CCGGTCCAATTCCCTCAAGGGGGGCTGGAGACATCATCCGCAATCCAGAG
ACATATCTGCCCAAAATTCTCAGCATTCGAAATGTGAGGGAGAGGAAGGA
AGATGAATTAAAGCAGATCAGAGAGGATATTGAGAAACCGACACAGGCGC
AGCAAGACGAGGCGTTGTTTGCTTCTATGGCGAAATCAGAACAGGAGGCT
GAGGAGATGCGTCTTGCCGCTGTGAAGAAGTATTCGGCGCCTGTGCCTTT
GTTCAGCAATTCGTTCACCATTGCCCAAATGCCTGAAAAGTATCTCGTCA
GGGGTGGCACCAGAAAGAATGATGATCGGGACACAATGGGTGACCTTCAT
GAGATGGTTGTGGATGTTGTGGAAGCAGGTGAAAAGGGAGATCGAGCTTT
ATCGATATTGTTACCCACGTTGGCAGCCAACCATACCCTGATGTTCGCAT
ACCCGCTGTTGTTTACCGCATGTTGTACTATCTTGCAGTGTTTGATAGCA
CATCGCCAGACTCTCGCAGAAGATCATGAGACAAGCTTGTAG
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Coding sequence (CDS) from alignment at tig00000179_pilon:275534..276475+

>Ggra8289.t1 ID=Ggra8289.t1|Name=Ggra8289.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=942bp|location=Sequence derived from alignment at tig00000179_pilon:275534..276475+ (Gracilaria gracilis GNS1m male)
ATGCAGTTGCAGTCGCGCCGCAAATCAACCCGTTCCCATGCCTTCATGGA
AGAGGAGGAGCACACTGTCATTCAAGCTATGGATATAGATAAATCCCCCC
CTCCGCTTACAAAGGAAGAGCTGCTTGTGGAGGAGGCTTTCCGATCGCTG
GAGTGTTCCCAAGATGTTCctgaggctgacgctgacgctgaggctgacgc
CCAAGCTAAGCctcaatctcaactcaaatcacctctagacgcaactTCCT
TGTCCGAAGCTTCCCAATCTTCATCTGAAGACAGTGACGCTAAATTAGCC
AAGCTTGAGAACATCCGCGCTTCAAGGAGATCTGCTCGTACATCCAACCC
TGTGCGACAATTAGATCCTTCACATATTCGCGAGGCGAGCGTTTTTGGTT
CCGGTCCAATTCCCTCAAGGGGGGCTGGAGACATCATCCGCAATCCAGAG
ACATATCTGCCCAAAATTCTCAGCATTCGAAATGTGAGGGAGAGGAAGGA
AGATGAATTAAAGCAGATCAGAGAGGATATTGAGAAACCGACACAGGCGC
AGCAAGACGAGGCGTTGTTTGCTTCTATGGCGAAATCAGAACAGGAGGCT
GAGGAGATGCGTCTTGCCGCTGTGAAGAAGTATTCGGCGCCTGTGCCTTT
GTTCAGCAATTCGTTCACCATTGCCCAAATGCCTGAAAAGTATCTCGTCA
GGGGTGGCACCAGAAAGAATGATGATCGGGACACAATGGGTGACCTTCAT
GAGATGGTTGTGGATGTTGTGGAAGCAGGTGAAAAGGGAGATCGAGCTTT
ATCGATATTGTTACCCACGTTGGCAGCCAACCATACCCTGATGTTCGCAT
ACCCGCTGTTGTTTACCGCATGTTGTACTATCTTGCAGTGTTTGATAGCA
CATCGCCAGACTCTCGCAGAAGATCATGAGACAAGCTTGTAG
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