Ggra8233.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8233.t1
Unique NameGgra8233.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length259
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000872_piloncontigtig00000872_pilon:200939..201715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog51511.ENSCSAVP00000019625
Preferred nameIMPACT
PFAMsRWD,UPF0029
Max annot lvl33208|Metazoa
GOsGO:0000122,GO:0000302,GO:0000902,GO:0001932,GO:0001933,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005844,GO:0006355,GO:0006357,GO:0006417,GO:0006446,GO:0006950,GO:0006979,GO:0007154,GO:0007275,GO:0007399,GO:0008092,GO:0008150,GO:0009267,GO:0009268,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009636,GO:0009653,GO:0009719,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010225,GO:0010243,GO:0010447,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010720,GO:0010941,GO:0014070,GO:0016043,GO:0016049,GO:0019219,GO:0019220,GO:0019222,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031333,GO:0031399,GO:0031400,GO:0031667,GO:0031668,GO:0031669,GO:0031952,GO:0031953,GO:0032056,GO:0032058,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0032991,GO:0033554,GO:0034198,GO:0034248,GO:0034250,GO:0034599,GO:0034614,GO:0034644,GO:0035690,GO:0040007,GO:0042149,GO:0042221,GO:0042325,GO:0042326,GO:0042493,GO:0042542,GO:0042594,GO:0043021,GO:0043022,GO:0043254,GO:0043555,GO:0043558,GO:0043618,GO:0043620,GO:0044087,GO:0044877,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045727,GO:0045892,GO:0045934,GO:0045936,GO:0045948,GO:0046677,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048588,GO:0048589,GO:0048666,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051716,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0060548,GO:0060560,GO:0060733,GO:0060992,GO:0065007,GO:0070301,GO:0070887,GO:0071214,GO:0071236,GO:0071262,GO:0071264,GO:0071310,GO:0071407,GO:0071417,GO:0071467,GO:0071468,GO:0071478,GO:0071482,GO:0071494,GO:0071495,GO:0071496,GO:0071840,GO:0072755,GO:0080090,GO:0080134,GO:0080135,GO:0097201,GO:0097237,GO:0104004,GO:0120036,GO:0120039,GO:1901561,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902679,GO:1903506,GO:1903507,GO:1990138,GO:1990253,GO:1990904,GO:1990928,GO:2000026,GO:2000112,GO:2000113,GO:2001141
Evalue8.77e-36
EggNOG OGsCOG1739@1|root,KOG3299@2759|Eukaryota,39UDJ@33154|Opisthokonta,3BE0H@33208|Metazoa,3CXGG@33213|Bilateria,486TU@7711|Chordata
DescriptionImpact RWD domain protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8233Ggra8233Gracilaria gracilis GNS1m malegenetig00000872_pilon 200939..201715 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8233.t1.stop1Ggra8233.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000872_pilon 200939..200941 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8233.t1.CDS1Ggra8233.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000872_pilon 200939..201715 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8233.t1.exon1Ggra8233.t1.exon1Gracilaria gracilis GNS1m maleexontig00000872_pilon 200939..201715 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8233.t1.start1Ggra8233.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000872_pilon 201713..201715 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8233.t1Ggra8233.t1Gracilaria gracilis GNS1m malepolypeptidetig00000872_pilon 200939..201715 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8233.t1 ID=Ggra8233.t1|Name=Ggra8233.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=259bp
MEDEVEAVSAIYGEENVFHSPSTNSMPTTVSILLESCLGKIRISAQIAED
YPTTHPRPTLRSDALSVQQCETLVDMMMERQASKAGEVCLFEYCETMLAL
LLERQDVLGNEIRGEPSAAGERTVGAEHRFKVFHGEPLTDRKSVFQAHLA
FVSSTNDVDGVLTQLCESKKVESATHNMMAWIVGGGEDFDDDGEKGAGKV
VLHVLKQFEARNTLCVVSRWFGGVKLGPARFRHIANVTRDLLNAHQNAVK
RGNVDGAE*
back to top

spliced messenger RNA

>Ggra8233.t1 ID=Ggra8233.t1|Name=Ggra8233.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=777bp|location=Sequence derived from alignment at tig00000872_pilon:200939..201715- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGATGAAGTCGAAGCGGTGTCAGCCATATACGGTGAAGAGAATGT
TTTCCACAGCCCCAGCACTAACTCAATGCCCACCACAGTGTCTATCTTAT
TAGAGTCATGTCTTGGTAAAATCCGGATCTCTGCTCAAATTGCGGAGGAT
TATCCCACGACACATCCGAGGCCAACGCTTAGAAGTGATGCACTTTCTGT
TCAGCAATGCGAGACGCTGGTCGATATGATGATGGAAAGGCAAGCGAGCA
AAGCAGGTGAAGTCTGCTTGTTTGAATATTGCGAAACGATGCTAGCATTG
TTACTAGAACGACAGGATGTGTTGGGAAATGAAATTAGAGGGGAGCCCAG
TGCAGCGGGGGAGAGAACTGTGGGAGCGGAACACAGGTTCAAGGTATTCC
ACGGCGAGCCGCTCACTGACAGGAAGTCAGTGTTTCAAGCACACTTAGCA
TTTGTTTCAAGCACAAATGACGTGGACGGCGTGCTGACGCAACTGTGTGA
GTCAAAGAAGGTGGAAAGCGCGACGCATAATATGATGGCCTGGATTGTTG
GCGGTGGGGAGGATTTTGATGACGATGGAGAGAAGGGGGCTGGAAAGGTT
GTACTGCATGTGCTTAAGCAGTTTGAAGCGCGAAATACCTTGTGCGTTGT
ATCTAGGTGGTTTGGAGGGGTGAAACTAGGTCCGGCGAGATTTCGCCACA
TCGCCAACGTGACCAGGGATCTTCTAAATGCTCATCAGAATGCTGTGAAG
CGCGGAAATGTAGATGGTGCGGAATAG
back to top

protein sequence of Ggra8233.t1

>Ggra8233.t1 ID=Ggra8233.t1|Name=Ggra8233.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=259bp
MEDEVEAVSAIYGEENVFHSPSTNSMPTTVSILLESCLGKIRISAQIAED
YPTTHPRPTLRSDALSVQQCETLVDMMMERQASKAGEVCLFEYCETMLAL
LLERQDVLGNEIRGEPSAAGERTVGAEHRFKVFHGEPLTDRKSVFQAHLA
FVSSTNDVDGVLTQLCESKKVESATHNMMAWIVGGGEDFDDDGEKGAGKV
VLHVLKQFEARNTLCVVSRWFGGVKLGPARFRHIANVTRDLLNAHQNAVK
RGNVDGAE*
back to top

mRNA from alignment at tig00000872_pilon:200939..201715-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8233.t1 ID=Ggra8233.t1|Name=Ggra8233.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=777bp|location=Sequence derived from alignment at tig00000872_pilon:200939..201715- (Gracilaria gracilis GNS1m male)
ATGGAAGATGAAGTCGAAGCGGTGTCAGCCATATACGGTGAAGAGAATGT
TTTCCACAGCCCCAGCACTAACTCAATGCCCACCACAGTGTCTATCTTAT
TAGAGTCATGTCTTGGTAAAATCCGGATCTCTGCTCAAATTGCGGAGGAT
TATCCCACGACACATCCGAGGCCAACGCTTAGAAGTGATGCACTTTCTGT
TCAGCAATGCGAGACGCTGGTCGATATGATGATGGAAAGGCAAGCGAGCA
AAGCAGGTGAAGTCTGCTTGTTTGAATATTGCGAAACGATGCTAGCATTG
TTACTAGAACGACAGGATGTGTTGGGAAATGAAATTAGAGGGGAGCCCAG
TGCAGCGGGGGAGAGAACTGTGGGAGCGGAACACAGGTTCAAGGTATTCC
ACGGCGAGCCGCTCACTGACAGGAAGTCAGTGTTTCAAGCACACTTAGCA
TTTGTTTCAAGCACAAATGACGTGGACGGCGTGCTGACGCAACTGTGTGA
GTCAAAGAAGGTGGAAAGCGCGACGCATAATATGATGGCCTGGATTGTTG
GCGGTGGGGAGGATTTTGATGACGATGGAGAGAAGGGGGCTGGAAAGGTT
GTACTGCATGTGCTTAAGCAGTTTGAAGCGCGAAATACCTTGTGCGTTGT
ATCTAGGTGGTTTGGAGGGGTGAAACTAGGTCCGGCGAGATTTCGCCACA
TCGCCAACGTGACCAGGGATCTTCTAAATGCTCATCAGAATGCTGTGAAG
CGCGGAAATGTAGATGGTGCGGAATAG
back to top

Coding sequence (CDS) from alignment at tig00000872_pilon:200939..201715-

>Ggra8233.t1 ID=Ggra8233.t1|Name=Ggra8233.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=777bp|location=Sequence derived from alignment at tig00000872_pilon:200939..201715- (Gracilaria gracilis GNS1m male)
ATGGAAGATGAAGTCGAAGCGGTGTCAGCCATATACGGTGAAGAGAATGT
TTTCCACAGCCCCAGCACTAACTCAATGCCCACCACAGTGTCTATCTTAT
TAGAGTCATGTCTTGGTAAAATCCGGATCTCTGCTCAAATTGCGGAGGAT
TATCCCACGACACATCCGAGGCCAACGCTTAGAAGTGATGCACTTTCTGT
TCAGCAATGCGAGACGCTGGTCGATATGATGATGGAAAGGCAAGCGAGCA
AAGCAGGTGAAGTCTGCTTGTTTGAATATTGCGAAACGATGCTAGCATTG
TTACTAGAACGACAGGATGTGTTGGGAAATGAAATTAGAGGGGAGCCCAG
TGCAGCGGGGGAGAGAACTGTGGGAGCGGAACACAGGTTCAAGGTATTCC
ACGGCGAGCCGCTCACTGACAGGAAGTCAGTGTTTCAAGCACACTTAGCA
TTTGTTTCAAGCACAAATGACGTGGACGGCGTGCTGACGCAACTGTGTGA
GTCAAAGAAGGTGGAAAGCGCGACGCATAATATGATGGCCTGGATTGTTG
GCGGTGGGGAGGATTTTGATGACGATGGAGAGAAGGGGGCTGGAAAGGTT
GTACTGCATGTGCTTAAGCAGTTTGAAGCGCGAAATACCTTGTGCGTTGT
ATCTAGGTGGTTTGGAGGGGTGAAACTAGGTCCGGCGAGATTTCGCCACA
TCGCCAACGTGACCAGGGATCTTCTAAATGCTCATCAGAATGCTGTGAAG
CGCGGAAATGTAGATGGTGCGGAATAG
back to top