Ggra8184.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8184.t1
Unique NameGgra8184.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length386
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000872_piloncontigtig00000872_pilon:56639..57796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8184Ggra8184Gracilaria gracilis GNS1m malegenetig00000872_pilon 56639..57796 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8184.t1.stop1Ggra8184.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000872_pilon 56639..56641 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8184.t1.CDS1Ggra8184.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000872_pilon 56639..57796 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8184.t1.exon1Ggra8184.t1.exon1Gracilaria gracilis GNS1m maleexontig00000872_pilon 56639..57796 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8184.t1.start1Ggra8184.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000872_pilon 57794..57796 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8184.t1Ggra8184.t1Gracilaria gracilis GNS1m malepolypeptidetig00000872_pilon 56639..57796 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8184.t1 ID=Ggra8184.t1|Name=Ggra8184.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=386bp
MHSPSAFISPISISTSSIAATPVQSSSASPWIAPFPQRSTPRCVRRKKAA
IVRLSAANEAPDESLTGEEEEHQELLKKLNPKELKWSEIPFASVEEELNA
IDEYEREEDLEPDSVWPKFLRGAAYEHWGQPHLALAQYSKVIAGTELSKV
PELWERKAYNSFKIGKVGEANAYCDVALTIYGQSVGNELHFAHWFNANFQ
DYIPKWNGPHANIQRGIIKYCVGNDKTSRECLVSQIALQGEELEHAILWF
LAASVRAATDGIARDWDMKMVRSALGAEYDWDPRLLLFVDLFVAHASGVF
GDVTEIEEKLSNELKNDEGGDIVTKMYIALYHDAFTRDHVERDRALDEVV
ALGGSKNQNDLENFMFCVAKNRLSATSSAESNAFE*
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spliced messenger RNA

>Ggra8184.t1 ID=Ggra8184.t1|Name=Ggra8184.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1158bp|location=Sequence derived from alignment at tig00000872_pilon:56639..57796- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTCCCCCAGCGCGTTCATAAGCCCCATCTCCATTTCGACATCATC
TATTGCTGCAACCCCGGTGCAAAGCTCAAGCGCTTCCCCTTGGATAGCTC
CGTTTCCGCAGCGTTCAACACCCCGATGCGTACGCCGAAAAAAAGCCGCA
ATCGTTCGTCTCAGTGCTGCCAATGAAGCTCCAGATGAATCACTCACAGG
AGAAGAGGAGGAACATCAAGAGCTTCTCAAGAAGCTCAATCCGAAGGAGC
TCAAGTGGTCGGAAATTCCCTTTGCAAGTGTTGAAGAAGAGCTCAATGCT
ATTGATGAGTACGAACGCGAAGAAGATCTAGAACCCGATTCCGTGTGGCC
CAAGTTTCTTCGAGGAGCCGCTTATGAGCATTGGGGTCAGCCACATCTAG
CGCTTGCCCAATATTCCAAAGTGATTGCGGGAACGGAACTGTCCAAAGTA
CCGGAATTATGGGAAAGAAAAGCATACAACTCCTTCAAAATAGGCAAGGT
TGGCGAGGCTAATGCTTATTGTGATGTCGCTCTCACTATCTACGGCCAAA
GTGTTGGTAACGAGCTTCACTTTGCGCATTGGTTCAATGCTAATTTCCAA
GACTACATTCCGAAATGGAATGGGCCACATGCAAATATTCAACGAGGCAT
CATCAAGTACTGCGTGGGCAATGATAAGACTAGTCGTGAGTGCCTCGTCT
CGCAAATTGCTTTGCAAGGCGAGGAGTTGGAACACGCCATCCTATGGTTT
TTGGCCGCTTCCGTGAGAGCGGCTACGGACGGTATTGCACGGGATTGGGA
TATGAAAATGGTTCGTAGCGCGCTTGGAGCGGAATACGATTGGGATCCAC
GACTGCTCCTGTTTGTGGACCTCTTCGTAGCACATGCTAGTGGTGTATTC
GGTGACGTTACAGAGATCGAAGAAAAGCTGTCGAATGAACTCAAAAATGA
CGAAGGCGGTGACATAGTGACCAAAATGTACATAGCACTGTACCATGATG
CGTTTACGAGAGATCACGTAGAGCGCGATCGGGCTCTAGATGAGGTAGTT
GCTCTTGGGGGCTCGAAAAATCAGAACGACCTCGAGAACTTCATGTTCTG
CGTCGCCAAGAATCGTCTTTCTGCGACAAGTTCAGCAGAATCGAACGCTT
TCGAGTGA
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protein sequence of Ggra8184.t1

>Ggra8184.t1 ID=Ggra8184.t1|Name=Ggra8184.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=386bp
MHSPSAFISPISISTSSIAATPVQSSSASPWIAPFPQRSTPRCVRRKKAA
IVRLSAANEAPDESLTGEEEEHQELLKKLNPKELKWSEIPFASVEEELNA
IDEYEREEDLEPDSVWPKFLRGAAYEHWGQPHLALAQYSKVIAGTELSKV
PELWERKAYNSFKIGKVGEANAYCDVALTIYGQSVGNELHFAHWFNANFQ
DYIPKWNGPHANIQRGIIKYCVGNDKTSRECLVSQIALQGEELEHAILWF
LAASVRAATDGIARDWDMKMVRSALGAEYDWDPRLLLFVDLFVAHASGVF
GDVTEIEEKLSNELKNDEGGDIVTKMYIALYHDAFTRDHVERDRALDEVV
ALGGSKNQNDLENFMFCVAKNRLSATSSAESNAFE*
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mRNA from alignment at tig00000872_pilon:56639..57796-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8184.t1 ID=Ggra8184.t1|Name=Ggra8184.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1158bp|location=Sequence derived from alignment at tig00000872_pilon:56639..57796- (Gracilaria gracilis GNS1m male)
ATGCATTCCCCCAGCGCGTTCATAAGCCCCATCTCCATTTCGACATCATC
TATTGCTGCAACCCCGGTGCAAAGCTCAAGCGCTTCCCCTTGGATAGCTC
CGTTTCCGCAGCGTTCAACACCCCGATGCGTACGCCGAAAAAAAGCCGCA
ATCGTTCGTCTCAGTGCTGCCAATGAAGCTCCAGATGAATCACTCACAGG
AGAAGAGGAGGAACATCAAGAGCTTCTCAAGAAGCTCAATCCGAAGGAGC
TCAAGTGGTCGGAAATTCCCTTTGCAAGTGTTGAAGAAGAGCTCAATGCT
ATTGATGAGTACGAACGCGAAGAAGATCTAGAACCCGATTCCGTGTGGCC
CAAGTTTCTTCGAGGAGCCGCTTATGAGCATTGGGGTCAGCCACATCTAG
CGCTTGCCCAATATTCCAAAGTGATTGCGGGAACGGAACTGTCCAAAGTA
CCGGAATTATGGGAAAGAAAAGCATACAACTCCTTCAAAATAGGCAAGGT
TGGCGAGGCTAATGCTTATTGTGATGTCGCTCTCACTATCTACGGCCAAA
GTGTTGGTAACGAGCTTCACTTTGCGCATTGGTTCAATGCTAATTTCCAA
GACTACATTCCGAAATGGAATGGGCCACATGCAAATATTCAACGAGGCAT
CATCAAGTACTGCGTGGGCAATGATAAGACTAGTCGTGAGTGCCTCGTCT
CGCAAATTGCTTTGCAAGGCGAGGAGTTGGAACACGCCATCCTATGGTTT
TTGGCCGCTTCCGTGAGAGCGGCTACGGACGGTATTGCACGGGATTGGGA
TATGAAAATGGTTCGTAGCGCGCTTGGAGCGGAATACGATTGGGATCCAC
GACTGCTCCTGTTTGTGGACCTCTTCGTAGCACATGCTAGTGGTGTATTC
GGTGACGTTACAGAGATCGAAGAAAAGCTGTCGAATGAACTCAAAAATGA
CGAAGGCGGTGACATAGTGACCAAAATGTACATAGCACTGTACCATGATG
CGTTTACGAGAGATCACGTAGAGCGCGATCGGGCTCTAGATGAGGTAGTT
GCTCTTGGGGGCTCGAAAAATCAGAACGACCTCGAGAACTTCATGTTCTG
CGTCGCCAAGAATCGTCTTTCTGCGACAAGTTCAGCAGAATCGAACGCTT
TCGAGTGA
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Coding sequence (CDS) from alignment at tig00000872_pilon:56639..57796-

>Ggra8184.t1 ID=Ggra8184.t1|Name=Ggra8184.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1158bp|location=Sequence derived from alignment at tig00000872_pilon:56639..57796- (Gracilaria gracilis GNS1m male)
ATGCATTCCCCCAGCGCGTTCATAAGCCCCATCTCCATTTCGACATCATC
TATTGCTGCAACCCCGGTGCAAAGCTCAAGCGCTTCCCCTTGGATAGCTC
CGTTTCCGCAGCGTTCAACACCCCGATGCGTACGCCGAAAAAAAGCCGCA
ATCGTTCGTCTCAGTGCTGCCAATGAAGCTCCAGATGAATCACTCACAGG
AGAAGAGGAGGAACATCAAGAGCTTCTCAAGAAGCTCAATCCGAAGGAGC
TCAAGTGGTCGGAAATTCCCTTTGCAAGTGTTGAAGAAGAGCTCAATGCT
ATTGATGAGTACGAACGCGAAGAAGATCTAGAACCCGATTCCGTGTGGCC
CAAGTTTCTTCGAGGAGCCGCTTATGAGCATTGGGGTCAGCCACATCTAG
CGCTTGCCCAATATTCCAAAGTGATTGCGGGAACGGAACTGTCCAAAGTA
CCGGAATTATGGGAAAGAAAAGCATACAACTCCTTCAAAATAGGCAAGGT
TGGCGAGGCTAATGCTTATTGTGATGTCGCTCTCACTATCTACGGCCAAA
GTGTTGGTAACGAGCTTCACTTTGCGCATTGGTTCAATGCTAATTTCCAA
GACTACATTCCGAAATGGAATGGGCCACATGCAAATATTCAACGAGGCAT
CATCAAGTACTGCGTGGGCAATGATAAGACTAGTCGTGAGTGCCTCGTCT
CGCAAATTGCTTTGCAAGGCGAGGAGTTGGAACACGCCATCCTATGGTTT
TTGGCCGCTTCCGTGAGAGCGGCTACGGACGGTATTGCACGGGATTGGGA
TATGAAAATGGTTCGTAGCGCGCTTGGAGCGGAATACGATTGGGATCCAC
GACTGCTCCTGTTTGTGGACCTCTTCGTAGCACATGCTAGTGGTGTATTC
GGTGACGTTACAGAGATCGAAGAAAAGCTGTCGAATGAACTCAAAAATGA
CGAAGGCGGTGACATAGTGACCAAAATGTACATAGCACTGTACCATGATG
CGTTTACGAGAGATCACGTAGAGCGCGATCGGGCTCTAGATGAGGTAGTT
GCTCTTGGGGGCTCGAAAAATCAGAACGACCTCGAGAACTTCATGTTCTG
CGTCGCCAAGAATCGTCTTTCTGCGACAAGTTCAGCAGAATCGAACGCTT
TCGAGTGA
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