Ggra817.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra817.t1
Unique NameGgra817.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length407
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000906_piloncontigtig00000906_pilon:172989..174209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra817Ggra817Gracilaria gracilis GNS1m malegenetig00000906_pilon 172989..174209 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra817.t1.start1Ggra817.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000906_pilon 172989..172991 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra817.t1.CDS1Ggra817.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000906_pilon 172989..174209 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra817.t1.exon1Ggra817.t1.exon1Gracilaria gracilis GNS1m maleexontig00000906_pilon 172989..174209 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra817.t1.stop1Ggra817.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000906_pilon 174207..174209 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra817.t1Ggra817.t1Gracilaria gracilis GNS1m malepolypeptidetig00000906_pilon 172989..174209 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra817.t1 ID=Ggra817.t1|Name=Ggra817.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=407bp
MLHSLKKHAFRLQVPLRAELSPDSESQQLRHHLRQMRRQLQHLLHVQRAS
GALWLRLLHNQRDFSQRMALAYPNRDALWAVCAALRADSSALAERFGTDA
RRDGALLSHVRAQLLRYVRLIAAVEARYARLDALRAEAARYQRKVDALAT
RTPSSSPAVAAAASAWWTRRGGGGAVHDDDDGADAAHEALKARNVAKLQR
ATAEHERMQRDVLTRQRKLFDVHAALFHAALVAFWVAHGGAVDAVAASVG
RARRFVQHEQHKVATLDVERLVEMADGDKAVSAHVGMSDLHALAHDDAQQ
QEEEENEQEEEEEEEDDDDKHKQTQQRERKALGSRSSSSAATAAAAAAGT
GAQGEVAASVEVREVHHIISRASMDECALSPVGVQHTLSHGGDGEQAAAR
AKAAGA*
back to top

spliced messenger RNA

>Ggra817.t1 ID=Ggra817.t1|Name=Ggra817.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1221bp|location=Sequence derived from alignment at tig00000906_pilon:172989..174209+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCACTCGTTGAAGAAGCACGCGTTCCGGCTGCAAGTGCCGCTGCG
CGCCGAGCTATCGCCCGACAGCGAGAGCCAGCAGCTACGGCACCATCTGC
GGCAGATGCGACGGCAGCTACAGCACCTGCTGCACGTGCAGCGCGCGTCG
GGCGCGTTATGGCTGCGACTGCTGCACAACCAGCGCGACTTTTCGCAGCG
CATGGCGCTGGCGTACCCCAACCGCGACGCGCTGTGGGCGGTGTGCGCCG
CGCTGCGCGCCGACAGCAGCGCGTTGGCCGAGCGCTTTGGCACCGACGCG
CGCCGCGACGGCGCGCTGCTGAGCCACGTGCGCGCGCAGCTGCTGCGCTA
CGTGCGGCTGATCGCGGCGGTGGAGGCGCGCTACGCGCGGCTGGACGCGC
TGCGCGCCGAGGCGGCGCGCTACCAGCGCAAGGTGGACGCGCTGGCGACG
CGCACGCCCTCTTCGTCTCcggcggtggcggcggcggccagcgcgtggtg
gacgcggcgcggcggcggcggcgctgtgcacgacgacgacgacggcgccg
acgcggcgCATGAGGCGCTCAAGGCGCGCAACGTGGCCAAGCTGCAGCGC
GCGACGGCGGAGCATGAGCGCATGCAGCGCGACGTGCTGACGCGGCAGCG
CAAGCTGTTCGACGTGCACGCGGCGCTGTTCCACGCGGCGCTGGTGGCGT
TCTGGGTGGCGCATGGCGGCGCCGTGGACGCGGTGGCGGCCAGCGTGGGG
CGCGCGCGGCGCTTCGTGCAGCACGAGCAGCACAAGGTGGCCACGCTGGA
CGTGGAGCGGCTGGTGGAGATGGCGGACGGCGACAAAGCGGTGTCTGCGC
ACGTGGGCATGAGCGATTTGCACGCACTGGCGCACGACGACGCGCagcag
caggaggaagaggagaacgagcaggaagaggaggaggaggaggaggacga
cgacgaCAAGCACAAACAGACGCAACAGCGCGAACGGAAGGCGCTCGGGT
CTCGCTCTTcgtcgtcggcggcgacggcggcggcggcggcggcagggacg
ggggcgcagggcgaggtagcggcgtcggtggaggTGCGCGAGGTGCACCA
CATCATCTCGCGCGCCAGCATGGACGAGTGCGCGCTGTCGCCCGTGGGCG
TGCAGCACACGTTGTCGCACGGCGGCGACGGCGAGCAGGCAGCGGCGCGT
GCCAAAGCAGCCGGCGCGTGA
back to top

protein sequence of Ggra817.t1

>Ggra817.t1 ID=Ggra817.t1|Name=Ggra817.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=407bp
MLHSLKKHAFRLQVPLRAELSPDSESQQLRHHLRQMRRQLQHLLHVQRAS
GALWLRLLHNQRDFSQRMALAYPNRDALWAVCAALRADSSALAERFGTDA
RRDGALLSHVRAQLLRYVRLIAAVEARYARLDALRAEAARYQRKVDALAT
RTPSSSPAVAAAASAWWTRRGGGGAVHDDDDGADAAHEALKARNVAKLQR
ATAEHERMQRDVLTRQRKLFDVHAALFHAALVAFWVAHGGAVDAVAASVG
RARRFVQHEQHKVATLDVERLVEMADGDKAVSAHVGMSDLHALAHDDAQQ
QEEEENEQEEEEEEEDDDDKHKQTQQRERKALGSRSSSSAATAAAAAAGT
GAQGEVAASVEVREVHHIISRASMDECALSPVGVQHTLSHGGDGEQAAAR
AKAAGA*
back to top

mRNA from alignment at tig00000906_pilon:172989..174209+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra817.t1 ID=Ggra817.t1|Name=Ggra817.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1221bp|location=Sequence derived from alignment at tig00000906_pilon:172989..174209+ (Gracilaria gracilis GNS1m male)
ATGCTGCACTCGTTGAAGAAGCACGCGTTCCGGCTGCAAGTGCCGCTGCG
CGCCGAGCTATCGCCCGACAGCGAGAGCCAGCAGCTACGGCACCATCTGC
GGCAGATGCGACGGCAGCTACAGCACCTGCTGCACGTGCAGCGCGCGTCG
GGCGCGTTATGGCTGCGACTGCTGCACAACCAGCGCGACTTTTCGCAGCG
CATGGCGCTGGCGTACCCCAACCGCGACGCGCTGTGGGCGGTGTGCGCCG
CGCTGCGCGCCGACAGCAGCGCGTTGGCCGAGCGCTTTGGCACCGACGCG
CGCCGCGACGGCGCGCTGCTGAGCCACGTGCGCGCGCAGCTGCTGCGCTA
CGTGCGGCTGATCGCGGCGGTGGAGGCGCGCTACGCGCGGCTGGACGCGC
TGCGCGCCGAGGCGGCGCGCTACCAGCGCAAGGTGGACGCGCTGGCGACG
CGCACGCCCTCTTCGTCTCcggcggtggcggcggcggccagcgcgtggtg
gacgcggcgcggcggcggcggcgctgtgcacgacgacgacgacggcgccg
acgcggcgCATGAGGCGCTCAAGGCGCGCAACGTGGCCAAGCTGCAGCGC
GCGACGGCGGAGCATGAGCGCATGCAGCGCGACGTGCTGACGCGGCAGCG
CAAGCTGTTCGACGTGCACGCGGCGCTGTTCCACGCGGCGCTGGTGGCGT
TCTGGGTGGCGCATGGCGGCGCCGTGGACGCGGTGGCGGCCAGCGTGGGG
CGCGCGCGGCGCTTCGTGCAGCACGAGCAGCACAAGGTGGCCACGCTGGA
CGTGGAGCGGCTGGTGGAGATGGCGGACGGCGACAAAGCGGTGTCTGCGC
ACGTGGGCATGAGCGATTTGCACGCACTGGCGCACGACGACGCGCagcag
caggaggaagaggagaacgagcaggaagaggaggaggaggaggaggacga
cgacgaCAAGCACAAACAGACGCAACAGCGCGAACGGAAGGCGCTCGGGT
CTCGCTCTTcgtcgtcggcggcgacggcggcggcggcggcggcagggacg
ggggcgcagggcgaggtagcggcgtcggtggaggTGCGCGAGGTGCACCA
CATCATCTCGCGCGCCAGCATGGACGAGTGCGCGCTGTCGCCCGTGGGCG
TGCAGCACACGTTGTCGCACGGCGGCGACGGCGAGCAGGCAGCGGCGCGT
GCCAAAGCAGCCGGCGCGTGA
back to top

Coding sequence (CDS) from alignment at tig00000906_pilon:172989..174209+

>Ggra817.t1 ID=Ggra817.t1|Name=Ggra817.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1221bp|location=Sequence derived from alignment at tig00000906_pilon:172989..174209+ (Gracilaria gracilis GNS1m male)
ATGCTGCACTCGTTGAAGAAGCACGCGTTCCGGCTGCAAGTGCCGCTGCG
CGCCGAGCTATCGCCCGACAGCGAGAGCCAGCAGCTACGGCACCATCTGC
GGCAGATGCGACGGCAGCTACAGCACCTGCTGCACGTGCAGCGCGCGTCG
GGCGCGTTATGGCTGCGACTGCTGCACAACCAGCGCGACTTTTCGCAGCG
CATGGCGCTGGCGTACCCCAACCGCGACGCGCTGTGGGCGGTGTGCGCCG
CGCTGCGCGCCGACAGCAGCGCGTTGGCCGAGCGCTTTGGCACCGACGCG
CGCCGCGACGGCGCGCTGCTGAGCCACGTGCGCGCGCAGCTGCTGCGCTA
CGTGCGGCTGATCGCGGCGGTGGAGGCGCGCTACGCGCGGCTGGACGCGC
TGCGCGCCGAGGCGGCGCGCTACCAGCGCAAGGTGGACGCGCTGGCGACG
CGCACGCCCTCTTCGTCTCcggcggtggcggcggcggccagcgcgtggtg
gacgcggcgcggcggcggcggcgctgtgcacgacgacgacgacggcgccg
acgcggcgCATGAGGCGCTCAAGGCGCGCAACGTGGCCAAGCTGCAGCGC
GCGACGGCGGAGCATGAGCGCATGCAGCGCGACGTGCTGACGCGGCAGCG
CAAGCTGTTCGACGTGCACGCGGCGCTGTTCCACGCGGCGCTGGTGGCGT
TCTGGGTGGCGCATGGCGGCGCCGTGGACGCGGTGGCGGCCAGCGTGGGG
CGCGCGCGGCGCTTCGTGCAGCACGAGCAGCACAAGGTGGCCACGCTGGA
CGTGGAGCGGCTGGTGGAGATGGCGGACGGCGACAAAGCGGTGTCTGCGC
ACGTGGGCATGAGCGATTTGCACGCACTGGCGCACGACGACGCGCagcag
caggaggaagaggagaacgagcaggaagaggaggaggaggaggaggacga
cgacgaCAAGCACAAACAGACGCAACAGCGCGAACGGAAGGCGCTCGGGT
CTCGCTCTTcgtcgtcggcggcgacggcggcggcggcggcggcagggacg
ggggcgcagggcgaggtagcggcgtcggtggaggTGCGCGAGGTGCACCA
CATCATCTCGCGCGCCAGCATGGACGAGTGCGCGCTGTCGCCCGTGGGCG
TGCAGCACACGTTGTCGCACGGCGGCGACGGCGAGCAGGCAGCGGCGCGT
GCCAAAGCAGCCGGCGCGTGA
back to top