Ggra8119.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8119.t1
Unique NameGgra8119.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length350
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000118_piloncontigtig00000118_pilon:80848..81897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog27923.ML13255a-PA
PFAMszf-MYND
Max annot lvl2759|Eukaryota
Evalue8.05e-20
EggNOG OGs2A8AQ@1|root,2RYG3@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8119Ggra8119Gracilaria gracilis GNS1m malegenetig00000118_pilon 80848..81897 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8119.t1.stop1Ggra8119.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000118_pilon 80848..80850 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8119.t1.CDS1Ggra8119.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000118_pilon 80848..81897 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8119.t1.exon1Ggra8119.t1.exon1Gracilaria gracilis GNS1m maleexontig00000118_pilon 80848..81897 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8119.t1.start1Ggra8119.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000118_pilon 81895..81897 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8119.t1Ggra8119.t1Gracilaria gracilis GNS1m malepolypeptidetig00000118_pilon 80848..81897 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8119.t1 ID=Ggra8119.t1|Name=Ggra8119.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=350bp
MPSPTKIQVEAEAPSPPSPPPPPPTAPSATWFCKACNRKGDPSQGRALKA
CSRCRLARYCHIDCQRRDFAAHKKECKRFCTLRCALRQSTASFESHVDTR
VSVHPRNLFEEARGRFYDVPGAREHCRKLAELGHELEEFAKTYPVVPLLE
KSLAYRLQLLRLNTNDNMGMSELVPFTLLRLRLDGRCVAFIAHWLRVITG
GPDPPSQHETPQRDDWLYGEADPCDDVFPQVGMPPEDAPVPLLIALCIVK
LRLVANMEDGESFREQQRLADAYLHALHRRNDSLLPALINPAPLRERQAP
VLKKIGGPSESYFALLSCYDLFVAVPGAVDRLIRRFGPDPQYDCEMHMW*
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spliced messenger RNA

>Ggra8119.t1 ID=Ggra8119.t1|Name=Ggra8119.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1050bp|location=Sequence derived from alignment at tig00000118_pilon:80848..81897- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCGCCCACCAAAATCCAAGTCGAAGCCGAAGCTCCGTCGCCGCC
GTCGCCGCCGCCGCCGCCGCCCACCGCCCCCAGCGCCACCTGGTTCTGCA
AGGCGTGCAACAGGAAAGGCGACCCCTCACAAGGCCGCGCCCTCAAGGCC
TGCTCGCGCTGTCGTCTCGCGCGCTACTGCCACATTGACTGTCAGCGTCG
CGACTTTGCAGCGCACAAGAAGGAGTGCAAGCGCTTTTGCACGTTGAGGT
GCGCGCTTCGCCAGAGCACGGCGTCGTTCGAGTCGCACGTGGACACCCGC
GTCAGCGTTCATCCCCGCAACCTGTTCGAGGAAGCACGCGGCCGCTTCTA
CGACGTGCCGGGCGCCAGGGAGCACTGCCGCAAGCTCGCGGAGCTGGGCC
ATGAACTGGAGGAGTTTGCGAAGACGTATCCGGTGGTGCCGTTGCTCGAA
AAGTCGTTGGCGTATCGACTGCAGTTACTGCGACTCAACACGAATGACAA
CATGGGCATGAGCGAACTTGTACCCTTCACACTGCTGCGTTTGCGGCTCG
ACGGGCGCTGTGTGGCGTTCATCGCCCACTGGTTACGAGTCATCACAGGC
GGTCCTGACCCGCCTTCGCAGCACGAGACACCTCAGCGCGATGACTGGCT
GTACGGAGAAGCCGATCCTTGTGACGACGTGTTCCCACAAGTTGGAATGC
CGCCCGAGGATGCGCCCGTCCCGCTGCTGATCGCGCTGTGCATCGTGAAA
CTGCGACTCGTCGCCAACATGGAAGATGGCGAGAGTTTCCGGGAGCAGCA
ACGACTCGCGGACGCTTATCTCCATGCCCTGCATCGACGGAACGATTCGT
TGCTGCCCGCGCTGATCAACCCCGCGCCGCTGCGTGAGCGACAAGCGCCG
GTGCTCAAGAAGATTGGCGGCCCTTCGGAGTCGTACTTCGCTCTGCTTAG
CTGCTATGATCTGTTCGTGGCAGTGCCGGGCGCGGTGGATCGGTTGATTC
GCCGCTTTGGACCCGACCCGCAGTACGACTGTGAGATGCACATGTGGTGA
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protein sequence of Ggra8119.t1

>Ggra8119.t1 ID=Ggra8119.t1|Name=Ggra8119.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=350bp
MPSPTKIQVEAEAPSPPSPPPPPPTAPSATWFCKACNRKGDPSQGRALKA
CSRCRLARYCHIDCQRRDFAAHKKECKRFCTLRCALRQSTASFESHVDTR
VSVHPRNLFEEARGRFYDVPGAREHCRKLAELGHELEEFAKTYPVVPLLE
KSLAYRLQLLRLNTNDNMGMSELVPFTLLRLRLDGRCVAFIAHWLRVITG
GPDPPSQHETPQRDDWLYGEADPCDDVFPQVGMPPEDAPVPLLIALCIVK
LRLVANMEDGESFREQQRLADAYLHALHRRNDSLLPALINPAPLRERQAP
VLKKIGGPSESYFALLSCYDLFVAVPGAVDRLIRRFGPDPQYDCEMHMW*
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mRNA from alignment at tig00000118_pilon:80848..81897-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8119.t1 ID=Ggra8119.t1|Name=Ggra8119.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1050bp|location=Sequence derived from alignment at tig00000118_pilon:80848..81897- (Gracilaria gracilis GNS1m male)
ATGCCGTCGCCCACCAAAATCCAAGTCGAAGCCGAAGCTCCGTCGCCGCC
GTCGCCGCCGCCGCCGCCGCCCACCGCCCCCAGCGCCACCTGGTTCTGCA
AGGCGTGCAACAGGAAAGGCGACCCCTCACAAGGCCGCGCCCTCAAGGCC
TGCTCGCGCTGTCGTCTCGCGCGCTACTGCCACATTGACTGTCAGCGTCG
CGACTTTGCAGCGCACAAGAAGGAGTGCAAGCGCTTTTGCACGTTGAGGT
GCGCGCTTCGCCAGAGCACGGCGTCGTTCGAGTCGCACGTGGACACCCGC
GTCAGCGTTCATCCCCGCAACCTGTTCGAGGAAGCACGCGGCCGCTTCTA
CGACGTGCCGGGCGCCAGGGAGCACTGCCGCAAGCTCGCGGAGCTGGGCC
ATGAACTGGAGGAGTTTGCGAAGACGTATCCGGTGGTGCCGTTGCTCGAA
AAGTCGTTGGCGTATCGACTGCAGTTACTGCGACTCAACACGAATGACAA
CATGGGCATGAGCGAACTTGTACCCTTCACACTGCTGCGTTTGCGGCTCG
ACGGGCGCTGTGTGGCGTTCATCGCCCACTGGTTACGAGTCATCACAGGC
GGTCCTGACCCGCCTTCGCAGCACGAGACACCTCAGCGCGATGACTGGCT
GTACGGAGAAGCCGATCCTTGTGACGACGTGTTCCCACAAGTTGGAATGC
CGCCCGAGGATGCGCCCGTCCCGCTGCTGATCGCGCTGTGCATCGTGAAA
CTGCGACTCGTCGCCAACATGGAAGATGGCGAGAGTTTCCGGGAGCAGCA
ACGACTCGCGGACGCTTATCTCCATGCCCTGCATCGACGGAACGATTCGT
TGCTGCCCGCGCTGATCAACCCCGCGCCGCTGCGTGAGCGACAAGCGCCG
GTGCTCAAGAAGATTGGCGGCCCTTCGGAGTCGTACTTCGCTCTGCTTAG
CTGCTATGATCTGTTCGTGGCAGTGCCGGGCGCGGTGGATCGGTTGATTC
GCCGCTTTGGACCCGACCCGCAGTACGACTGTGAGATGCACATGTGGTGA
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Coding sequence (CDS) from alignment at tig00000118_pilon:80848..81897-

>Ggra8119.t1 ID=Ggra8119.t1|Name=Ggra8119.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1050bp|location=Sequence derived from alignment at tig00000118_pilon:80848..81897- (Gracilaria gracilis GNS1m male)
ATGCCGTCGCCCACCAAAATCCAAGTCGAAGCCGAAGCTCCGTCGCCGCC
GTCGCCGCCGCCGCCGCCGCCCACCGCCCCCAGCGCCACCTGGTTCTGCA
AGGCGTGCAACAGGAAAGGCGACCCCTCACAAGGCCGCGCCCTCAAGGCC
TGCTCGCGCTGTCGTCTCGCGCGCTACTGCCACATTGACTGTCAGCGTCG
CGACTTTGCAGCGCACAAGAAGGAGTGCAAGCGCTTTTGCACGTTGAGGT
GCGCGCTTCGCCAGAGCACGGCGTCGTTCGAGTCGCACGTGGACACCCGC
GTCAGCGTTCATCCCCGCAACCTGTTCGAGGAAGCACGCGGCCGCTTCTA
CGACGTGCCGGGCGCCAGGGAGCACTGCCGCAAGCTCGCGGAGCTGGGCC
ATGAACTGGAGGAGTTTGCGAAGACGTATCCGGTGGTGCCGTTGCTCGAA
AAGTCGTTGGCGTATCGACTGCAGTTACTGCGACTCAACACGAATGACAA
CATGGGCATGAGCGAACTTGTACCCTTCACACTGCTGCGTTTGCGGCTCG
ACGGGCGCTGTGTGGCGTTCATCGCCCACTGGTTACGAGTCATCACAGGC
GGTCCTGACCCGCCTTCGCAGCACGAGACACCTCAGCGCGATGACTGGCT
GTACGGAGAAGCCGATCCTTGTGACGACGTGTTCCCACAAGTTGGAATGC
CGCCCGAGGATGCGCCCGTCCCGCTGCTGATCGCGCTGTGCATCGTGAAA
CTGCGACTCGTCGCCAACATGGAAGATGGCGAGAGTTTCCGGGAGCAGCA
ACGACTCGCGGACGCTTATCTCCATGCCCTGCATCGACGGAACGATTCGT
TGCTGCCCGCGCTGATCAACCCCGCGCCGCTGCGTGAGCGACAAGCGCCG
GTGCTCAAGAAGATTGGCGGCCCTTCGGAGTCGTACTTCGCTCTGCTTAG
CTGCTATGATCTGTTCGTGGCAGTGCCGGGCGCGGTGGATCGGTTGATTC
GCCGCTTTGGACCCGACCCGCAGTACGACTGTGAGATGCACATGTGGTGA
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