Ggra8092.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8092.t1
Unique NameGgra8092.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length230
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000867_piloncontigtig00000867_pilon:751156..751921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog717774.Marme_2712
PFAMsLysM
Max annot lvl1236|Gammaproteobacteria
Evalue1.41e-35
EggNOG OGsCOG1388@1|root,COG1388@2|Bacteria,1P9XK@1224|Proteobacteria,1SVF3@1236|Gammaproteobacteria
DescriptionLysM domain
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8092Ggra8092Gracilaria gracilis GNS1m malegenetig00000867_pilon 751156..751921 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8092.t1Ggra8092.t1Gracilaria gracilis GNS1m malepolypeptidetig00000867_pilon 751156..751921 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8092.t1.start1Ggra8092.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000867_pilon 751156..751158 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8092.t1.CDS1Ggra8092.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000867_pilon 751156..751687 +
Ggra8092.t1.CDS2Ggra8092.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000867_pilon 751764..751921 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8092.t1.exon1Ggra8092.t1.exon1Gracilaria gracilis GNS1m maleexontig00000867_pilon 751156..751687 +
Ggra8092.t1.exon2Ggra8092.t1.exon2Gracilaria gracilis GNS1m maleexontig00000867_pilon 751764..751921 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8092.t1.intron1Ggra8092.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000867_pilon 751688..751763 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8092.t1.stop1Ggra8092.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000867_pilon 751919..751921 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8092.t1 ID=Ggra8092.t1|Name=Ggra8092.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=230bp
MRTPFFCSLFFALFAITEAQRYRGHWQKTWRVPSTAFRSANLGFAFSGYS
NVRTALSESRTVYKNLEGSKIITIGGGNYNGGWTRRTIRDVNRAIQKGYF
RNYRGIAYDIEQGDPGLTGMFLSSFKRAKRAGLFVIVTVSHTAPYGFTDA
TTIVNGLLRSRYIDIISPMMYKSGEGYRLPSYHLYGGRIITEGLDLFFEG
MAYQSKDTSRGARWSVENELFSVGFTSGS*
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spliced messenger RNA

>Ggra8092.t1 ID=Ggra8092.t1|Name=Ggra8092.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00000867_pilon:751156..751921+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAACGCCCTTTTTCTGCTCGCTCTTCTTCGCGCTCTTCGCCATCAC
GGAGGCGCAGAGGTACCGCGGTCACTGGCAGAAGACTTGGCGAGTACCTA
GTACCGCCTTCAGGTCAGCCAATCTTGGTTTCGCATTCAGCGGCTACTCC
AATGTACGAACCGCACTTTCCGAGAGCAGAACCGTGTACAAGAACCTTGA
AGGTTCGAAGATCATCACCATTGGTGGTGGTAATTACAATGGAGGCTGGA
CCCGTCGAACCATCCGAGACGTGAACCGCGCCATTCAGAAAGGATATTTT
AGGAACTATCGTGGAATTGCGTACGACATCGAGCAAGGTGATCCTGGTCT
CACGGGAATGTTTTTGTCTTCTTTCAAGCGTGCGAAGAGGGCTGGGTTAT
TCGTCATTGTTACTGTATCACATACAGCCCCATATGGCTTTACAGATGCC
ACTACGATTGTGAATGGGTTGCTGAGAAGTCGATACATTGACATTATCTC
GCCGATGATGTACAAAAGTGGGGAGGGCTATCGGCTGCCGTCGTACCATC
TATATGGCGGCCGAATTATTACAGAAGGGCTAGATCTTTTCTTCGAAGGC
ATGGCGTATCAATCCAAGGATACATCACGTGGTGCTAGATGGTCCGTAGA
AAATGAACTGTTCTCGGTCGGTTTCACATCTGGATCTTAA
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protein sequence of Ggra8092.t1

>Ggra8092.t1 ID=Ggra8092.t1|Name=Ggra8092.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=230bp
MRTPFFCSLFFALFAITEAQRYRGHWQKTWRVPSTAFRSANLGFAFSGYS
NVRTALSESRTVYKNLEGSKIITIGGGNYNGGWTRRTIRDVNRAIQKGYF
RNYRGIAYDIEQGDPGLTGMFLSSFKRAKRAGLFVIVTVSHTAPYGFTDA
TTIVNGLLRSRYIDIISPMMYKSGEGYRLPSYHLYGGRIITEGLDLFFEG
MAYQSKDTSRGARWSVENELFSVGFTSGS*
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mRNA from alignment at tig00000867_pilon:751156..751921+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8092.t1 ID=Ggra8092.t1|Name=Ggra8092.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=766bp|location=Sequence derived from alignment at tig00000867_pilon:751156..751921+ (Gracilaria gracilis GNS1m male)
ATGAGAACGCCCTTTTTCTGCTCGCTCTTCTTCGCGCTCTTCGCCATCAC
GGAGGCGCAGAGGTACCGCGGTCACTGGCAGAAGACTTGGCGAGTACCTA
GTACCGCCTTCAGGTCAGCCAATCTTGGTTTCGCATTCAGCGGCTACTCC
AATGTACGAACCGCACTTTCCGAGAGCAGAACCGTGTACAAGAACCTTGA
AGGTTCGAAGATCATCACCATTGGTGGTGGTAATTACAATGGAGGCTGGA
CCCGTCGAACCATCCGAGACGTGAACCGCGCCATTCAGAAAGGATATTTT
AGGAACTATCGTGGAATTGCGTACGACATCGAGCAAGGTGATCCTGGTCT
CACGGGAATGTTTTTGTCTTCTTTCAAGCGTGCGAAGAGGGCTGGGTTAT
TCGTCATTGTTACTGTATCACATACAGCCCCATATGGCTTTACAGATGCC
ACTACGATTGTGAATGGGTTGCTGAGAAGTCGATACATTGACATTATCTC
GCCGATGATGTACAAAAGTGGGGAGGGCTATCGTGAATGCTCGCAAGCGG
GAGGGCTTGTAACGGAAGCAACCAGGGGTGTTCCTTGGAGTCGATACGCC
CGCAGTAGGGCTGCCGTCGTACCATCTATATGGCGGCCGAATTATTACAG
AAGGGCTAGATCTTTTCTTCGAAGGCATGGCGTATCAATCCAAGGATACA
TCACGTGGTGCTAGATGGTCCGTAGAAAATGAACTGTTCTCGGTCGGTTT
CACATCTGGATCTTAA
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Coding sequence (CDS) from alignment at tig00000867_pilon:751156..751921+

>Ggra8092.t1 ID=Ggra8092.t1|Name=Ggra8092.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=690bp|location=Sequence derived from alignment at tig00000867_pilon:751156..751921+ (Gracilaria gracilis GNS1m male)
ATGAGAACGCCCTTTTTCTGCTCGCTCTTCTTCGCGCTCTTCGCCATCAC
GGAGGCGCAGAGGTACCGCGGTCACTGGCAGAAGACTTGGCGAGTACCTA
GTACCGCCTTCAGGTCAGCCAATCTTGGTTTCGCATTCAGCGGCTACTCC
AATGTACGAACCGCACTTTCCGAGAGCAGAACCGTGTACAAGAACCTTGA
AGGTTCGAAGATCATCACCATTGGTGGTGGTAATTACAATGGAGGCTGGA
CCCGTCGAACCATCCGAGACGTGAACCGCGCCATTCAGAAAGGATATTTT
AGGAACTATCGTGGAATTGCGTACGACATCGAGCAAGGTGATCCTGGTCT
CACGGGAATGTTTTTGTCTTCTTTCAAGCGTGCGAAGAGGGCTGGGTTAT
TCGTCATTGTTACTGTATCACATACAGCCCCATATGGCTTTACAGATGCC
ACTACGATTGTGAATGGGTTGCTGAGAAGTCGATACATTGACATTATCTC
GCCGATGATGTACAAAAGTGGGGAGGGCTATCGGCTGCCGTCGTACCATC
TATATGGCGGCCGAATTATTACAGAAGGGCTAGATCTTTTCTTCGAAGGC
ATGGCGTATCAATCCAAGGATACATCACGTGGTGCTAGATGGTCCGTAGA
AAATGAACTGTTCTCGGTCGGTTTCACATCTGGATCTTAA
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