Ggra8066.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8066.t1
Unique NameGgra8066.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length616
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000867_piloncontigtig00000867_pilon:250212..253879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8066Ggra8066Gracilaria gracilis GNS1m malegenetig00000867_pilon 250212..253879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8066.t1Ggra8066.t1Gracilaria gracilis GNS1m malepolypeptidetig00000867_pilon 250212..253879 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8066.t1.stop1Ggra8066.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000867_pilon 250212..250214 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8066.t1.CDS1Ggra8066.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000867_pilon 250212..250847 -
Ggra8066.t1.CDS2Ggra8066.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000867_pilon 250953..251125 -
Ggra8066.t1.CDS3Ggra8066.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000867_pilon 251201..251262 -
Ggra8066.t1.CDS4Ggra8066.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000867_pilon 252903..253879 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8066.t1.exon1Ggra8066.t1.exon1Gracilaria gracilis GNS1m maleexontig00000867_pilon 250212..250847 -
Ggra8066.t1.exon2Ggra8066.t1.exon2Gracilaria gracilis GNS1m maleexontig00000867_pilon 250953..251125 -
Ggra8066.t1.exon3Ggra8066.t1.exon3Gracilaria gracilis GNS1m maleexontig00000867_pilon 251201..251262 -
Ggra8066.t1.exon4Ggra8066.t1.exon4Gracilaria gracilis GNS1m maleexontig00000867_pilon 252903..253879 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8066.t1.intron1Ggra8066.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000867_pilon 250848..250952 -
Ggra8066.t1.intron2Ggra8066.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000867_pilon 251126..251200 -
Ggra8066.t1.intron3Ggra8066.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000867_pilon 251263..252902 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8066.t1.start1Ggra8066.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000867_pilon 253877..253879 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8066.t1 ID=Ggra8066.t1|Name=Ggra8066.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=616bp
MSTSPAPSQQRSVSPMLPYSLPTSPSPEALRGSSVYSALLQNQLDPLLRT
SPLRFPHCFQRCGAIVSYSDALVLVWATSARTLGTDPLCCKDHRDKSEDY
LLQADNMRLIVQQYFRSGQRSTNNRRIHLFSYELVRAYVLGFFFLVQNEI
QGTIFMILCMLFDCLMVFMLRTCDADHVIGNGVLISFTDQMLYVVDKHNQ
VIHQIPVKCVIGFGGFSYENQERKLLVYPELEEGSHHSSIFLHCFEVMTT
GKPILIGNCADCDGSRALLKEARQRLRALRDIGVLPEFECKLLHPRLYCD
HCLALSPSTIRVTRTNHTDEGGSMSCPTAPASHKPHKPHKPHSQSSGFDM
DFDSDWMESICMGSDAISDECTFILCPNLQLSDAELSNLEDPTEGMCRCI
CCDQLVPTCARQLPESDSVPVFDLACSCEMPESTLQELSLGPDGGAVADC
VETAWLKQHGHATAILRERPSSTVLCMPNMPCGTPGHLLRDCASERRTSC
RLRTYAQICAERGDCRLDFLPVSRLRHSHDWSCIRSATSDGGVLEMTSVS
VFPDSARLSASYVIAFAADVLGSLRLGFVCDFVLLVVLWAERVGERLLKL
LNAFFNARSSVLREL*
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spliced messenger RNA

>Ggra8066.t1 ID=Ggra8066.t1|Name=Ggra8066.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1848bp|location=Sequence derived from alignment at tig00000867_pilon:250212..253879- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTACTTCACCCGCTCCGTCTCAACAGAGAAGTGTTTCACCCATGCT
CCCATACTCACTACCCACATCGCCGAGCCCCGAAGCTCTGAGAGGCTCCT
CGGTATACTCTGCTTTACTTCAAAATCAACTGGACCCGTTACTACGCACC
TCCCCTCTTCGTTTCCCACACTGCTTTCAGCGCTGTGGTGCTATTGTTTC
TTATTCAGACGCACTCGTGTTGGTTTGGGCTACTTCTGCGCGCACTCTAG
GCACAGACCCTCTTTGCTGCAAAGACCATCGCGACAAAAGTGAAGATTAT
CTCCTACAAGCTGACAACATGAGATTGATAGTCCAACAATACTTTCGCTC
AGGGCAACGAAGTACAAACAATCGTCGGATTCATCTCTTTTCCTACGAGC
TCGTTCGCGCTTATGTGTTGGGGTTTTTTTTCTTGGTGCAAAACGAAATT
CAGGGCACAATTTTCATGATACTTTGCATGCTGTTTGACTGTTTGATGGT
ATTTATGTTGCGCACATGTGACGCTGATCATGTGATAGGGAATGGAGTCT
TAATCTCGTTCACGGATCAAATGCTGTATGTTGTTGATAAGCACAACCAA
GTTATACATCAGATCCCAGTTAAATGCGTGATAGGGTTTGGCGGATTTTC
GTATGAGAATCAAGAGAGGAAGTTGCTTGTTTATCCGGAGCTGGAAGAAG
GAAGCCATCATTCGTCAATCTTTTTACATTGTTTCGAAGTGATGACAACA
GGAAAGCCAATTCTGATTGGAAACTGTGCAGACTGCGATGGAAGTCGAGC
TCTCCTCAAGGAAGCACGTCAACGTCTGCGTGCTCTGCGAGATATTGGCG
TGCTTCCAGAATTTGAATGCAAGCTGTTGCACCCCAGATTATACTGTGAC
CATTGCTTGGCTCTTTCTCCTTCCACTATCCGTGTCACACGCACGAATCA
CACAGATGAGGGTGGGTCAATGAGTTGCCCCACGGCGCCCGCCTCCCACA
AACCGCACAAACCGCACAAACCTCATTCTCAATCGTCCGGCTTCGATATG
GATTTCGACTCGGACTGGATGGAAAGCATATGCATGGGTTCGGACGCCAT
CTCAGATGAGTGCACATTCATTTTATGTCCCAACCTCCAATTGTCCGACG
CCGAGCTCAGCAACCTAGAAGATCCGACTGAAGGCATGTGCCGCTGCATA
TGTTGTGATCAATTAGTGCCAACGTGCGCGAGACAGCTTCCCGAGTCAGA
CTCGGTCCCAGTTTTCGATCTCGCCTGCAGCTGTGAAATGCCGGAAAGCA
CATTACAGGAGCTTTCCCTCGGGCCTGACGGCGGCGCCGTAGCAGACTGT
GTCGAAACAGCCTGGCTCAAGCAACACGGGCATGCAACCGCAATTCTACG
TGAACGGCCCTCTTCCACAGTGCTGTGCATGCCGAATATGCCGTGCGGCA
CTCCTGGCCATCTGCTCCGGGACTGTGCCTCAGAACGACGAACGTCCTGC
CGACTGCGCACGTATGCGCAGATCTGCGCGGAGAGAGGCGACTGCCGGCT
TGACTTTTTGCCGGTTTCGCGCTTGAGACACTCGCACGACTGGAGTTGTA
TCCGAAGCGCGACCAGCGATGGAGGTGTGTTGGAGATGACCAGCGTTAGC
GTGTTTCCGGATAGCGCCCGCTTGTCTGCTTCTTATGTTATTGCGTTCGC
TGCTGATGTGTTGGGCTCATTGCGGCTCGGATTTGTGTGTGACTTTGTTC
TGTTAGTCGTGCTATGGGCCGAGAGGGTTGGAGAGCGCCTCTTGAAATTG
TTGAACGCCTTCTTCAACGCTCGTAGCAGCGTGCTTAGGGAGCTATGA
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protein sequence of Ggra8066.t1

>Ggra8066.t1 ID=Ggra8066.t1|Name=Ggra8066.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=616bp
MSTSPAPSQQRSVSPMLPYSLPTSPSPEALRGSSVYSALLQNQLDPLLRT
SPLRFPHCFQRCGAIVSYSDALVLVWATSARTLGTDPLCCKDHRDKSEDY
LLQADNMRLIVQQYFRSGQRSTNNRRIHLFSYELVRAYVLGFFFLVQNEI
QGTIFMILCMLFDCLMVFMLRTCDADHVIGNGVLISFTDQMLYVVDKHNQ
VIHQIPVKCVIGFGGFSYENQERKLLVYPELEEGSHHSSIFLHCFEVMTT
GKPILIGNCADCDGSRALLKEARQRLRALRDIGVLPEFECKLLHPRLYCD
HCLALSPSTIRVTRTNHTDEGGSMSCPTAPASHKPHKPHKPHSQSSGFDM
DFDSDWMESICMGSDAISDECTFILCPNLQLSDAELSNLEDPTEGMCRCI
CCDQLVPTCARQLPESDSVPVFDLACSCEMPESTLQELSLGPDGGAVADC
VETAWLKQHGHATAILRERPSSTVLCMPNMPCGTPGHLLRDCASERRTSC
RLRTYAQICAERGDCRLDFLPVSRLRHSHDWSCIRSATSDGGVLEMTSVS
VFPDSARLSASYVIAFAADVLGSLRLGFVCDFVLLVVLWAERVGERLLKL
LNAFFNARSSVLREL*
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mRNA from alignment at tig00000867_pilon:250212..253879-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8066.t1 ID=Ggra8066.t1|Name=Ggra8066.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3668bp|location=Sequence derived from alignment at tig00000867_pilon:250212..253879- (Gracilaria gracilis GNS1m male)
ATGTCTACTTCACCCGCTCCGTCTCAACAGAGAAGTGTTTCACCCATGCT
CCCATACTCACTACCCACATCGCCGAGCCCCGAAGCTCTGAGAGGCTCCT
CGGTATACTCTGCTTTACTTCAAAATCAACTGGACCCGTTACTACGCACC
TCCCCTCTTCGTTTCCCACACTGCTTTCAGCGCTGTGGTGCTATTGTTTC
TTATTCAGACGCACTCGTGTTGGTTTGGGCTACTTCTGCGCGCACTCTAG
GCACAGACCCTCTTTGCTGCAAAGACCATCGCGACAAAAGTGAAGATTAT
CTCCTACAAGCTGACAACATGAGATTGATAGTCCAACAATACTTTCGCTC
AGGGCAACGAAGTACAAACAATCGTCGGATTCATCTCTTTTCCTACGAGC
TCGTTCGCGCTTATGTGTTGGGGTTTTTTTTCTTGGTGCAAAACGAAATT
CAGGGCACAATTTTCATGATACTTTGCATGCTGTTTGACTGTTTGATGGT
ATTTATGTTGCGCACATGTGACGCTGATCATGTGATAGGGAATGGAGTCT
TAATCTCGTTCACGGATCAAATGCTGTATGTTGTTGATAAGCACAACCAA
GTTATACATCAGATCCCAGTTAAATGCGTGATAGGGTTTGGCGGATTTTC
GTATGAGAATCAAGAGAGGAAGTTGCTTGTTTATCCGGAGCTGGAAGAAG
GAAGCCATCATTCGTCAATCTTTTTACATTGTTTCGAAGTGATGACAACA
GGAAAGCCAATTCTGATTGGAAACTGTGCAGACTGCGATGGAAGTCGAGC
TCTCCTCAAGGAAGCACGTCAACGTCTGCGTGCTCTGCGAGATATTGGCG
TGCTTCCAGAATTTGAATGCAAGCTGTTGCACCCCAGATTATACTGTGAC
CATTGCTTGGCTCTTTCTCCTTCCACTATCCGTGTCACACGCACGAATCA
CACAGATGAGGGTGGGTCAATGAGTTGGTACAATCCATCTCGGTCTGTTT
ATGGTCAAAACGTCATCGGAGATATTATACTGGTGGCGGTTCTTGCGGCA
TCTGTTGGTTTTATACTCGGCATACCTGGGGGAGAGGCTTTCTTGGTAGC
AACTATGCCATGCTTTTTTCCAATGTATCATCGCAATGGCAAAACGTGGA
GTACAGTCACATTTGTATCGAGACGAAAACACCCTTACGTTCTAGACTTG
TTGGTACTTGGATATTGTCGAACACGCTACGTGGTGATGAGTGACATAGA
ATCTGTTCTCTGGAAGGTGCATGCTGCAAAAGTTGTTCGAAATGCCTGTA
ACCGCCCCATTCTTTCGATCGGCTCGAGTATAGACGTGAATAGATGTGAG
CTCGAAATGAGGTTGAAGTCGGGAAGAACCGTTCGTATTCAGTCGTTATC
CATGGGCCAATGTCTGATATTGGCCAGCAATATACGAATTCTCTTGCGAC
GCCAAACATGATTGACAAACGTTCCTCAGGCGGACCATAATGCTTTCGAA
ATTTCGCTTGAGGTGGACGATGTTCGAAAATGCAGAGAATTCAAGGTTAT
GTTACTGGAAGGAGGCTATTCTCTCAAGGATTAAAGAATGTTGTTGTCGT
CACTTTTTCTGGTACACAAATGATCTTATGGGTTCGGAGCAATATGGGGC
AAGTGGCCCCGTGGTGGGGTTTGAAAGTTAGTAGAAACGGCGTCTAGGAC
TTTGGTGTCGAAGGTTGGCGGTTAGTTGTTCAGGTTGGGCTTTTGCAAAA
GCTTTTACGTAATCTAAAACACTGCCTGTACCACCAGGTTTCTATCCGAG
CAGTCTGAGACATTTTGTACTCATTGACATATTGTATGTAGTGGCCTGTG
AGCTGCAGATGACAGACACAAAACATTTGACATTCGTTTGTTTTCTCGCT
CCTAGTTTCGGAACAATTGAAGATGCAAGGATTCACGTAGTCTACAAGCA
TGCATTCAAGAAGACAAGAGTTTCAGATATTAGTTTCAGTAGCACTACTC
CTCTGCAATCCTTCAACGAATAATATGTAAAGATGTTTGAAACAAGCATC
GTTCATGTTTGACCCCCAAATGCCGACGAATTCTGAAAACAAATGTGTCA
AAACTGGTCGCTGCACTACACTACTTCGGAATTACAGCGTGGCCACGTTG
AATACTGGCAGAGTCAGACACGTAATGCAGGTAATGTGACGTGGCCTGTG
TGGAACACGTTGCATCTACGTGGCGGACTAATTATTAAATTAAAATATTT
TGAAGACAAGCAGCGTTGCGAGAAGGGGAACACTGCGCGTGTGAGCGAGC
AAGTTGGTGTCGCCGACGGCAACGAAAGGCGTTACACGCAGCTGCATAGC
GCGAGCGATTGGCGCCGTGTGACGACTTCTCAACGAGCACCATTAAACGC
GCGTCGTGGTTGGCGCATCTGCTCATCGCCCCCCGCCTTGGTCATGGAAC
GCCAAACCCGCCATGCTCACCCACGTCTCGTCCTCATCCATCGTACGGCT
CGTTTTCATTGCGTGCATTCTGCGCGCGTGCAGCTGCGCCCGCGTGCGCG
CCACGCCGCCCTCTACACGCCCGCCGCCCGTCACAGCTTCGCGCGACCCG
CCGCGCCGTCCCGCCAGCCCCACGGCGCCCGCCTCCCACAAACCGCACAA
ACCGCACAAACCTCATTCTCAATCGTCCGGTATGTTTTCAAGCCCTTCGC
GAATGTCACTGTATCGTAGTGCTCACACTCTTCTTGCGCTTTTGCCTCGC
ACAGGCTTCGATATGGATTTCGACTCGGACTGGATGGAAAGCATATGCAT
GGGTTCGGACGCCATCTCAGATGAGTGCACATTCATTTTATGTCCCAACC
TCCAATTGTCCGACGCCGAGCTCAGCAACCTAGAAGATCCGACTGAAGGC
ATGTGCCGCTGCATATGTTGTGATCAAGTAAGTTTTGCAAAACCTTTTGC
CAATATTCTCTCCTTCATCCTTTACACCGTTCTCACCCAAAGCCGTTCTT
ACCTCATTCTGTTCCCTATTCCTGAAACCCAGTTAGTGCCAACGTGCGCG
AGACAGCTTCCCGAGTCAGACTCGGTCCCAGTTTTCGATCTCGCCTGCAG
CTGTGAAATGCCGGAAAGCACATTACAGGAGCTTTCCCTCGGGCCTGACG
GCGGCGCCGTAGCAGACTGTGTCGAAACAGCCTGGCTCAAGCAACACGGG
CATGCAACCGCAATTCTACGTGAACGGCCCTCTTCCACAGTGCTGTGCAT
GCCGAATATGCCGTGCGGCACTCCTGGCCATCTGCTCCGGGACTGTGCCT
CAGAACGACGAACGTCCTGCCGACTGCGCACGTATGCGCAGATCTGCGCG
GAGAGAGGCGACTGCCGGCTTGACTTTTTGCCGGTTTCGCGCTTGAGACA
CTCGCACGACTGGAGTTGTATCCGAAGCGCGACCAGCGATGGAGGTGTGT
TGGAGATGACCAGCGTTAGCGTGTTTCCGGATAGCGCCCGCTTGTCTGCT
TCTTATGTTATTGCGTTCGCTGCTGATGTGTTGGGCTCATTGCGGCTCGG
ATTTGTGTGTGACTTTGTTCTGTTAGTCGTGCTATGGGCCGAGAGGGTTG
GAGAGCGCCTCTTGAAATTGTTGAACGCCTTCTTCAACGCTCGTAGCAGC
GTGCTTAGGGAGCTATGA
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Coding sequence (CDS) from alignment at tig00000867_pilon:250212..253879-

>Ggra8066.t1 ID=Ggra8066.t1|Name=Ggra8066.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1848bp|location=Sequence derived from alignment at tig00000867_pilon:250212..253879- (Gracilaria gracilis GNS1m male)
ATGTCTACTTCACCCGCTCCGTCTCAACAGAGAAGTGTTTCACCCATGCT
CCCATACTCACTACCCACATCGCCGAGCCCCGAAGCTCTGAGAGGCTCCT
CGGTATACTCTGCTTTACTTCAAAATCAACTGGACCCGTTACTACGCACC
TCCCCTCTTCGTTTCCCACACTGCTTTCAGCGCTGTGGTGCTATTGTTTC
TTATTCAGACGCACTCGTGTTGGTTTGGGCTACTTCTGCGCGCACTCTAG
GCACAGACCCTCTTTGCTGCAAAGACCATCGCGACAAAAGTGAAGATTAT
CTCCTACAAGCTGACAACATGAGATTGATAGTCCAACAATACTTTCGCTC
AGGGCAACGAAGTACAAACAATCGTCGGATTCATCTCTTTTCCTACGAGC
TCGTTCGCGCTTATGTGTTGGGGTTTTTTTTCTTGGTGCAAAACGAAATT
CAGGGCACAATTTTCATGATACTTTGCATGCTGTTTGACTGTTTGATGGT
ATTTATGTTGCGCACATGTGACGCTGATCATGTGATAGGGAATGGAGTCT
TAATCTCGTTCACGGATCAAATGCTGTATGTTGTTGATAAGCACAACCAA
GTTATACATCAGATCCCAGTTAAATGCGTGATAGGGTTTGGCGGATTTTC
GTATGAGAATCAAGAGAGGAAGTTGCTTGTTTATCCGGAGCTGGAAGAAG
GAAGCCATCATTCGTCAATCTTTTTACATTGTTTCGAAGTGATGACAACA
GGAAAGCCAATTCTGATTGGAAACTGTGCAGACTGCGATGGAAGTCGAGC
TCTCCTCAAGGAAGCACGTCAACGTCTGCGTGCTCTGCGAGATATTGGCG
TGCTTCCAGAATTTGAATGCAAGCTGTTGCACCCCAGATTATACTGTGAC
CATTGCTTGGCTCTTTCTCCTTCCACTATCCGTGTCACACGCACGAATCA
CACAGATGAGGGTGGGTCAATGAGTTGCCCCACGGCGCCCGCCTCCCACA
AACCGCACAAACCGCACAAACCTCATTCTCAATCGTCCGGCTTCGATATG
GATTTCGACTCGGACTGGATGGAAAGCATATGCATGGGTTCGGACGCCAT
CTCAGATGAGTGCACATTCATTTTATGTCCCAACCTCCAATTGTCCGACG
CCGAGCTCAGCAACCTAGAAGATCCGACTGAAGGCATGTGCCGCTGCATA
TGTTGTGATCAATTAGTGCCAACGTGCGCGAGACAGCTTCCCGAGTCAGA
CTCGGTCCCAGTTTTCGATCTCGCCTGCAGCTGTGAAATGCCGGAAAGCA
CATTACAGGAGCTTTCCCTCGGGCCTGACGGCGGCGCCGTAGCAGACTGT
GTCGAAACAGCCTGGCTCAAGCAACACGGGCATGCAACCGCAATTCTACG
TGAACGGCCCTCTTCCACAGTGCTGTGCATGCCGAATATGCCGTGCGGCA
CTCCTGGCCATCTGCTCCGGGACTGTGCCTCAGAACGACGAACGTCCTGC
CGACTGCGCACGTATGCGCAGATCTGCGCGGAGAGAGGCGACTGCCGGCT
TGACTTTTTGCCGGTTTCGCGCTTGAGACACTCGCACGACTGGAGTTGTA
TCCGAAGCGCGACCAGCGATGGAGGTGTGTTGGAGATGACCAGCGTTAGC
GTGTTTCCGGATAGCGCCCGCTTGTCTGCTTCTTATGTTATTGCGTTCGC
TGCTGATGTGTTGGGCTCATTGCGGCTCGGATTTGTGTGTGACTTTGTTC
TGTTAGTCGTGCTATGGGCCGAGAGGGTTGGAGAGCGCCTCTTGAAATTG
TTGAACGCCTTCTTCAACGCTCGTAGCAGCGTGCTTAGGGAGCTATGA
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