Ggra8059.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8059.t1
Unique NameGgra8059.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length375
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000867_piloncontigtig00000867_pilon:141137..142261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog400682.PAC_15724300
PFAMsCalx-beta,EGF,Sushi,VWA
Max annot lvl33208|Metazoa
KEGG koko:K06238
KEGG Pathwayko04151,ko04510,ko04512,ko04974,ko05165,map04151,map04510,map04512,map04974,map05165
Evalue0.000288
EggNOG OGsKOG1217@1|root,KOG3544@1|root,KOG1217@2759|Eukaryota,KOG3544@2759|Eukaryota,38DGH@33154|Opisthokonta,3BA28@33208|Metazoa
Descriptioncollagen
COG categoryW
BRITEko00000,ko00001,ko00536,ko04147,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8059Ggra8059Gracilaria gracilis GNS1m malegenetig00000867_pilon 141137..142261 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8059.t1.start1Ggra8059.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000867_pilon 141137..141139 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8059.t1.CDS1Ggra8059.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000867_pilon 141137..142261 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8059.t1.exon1Ggra8059.t1.exon1Gracilaria gracilis GNS1m maleexontig00000867_pilon 141137..142261 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8059.t1.stop1Ggra8059.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000867_pilon 142259..142261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8059.t1Ggra8059.t1Gracilaria gracilis GNS1m malepolypeptidetig00000867_pilon 141137..142261 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8059.t1 ID=Ggra8059.t1|Name=Ggra8059.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=375bp
MYRRLFSFAVLAALFAAVFADQRPVNCASPRPSPPPCDRTRCNIGHVCYV
VDQSDSITAQEYAREQTFVRNFAKGAARKSHTPPKNSLVVFSAEAQLAQA
PTAEFEEFDAAVQADRVFYESTAISAGLRLCQQQLRCAEGTKTIVLVSDG
QTSPAEAELTRTAVGEIKDAGINVITAGIGCDANQDFLKEVATSPDMFID
LNVERPCGAALNAIKKICKPVSCPQVTVDPCTPINCQQAFDHCEFTFAGK
NGLATFDVTGRADVSFTPMVISKNPEVHLGVLNMNDLIPEFIDESGVKKI
TEFGTQPFTPTNFKPYPIEGTRGSGIGHESYHANQKQLARNRCVRIFFSQ
VQVLDPTDNLNTVPENYCVVFRTN*
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spliced messenger RNA

>Ggra8059.t1 ID=Ggra8059.t1|Name=Ggra8059.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1125bp|location=Sequence derived from alignment at tig00000867_pilon:141137..142261+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACCGCCGTCTCTTTTCGTTCGCGGTACTCGCCGCCCTTTTCGCCGC
CGTCTTCGCCGACCAACGCCCCGTCAACTGCGCGTCGCCGCGGCCCTCCC
CCCCACCGTGCGACCGCACGCGCTGCAACATCGGCCACGTGTGCTACGTC
GTGGACCAATCCGACTCCATCACCGCGCAAGAGTACGCGCGCGAGCAAAC
CTTCGTGCGCAACTTCGCCAAGGGCGCCGCGCGCAAGTCGCACACGCCGC
CCAAAAACTCGCTCGTCGTCTTCTCCGCTGAAGCCCAGCTCGCACAGGCG
CCCACGGCCGAATTCGAGGAATTCGACGCCGCCGTGCAGGCTGACAGGGT
CTTCTACGAGTCCACCGCCATCTCCGCCGGCCTGCGCCTGTGCCAGCAGC
AGCTGCGTTGCGCGGAGGGCACCAAGACCATCGTGCTCGTCAGCGACGGC
CAGACGTCGCCGGCCGAAGCGGAGCTCACCAGGACCGCTGTCGGTGAAAT
CAAGGACGCTGGAATCAATGTGATCACCGCCGGAATTGGCTGTGACGCCA
ACCAGGACTTCCTCAAGGAGGTCGCCACGTCACCCGACATGTTCATCGAC
CTCAACGTCGAGCGCCCGTGCGGCGCTGCGCTCAACGCGATCAAGAAGAT
CTGCAAGCCTGTATCGTGCCCCCAGGTGACGGTTGACCCGTGCACGCCCA
TCAACTGCCAACAGGCGTTTGATCACTGTGAGTTCACGTTCGCTGGCAAG
AATGGACTGGCTACATTCGATGTCACTGGACGTGCCGATGTCAGTTTCAC
GCCCATGGTCATCTCGAAGAACCCCGAAGTTCACCTCGGTGTGCTCAACA
TGAACGATCTCATCCCGGAGTTCATCGACGAAAGCGGCGTGAAGAAGATC
ACCGAGTTCGGAACCCAGCCCTTCACTCCGACCAACTTCAAGCCGTACCC
AATTGAAGGCACTAGGGGGTCTGGTATTGGACACGAGTCGTACCATGCCA
ACCAGAAACAGCTTGCGCGTAATCGTTGCGTGCGCATTTTCTTCAGTCAA
GTTCAGGTGCTCGACCCAACTGACAACCTGAACACGGTGCCGGAGAACTA
CTGTGTGGTATTCCGTACCAACTAG
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protein sequence of Ggra8059.t1

>Ggra8059.t1 ID=Ggra8059.t1|Name=Ggra8059.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=375bp
MYRRLFSFAVLAALFAAVFADQRPVNCASPRPSPPPCDRTRCNIGHVCYV
VDQSDSITAQEYAREQTFVRNFAKGAARKSHTPPKNSLVVFSAEAQLAQA
PTAEFEEFDAAVQADRVFYESTAISAGLRLCQQQLRCAEGTKTIVLVSDG
QTSPAEAELTRTAVGEIKDAGINVITAGIGCDANQDFLKEVATSPDMFID
LNVERPCGAALNAIKKICKPVSCPQVTVDPCTPINCQQAFDHCEFTFAGK
NGLATFDVTGRADVSFTPMVISKNPEVHLGVLNMNDLIPEFIDESGVKKI
TEFGTQPFTPTNFKPYPIEGTRGSGIGHESYHANQKQLARNRCVRIFFSQ
VQVLDPTDNLNTVPENYCVVFRTN*
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mRNA from alignment at tig00000867_pilon:141137..142261+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8059.t1 ID=Ggra8059.t1|Name=Ggra8059.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1125bp|location=Sequence derived from alignment at tig00000867_pilon:141137..142261+ (Gracilaria gracilis GNS1m male)
ATGTACCGCCGTCTCTTTTCGTTCGCGGTACTCGCCGCCCTTTTCGCCGC
CGTCTTCGCCGACCAACGCCCCGTCAACTGCGCGTCGCCGCGGCCCTCCC
CCCCACCGTGCGACCGCACGCGCTGCAACATCGGCCACGTGTGCTACGTC
GTGGACCAATCCGACTCCATCACCGCGCAAGAGTACGCGCGCGAGCAAAC
CTTCGTGCGCAACTTCGCCAAGGGCGCCGCGCGCAAGTCGCACACGCCGC
CCAAAAACTCGCTCGTCGTCTTCTCCGCTGAAGCCCAGCTCGCACAGGCG
CCCACGGCCGAATTCGAGGAATTCGACGCCGCCGTGCAGGCTGACAGGGT
CTTCTACGAGTCCACCGCCATCTCCGCCGGCCTGCGCCTGTGCCAGCAGC
AGCTGCGTTGCGCGGAGGGCACCAAGACCATCGTGCTCGTCAGCGACGGC
CAGACGTCGCCGGCCGAAGCGGAGCTCACCAGGACCGCTGTCGGTGAAAT
CAAGGACGCTGGAATCAATGTGATCACCGCCGGAATTGGCTGTGACGCCA
ACCAGGACTTCCTCAAGGAGGTCGCCACGTCACCCGACATGTTCATCGAC
CTCAACGTCGAGCGCCCGTGCGGCGCTGCGCTCAACGCGATCAAGAAGAT
CTGCAAGCCTGTATCGTGCCCCCAGGTGACGGTTGACCCGTGCACGCCCA
TCAACTGCCAACAGGCGTTTGATCACTGTGAGTTCACGTTCGCTGGCAAG
AATGGACTGGCTACATTCGATGTCACTGGACGTGCCGATGTCAGTTTCAC
GCCCATGGTCATCTCGAAGAACCCCGAAGTTCACCTCGGTGTGCTCAACA
TGAACGATCTCATCCCGGAGTTCATCGACGAAAGCGGCGTGAAGAAGATC
ACCGAGTTCGGAACCCAGCCCTTCACTCCGACCAACTTCAAGCCGTACCC
AATTGAAGGCACTAGGGGGTCTGGTATTGGACACGAGTCGTACCATGCCA
ACCAGAAACAGCTTGCGCGTAATCGTTGCGTGCGCATTTTCTTCAGTCAA
GTTCAGGTGCTCGACCCAACTGACAACCTGAACACGGTGCCGGAGAACTA
CTGTGTGGTATTCCGTACCAACTAG
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Coding sequence (CDS) from alignment at tig00000867_pilon:141137..142261+

>Ggra8059.t1 ID=Ggra8059.t1|Name=Ggra8059.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1125bp|location=Sequence derived from alignment at tig00000867_pilon:141137..142261+ (Gracilaria gracilis GNS1m male)
ATGTACCGCCGTCTCTTTTCGTTCGCGGTACTCGCCGCCCTTTTCGCCGC
CGTCTTCGCCGACCAACGCCCCGTCAACTGCGCGTCGCCGCGGCCCTCCC
CCCCACCGTGCGACCGCACGCGCTGCAACATCGGCCACGTGTGCTACGTC
GTGGACCAATCCGACTCCATCACCGCGCAAGAGTACGCGCGCGAGCAAAC
CTTCGTGCGCAACTTCGCCAAGGGCGCCGCGCGCAAGTCGCACACGCCGC
CCAAAAACTCGCTCGTCGTCTTCTCCGCTGAAGCCCAGCTCGCACAGGCG
CCCACGGCCGAATTCGAGGAATTCGACGCCGCCGTGCAGGCTGACAGGGT
CTTCTACGAGTCCACCGCCATCTCCGCCGGCCTGCGCCTGTGCCAGCAGC
AGCTGCGTTGCGCGGAGGGCACCAAGACCATCGTGCTCGTCAGCGACGGC
CAGACGTCGCCGGCCGAAGCGGAGCTCACCAGGACCGCTGTCGGTGAAAT
CAAGGACGCTGGAATCAATGTGATCACCGCCGGAATTGGCTGTGACGCCA
ACCAGGACTTCCTCAAGGAGGTCGCCACGTCACCCGACATGTTCATCGAC
CTCAACGTCGAGCGCCCGTGCGGCGCTGCGCTCAACGCGATCAAGAAGAT
CTGCAAGCCTGTATCGTGCCCCCAGGTGACGGTTGACCCGTGCACGCCCA
TCAACTGCCAACAGGCGTTTGATCACTGTGAGTTCACGTTCGCTGGCAAG
AATGGACTGGCTACATTCGATGTCACTGGACGTGCCGATGTCAGTTTCAC
GCCCATGGTCATCTCGAAGAACCCCGAAGTTCACCTCGGTGTGCTCAACA
TGAACGATCTCATCCCGGAGTTCATCGACGAAAGCGGCGTGAAGAAGATC
ACCGAGTTCGGAACCCAGCCCTTCACTCCGACCAACTTCAAGCCGTACCC
AATTGAAGGCACTAGGGGGTCTGGTATTGGACACGAGTCGTACCATGCCA
ACCAGAAACAGCTTGCGCGTAATCGTTGCGTGCGCATTTTCTTCAGTCAA
GTTCAGGTGCTCGACCCAACTGACAACCTGAACACGGTGCCGGAGAACTA
CTGTGTGGTATTCCGTACCAACTAG
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