Ggra7980.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7980.t1
Unique Name	Ggra7980.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	384

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000073_pilon	contig	tig00000073_pilon:566409..567560 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7980	Ggra7980	Gracilaria gracilis GNS1m male	gene	tig00000073_pilon 566409..567560 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7980.t1.start1	Ggra7980.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000073_pilon 566409..566411 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7980.t1.CDS1	Ggra7980.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000073_pilon 566409..567560 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7980.t1.exon1	Ggra7980.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000073_pilon 566409..567560 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7980.t1.stop1	Ggra7980.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000073_pilon 567558..567560 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7980.t1	Ggra7980.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000073_pilon 566409..567560 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000073_pilon:566409..567560+
coding sequence from alignment at tig00000073_pilon:566409..567560+

mRNA sequence

>Ggra7980.t1 ID=Ggra7980.t1|Name=Ggra7980.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=384bp
MSASSPRAPPSLSQRAPPSASDALPADPSAAAIAPPPSTSPCALGVSTPT
TTVTSATNTATTAYNSTPTAENPPSPQFRYASSLHAQPPWRTFSLDHQPL
LAQTYLPSHLYPQQAPAHASHQSSDAASADAATAAAAAAAAAAAAAAAAS
LRNPASTSHAQSTTFSPDSVLQDNQLAVASDYYSHGGGASSAVPASSYWR
ACAEASGACNVTSTVPNCMYDASLTPSHHLLGSSSGAATSNVAAAAALSA
AAAAATHPLPHLPTVQQTVSTAHTSLPDEQLLSAGSALAGTAVLADGATT
TNTSSACTYGDRAGVRWSKEEDDLLLKLSKDVGVVKGKTMKQVAERMAQM
GYRRSHRACQTRRLRLESYTIESRRNQPLQLSE*

spliced messenger RNA

>Ggra7980.t1 ID=Ggra7980.t1|Name=Ggra7980.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1152bp|location=Sequence derived from alignment at tig00000073_pilon:566409..567560+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCGTCGTcgccgcgcgcgccgccgtccctctcgcaacgcgcgcc
gcCGTCGGCTTCCGACGCTCTTCCCGCCGACCCCTCTGCTGCCGCCATAG
CTCCGCCGCCTTCGACATCCCCCTGTGCGCTGGGCGTTTccacccccact
accaccgtcacctccgccaccaacaccgccaccacAGCGTATAACAGCAC
GCCCACGGCCGAAAACCCACCTTCCCCCCAGTTCCGCTACGCTAGTAGCC
TACACGCGCAGCCGCCATGGCGTACGTTTAGCCTGGACCACCAACCGTTG
CTCGCGCAAACCTATTTGCCCTCTCATCTGTACCCGCAACAAGCGCCGGC
GCATGCGTCGCACCAATCGTCCGACGCGGCTAGcgccgacgcggccaccg
ccgccgccgccgcagccgccgcagccgccgccgccgctgccgccgcGTCT
TTACGCAACCCAGCCAGCACGTCGCACGCGCAAAGCACCACTTTTTCGCC
GGATTCGGTGCTGCAAGACAACCAACTGGCCGTTGCGTCCGACTACTACT
CACACGGCGGCGGCGCGTCGTCGGCCGTGCCGGCCAGCTCGTACTGGCGC
GCGTGCGCCGAAGCCAGCGGCGCGTGCAATGTGACAAGCACCGTGCCTAA
CTGCATGTACGACGCATCACTCACGCCGTCGCACCATTTATTAGGCTCGT
CAAGTGGAGCCGCCACGTCCAACGTggcggcagcggccgcgctgtcggcc
gcagccgccgcggcgacgCACCCTCTCCCTCACCTTCCGACAGTGCAACA
AACGGTCAGCACTGCACACACGTCGCTGCCGGACGAGCAGCTTTTATCGG
CAGGCAGTGCGTTGGCGGGCACGGCTGTACTGGCGGACGGCGCTACCACT
ACAAATACATCCAGTGCGTGTACGTATGGCGATCGCGCGGGCGTGCGCTG
GTCGAAGGAGGAGGACGATCTACTACTCAAGCTGTCGAAGGACGTGGGCG
TGGTGAAGGGCAAGACCATGAAACAGGTGGCCGAACGCATGGCGCAGATG
GGCTACCGACGCTCGCACCGCGCGTGTCAGACGCGCCGTCTGCGGTTGGA
ATCGTACACCATCGAATCGCGACGCAATCAACCATTACAGCTTTCCGAAT
AA

protein sequence of Ggra7980.t1

>Ggra7980.t1 ID=Ggra7980.t1|Name=Ggra7980.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=384bp
MSASSPRAPPSLSQRAPPSASDALPADPSAAAIAPPPSTSPCALGVSTPT
TTVTSATNTATTAYNSTPTAENPPSPQFRYASSLHAQPPWRTFSLDHQPL
LAQTYLPSHLYPQQAPAHASHQSSDAASADAATAAAAAAAAAAAAAAAAS
LRNPASTSHAQSTTFSPDSVLQDNQLAVASDYYSHGGGASSAVPASSYWR
ACAEASGACNVTSTVPNCMYDASLTPSHHLLGSSSGAATSNVAAAAALSA
AAAAATHPLPHLPTVQQTVSTAHTSLPDEQLLSAGSALAGTAVLADGATT
TNTSSACTYGDRAGVRWSKEEDDLLLKLSKDVGVVKGKTMKQVAERMAQM
GYRRSHRACQTRRLRLESYTIESRRNQPLQLSE*

mRNA from alignment at tig00000073_pilon:566409..567560+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7980.t1 ID=Ggra7980.t1|Name=Ggra7980.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1152bp|location=Sequence derived from alignment at tig00000073_pilon:566409..567560+ (Gracilaria gracilis GNS1m male)
ATGTCGGCGTCGTcgccgcgcgcgccgccgtccctctcgcaacgcgcgcc
gcCGTCGGCTTCCGACGCTCTTCCCGCCGACCCCTCTGCTGCCGCCATAG
CTCCGCCGCCTTCGACATCCCCCTGTGCGCTGGGCGTTTccacccccact
accaccgtcacctccgccaccaacaccgccaccacAGCGTATAACAGCAC
GCCCACGGCCGAAAACCCACCTTCCCCCCAGTTCCGCTACGCTAGTAGCC
TACACGCGCAGCCGCCATGGCGTACGTTTAGCCTGGACCACCAACCGTTG
CTCGCGCAAACCTATTTGCCCTCTCATCTGTACCCGCAACAAGCGCCGGC
GCATGCGTCGCACCAATCGTCCGACGCGGCTAGcgccgacgcggccaccg
ccgccgccgccgcagccgccgcagccgccgccgccgctgccgccgcGTCT
TTACGCAACCCAGCCAGCACGTCGCACGCGCAAAGCACCACTTTTTCGCC
GGATTCGGTGCTGCAAGACAACCAACTGGCCGTTGCGTCCGACTACTACT
CACACGGCGGCGGCGCGTCGTCGGCCGTGCCGGCCAGCTCGTACTGGCGC
GCGTGCGCCGAAGCCAGCGGCGCGTGCAATGTGACAAGCACCGTGCCTAA
CTGCATGTACGACGCATCACTCACGCCGTCGCACCATTTATTAGGCTCGT
CAAGTGGAGCCGCCACGTCCAACGTggcggcagcggccgcgctgtcggcc
gcagccgccgcggcgacgCACCCTCTCCCTCACCTTCCGACAGTGCAACA
AACGGTCAGCACTGCACACACGTCGCTGCCGGACGAGCAGCTTTTATCGG
CAGGCAGTGCGTTGGCGGGCACGGCTGTACTGGCGGACGGCGCTACCACT
ACAAATACATCCAGTGCGTGTACGTATGGCGATCGCGCGGGCGTGCGCTG
GTCGAAGGAGGAGGACGATCTACTACTCAAGCTGTCGAAGGACGTGGGCG
TGGTGAAGGGCAAGACCATGAAACAGGTGGCCGAACGCATGGCGCAGATG
GGCTACCGACGCTCGCACCGCGCGTGTCAGACGCGCCGTCTGCGGTTGGA
ATCGTACACCATCGAATCGCGACGCAATCAACCATTACAGCTTTCCGAAT
AA

Coding sequence (CDS) from alignment at tig00000073_pilon:566409..567560+

>Ggra7980.t1 ID=Ggra7980.t1|Name=Ggra7980.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1152bp|location=Sequence derived from alignment at tig00000073_pilon:566409..567560+ (Gracilaria gracilis GNS1m male)
ATGTCGGCGTCGTcgccgcgcgcgccgccgtccctctcgcaacgcgcgcc
gcCGTCGGCTTCCGACGCTCTTCCCGCCGACCCCTCTGCTGCCGCCATAG
CTCCGCCGCCTTCGACATCCCCCTGTGCGCTGGGCGTTTccacccccact
accaccgtcacctccgccaccaacaccgccaccacAGCGTATAACAGCAC
GCCCACGGCCGAAAACCCACCTTCCCCCCAGTTCCGCTACGCTAGTAGCC
TACACGCGCAGCCGCCATGGCGTACGTTTAGCCTGGACCACCAACCGTTG
CTCGCGCAAACCTATTTGCCCTCTCATCTGTACCCGCAACAAGCGCCGGC
GCATGCGTCGCACCAATCGTCCGACGCGGCTAGcgccgacgcggccaccg
ccgccgccgccgcagccgccgcagccgccgccgccgctgccgccgcGTCT
TTACGCAACCCAGCCAGCACGTCGCACGCGCAAAGCACCACTTTTTCGCC
GGATTCGGTGCTGCAAGACAACCAACTGGCCGTTGCGTCCGACTACTACT
CACACGGCGGCGGCGCGTCGTCGGCCGTGCCGGCCAGCTCGTACTGGCGC
GCGTGCGCCGAAGCCAGCGGCGCGTGCAATGTGACAAGCACCGTGCCTAA
CTGCATGTACGACGCATCACTCACGCCGTCGCACCATTTATTAGGCTCGT
CAAGTGGAGCCGCCACGTCCAACGTggcggcagcggccgcgctgtcggcc
gcagccgccgcggcgacgCACCCTCTCCCTCACCTTCCGACAGTGCAACA
AACGGTCAGCACTGCACACACGTCGCTGCCGGACGAGCAGCTTTTATCGG
CAGGCAGTGCGTTGGCGGGCACGGCTGTACTGGCGGACGGCGCTACCACT
ACAAATACATCCAGTGCGTGTACGTATGGCGATCGCGCGGGCGTGCGCTG
GTCGAAGGAGGAGGACGATCTACTACTCAAGCTGTCGAAGGACGTGGGCG
TGGTGAAGGGCAAGACCATGAAACAGGTGGCCGAACGCATGGCGCAGATG
GGCTACCGACGCTCGCACCGCGCGTGTCAGACGCGCCGTCTGCGGTTGGA
ATCGTACACCATCGAATCGCGACGCAATCAACCATTACAGCTTTCCGAAT
AA