Ggra7945.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7945.t1
Unique NameGgra7945.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length293
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:494707..495585 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog71139.XP_010045478.1
PFAMsHep_59
Max annot lvl35493|Streptophyta
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0007275,GO:0008150,GO:0009314,GO:0009416,GO:0009628,GO:0009637,GO:0009642,GO:0009644,GO:0009892,GO:0010099,GO:0010605,GO:0016604,GO:0016607,GO:0019222,GO:0022622,GO:0031323,GO:0031324,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0043086,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044092,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0048364,GO:0048519,GO:0048523,GO:0048580,GO:0048583,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051239,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051438,GO:0051444,GO:0055121,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0080022,GO:0080090,GO:0099402,GO:1903320,GO:1903321,GO:1904666,GO:1904667,GO:2000026,GO:2000030
Evalue2.98e-05
EggNOG OGsKOG3345@1|root,KOG3345@2759|Eukaryota,37I0R@33090|Viridiplantae,3G7SN@35493|Streptophyta
Descriptionprotein C9orf78 homolog
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7945Ggra7945Gracilaria gracilis GNS1m malegenetig00000073_pilon 494707..495585 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7945.t1.stop1Ggra7945.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 494707..494709 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7945.t1.CDS1Ggra7945.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 494707..495585 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7945.t1.exon1Ggra7945.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 494707..495585 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7945.t1.start1Ggra7945.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 495583..495585 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7945.t1Ggra7945.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 494707..495585 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7945.t1 ID=Ggra7945.t1|Name=Ggra7945.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=293bp
MGSPEPSLEHREKDKPQKTSSQVQAIEPNTAPLFRTRKRSQKARKKSSKD
RKEHEVDEDERVSRTDLLLIKEAQAMREKTRVAALDTTMTGRKRHSSTQN
PDMRNTSDNVTTIGLRNNFAVERSSNVMDEHMNKYIDEGIREKFGDQQGN
DRTDKSNKLTEENLYAIPEYLKVEDGRQYDPGEGMPAAGVEEIELSDHVR
LKNEMETLQAREKLHDAPSIGNRSESANPGYPKSGHRSSTGYLRDVSTKS
DGERHQQTSQTPRADNTDGKKRRFRHATDNLVADRFRKRWRR*
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spliced messenger RNA

>Ggra7945.t1 ID=Ggra7945.t1|Name=Ggra7945.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=879bp|location=Sequence derived from alignment at tig00000073_pilon:494707..495585- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAGCCCGGAACCAAGCTTAGAACACCGTGAAAAGGACAAGCCACA
GAAGACTTCCTCACAAGTGCAGGCCATCGAGCCAAACACAGCACCTCTGT
TCCGCACTCGAAAGCGCTCTCAAAAAGCCCGAAAGAAGAGCTCCAAGGAC
AGGAAGGAACATGAGGTCGACGAAGACGAAAGAGTATCGAGAACTGATCT
GCTGCTCATAAAGGAAGCTCAAGCAATGCGAGAGAAGACTCGTGTAGCTG
CTCTTGACACTACTATGACGGGCAGGAAAAGGCATTCAAGCACGCAAAAC
CCAGATATGAGGAATACTAGCGACAATGTTACCACAATAGGTCTACGTAA
TAACTTTGCCGTTGAACGATCAAGTAATGTCATGGACGAACATATGAATA
AATACATAGATGAAGGTATACGGGAAAAGTTTGGAGACCAACAAGGTAAT
GACAGAACGGACAAAAGCAATAAGCTGACAGAAGAGAATTTGTACGCTAT
ACCTGAATACTTGAAGGTTGAGGATGGACGGCAATACGATCCCGGCGAAG
GTATGCCAGCTGCAGGTGTAGAAGAAATAGAGCTCTCAGATCATGTTCGC
CTTAAGAATGAGATGGAAACACTTCAGGCCCGTGAAAAGCTGCACGATGC
GCCAAGCATTGGAAATCGATCGGAAAGTGCTAATCCAGGATATCCTAAGA
GTGGGCATCGTTCTAGTACCGGCTATTTACGCGACGTGAGCACCAAGTCT
GATGGAGAAAGACATCAACAAACATCTCAAACTCCCAGAGCCGATAATAC
TGATGGGAAAAAGAGACGTTTCAGACATGCAACTGATAATTTAGTTGCAG
ACCGATTTCGTAAACGATGGCGCCGTTAG
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protein sequence of Ggra7945.t1

>Ggra7945.t1 ID=Ggra7945.t1|Name=Ggra7945.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=293bp
MGSPEPSLEHREKDKPQKTSSQVQAIEPNTAPLFRTRKRSQKARKKSSKD
RKEHEVDEDERVSRTDLLLIKEAQAMREKTRVAALDTTMTGRKRHSSTQN
PDMRNTSDNVTTIGLRNNFAVERSSNVMDEHMNKYIDEGIREKFGDQQGN
DRTDKSNKLTEENLYAIPEYLKVEDGRQYDPGEGMPAAGVEEIELSDHVR
LKNEMETLQAREKLHDAPSIGNRSESANPGYPKSGHRSSTGYLRDVSTKS
DGERHQQTSQTPRADNTDGKKRRFRHATDNLVADRFRKRWRR*
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mRNA from alignment at tig00000073_pilon:494707..495585-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7945.t1 ID=Ggra7945.t1|Name=Ggra7945.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=879bp|location=Sequence derived from alignment at tig00000073_pilon:494707..495585- (Gracilaria gracilis GNS1m male)
ATGGGAAGCCCGGAACCAAGCTTAGAACACCGTGAAAAGGACAAGCCACA
GAAGACTTCCTCACAAGTGCAGGCCATCGAGCCAAACACAGCACCTCTGT
TCCGCACTCGAAAGCGCTCTCAAAAAGCCCGAAAGAAGAGCTCCAAGGAC
AGGAAGGAACATGAGGTCGACGAAGACGAAAGAGTATCGAGAACTGATCT
GCTGCTCATAAAGGAAGCTCAAGCAATGCGAGAGAAGACTCGTGTAGCTG
CTCTTGACACTACTATGACGGGCAGGAAAAGGCATTCAAGCACGCAAAAC
CCAGATATGAGGAATACTAGCGACAATGTTACCACAATAGGTCTACGTAA
TAACTTTGCCGTTGAACGATCAAGTAATGTCATGGACGAACATATGAATA
AATACATAGATGAAGGTATACGGGAAAAGTTTGGAGACCAACAAGGTAAT
GACAGAACGGACAAAAGCAATAAGCTGACAGAAGAGAATTTGTACGCTAT
ACCTGAATACTTGAAGGTTGAGGATGGACGGCAATACGATCCCGGCGAAG
GTATGCCAGCTGCAGGTGTAGAAGAAATAGAGCTCTCAGATCATGTTCGC
CTTAAGAATGAGATGGAAACACTTCAGGCCCGTGAAAAGCTGCACGATGC
GCCAAGCATTGGAAATCGATCGGAAAGTGCTAATCCAGGATATCCTAAGA
GTGGGCATCGTTCTAGTACCGGCTATTTACGCGACGTGAGCACCAAGTCT
GATGGAGAAAGACATCAACAAACATCTCAAACTCCCAGAGCCGATAATAC
TGATGGGAAAAAGAGACGTTTCAGACATGCAACTGATAATTTAGTTGCAG
ACCGATTTCGTAAACGATGGCGCCGTTAG
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Coding sequence (CDS) from alignment at tig00000073_pilon:494707..495585-

>Ggra7945.t1 ID=Ggra7945.t1|Name=Ggra7945.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=879bp|location=Sequence derived from alignment at tig00000073_pilon:494707..495585- (Gracilaria gracilis GNS1m male)
ATGGGAAGCCCGGAACCAAGCTTAGAACACCGTGAAAAGGACAAGCCACA
GAAGACTTCCTCACAAGTGCAGGCCATCGAGCCAAACACAGCACCTCTGT
TCCGCACTCGAAAGCGCTCTCAAAAAGCCCGAAAGAAGAGCTCCAAGGAC
AGGAAGGAACATGAGGTCGACGAAGACGAAAGAGTATCGAGAACTGATCT
GCTGCTCATAAAGGAAGCTCAAGCAATGCGAGAGAAGACTCGTGTAGCTG
CTCTTGACACTACTATGACGGGCAGGAAAAGGCATTCAAGCACGCAAAAC
CCAGATATGAGGAATACTAGCGACAATGTTACCACAATAGGTCTACGTAA
TAACTTTGCCGTTGAACGATCAAGTAATGTCATGGACGAACATATGAATA
AATACATAGATGAAGGTATACGGGAAAAGTTTGGAGACCAACAAGGTAAT
GACAGAACGGACAAAAGCAATAAGCTGACAGAAGAGAATTTGTACGCTAT
ACCTGAATACTTGAAGGTTGAGGATGGACGGCAATACGATCCCGGCGAAG
GTATGCCAGCTGCAGGTGTAGAAGAAATAGAGCTCTCAGATCATGTTCGC
CTTAAGAATGAGATGGAAACACTTCAGGCCCGTGAAAAGCTGCACGATGC
GCCAAGCATTGGAAATCGATCGGAAAGTGCTAATCCAGGATATCCTAAGA
GTGGGCATCGTTCTAGTACCGGCTATTTACGCGACGTGAGCACCAAGTCT
GATGGAGAAAGACATCAACAAACATCTCAAACTCCCAGAGCCGATAATAC
TGATGGGAAAAAGAGACGTTTCAGACATGCAACTGATAATTTAGTTGCAG
ACCGATTTCGTAAACGATGGCGCCGTTAG
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