Ggra7936.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7936.t1
Unique NameGgra7936.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length324
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:469645..470711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7719.XP_002127465.2
Preferred nameRNASEH2A
PFAMsRNase_HII
Max annot lvl33208|Metazoa
KEGG koko:K10743
KEGG Pathwayko03030,map03030
GOsGO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0031974,GO:0031981,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576
Evalue7.9e-72
EggNOG OGsCOG0164@1|root,KOG2299@2759|Eukaryota,38CTA@33154|Opisthokonta,3BF6H@33208|Metazoa,3CWR5@33213|Bilateria,47ZQ8@7711|Chordata
EC3.1.26.4
DescriptionDNA replication, removal of RNA primer
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7936Ggra7936Gracilaria gracilis GNS1m malegenetig00000073_pilon 469645..470711 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7936.t1Ggra7936.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 469645..470711 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7936.t1.stop1Ggra7936.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 469645..469647 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7936.t1.CDS1Ggra7936.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 469645..469855 -
Ggra7936.t1.CDS2Ggra7936.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000073_pilon 469951..470711 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7936.t1.exon1Ggra7936.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 469645..469855 -
Ggra7936.t1.exon2Ggra7936.t1.exon2Gracilaria gracilis GNS1m maleexontig00000073_pilon 469951..470711 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7936.t1.intron1Ggra7936.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000073_pilon 469856..469950 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7936.t1.start1Ggra7936.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 470709..470711 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7936.t1 ID=Ggra7936.t1|Name=Ggra7936.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=324bp
MCEEKREVWQPGVPCVLGIDEAGRGPVLGPMVYAAAVCPKSHTSSLRALG
VNDSKSFKEDQRDKLRSKIEGASFVRVFESALTAEYLSSHMLRKEKYNLN
LISHDAALGLVQNAINEGINVTEIYVDTVGNADHYAAKFRERFPSVDKVV
VAKKADSTYPIVGAASIMAKTTRDSHIREWCFPEEQRSVEFEPDDANKRV
DFIGPRGSGYPSDPLTKTWMDNNCDNLFGFPTFVRFSWGTTKTILQQNAV
QVDWECEEEEEDGKPRKAAKVKPVKTKDIKSFFSPKPKSSAALPSKRRKL
AGVSCPMPQVLQSMALRRAPGLI*
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spliced messenger RNA

>Ggra7936.t1 ID=Ggra7936.t1|Name=Ggra7936.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=972bp|location=Sequence derived from alignment at tig00000073_pilon:469645..470711- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTGAAGAAAAACGTGAGGTATGGCAACCCGGTGTGCCATGCGTGCT
TGGTATCGACGAAGCCGGACGGGGACCAGTACTCGGTCCAATGGTGTATG
CTGCTGCTGTGTGCCCAAAATCACACACAAGCAGTCTACGGGCTCTAGGT
GTAAACGATTCCAAGTCGTTTAAAGAAGACCAAAGGGACAAGCTTCGCAG
TAAGATTGAAGGAGCATCTTTCGTCAGGGTATTTGAGAGCGCTTTGACAG
CTGAGTACTTGAGTAGCCATATGCTGCGAAAAGAGAAGTATAACCTCAAC
CTTATATCACATGATGCAGCACTAGGGTTGGTTCAAAACGCTATAAATGA
AGGAATCAATGTCACTGAGATTTACGTTGACACGGTAGGCAATGCAGATC
ACTATGCAGCAAAGTTTCGCGAACGCTTTCCGTCCGTTGATAAAGTTGTC
GTCGCAAAGAAGGCTGATTCCACCTATCCTATTGTGGGAGCTGCAAGCAT
CATGGCGAAGACAACAAGGGACAGCCATATCAGGGAATGGTGCTTTCCAG
AAGAGCAACGCAGTGTGGAATTTGAGCCAGATGATGCAAATAAGCGAGTG
GACTTCATCGGACCACGAGGAAGTGGTTATCCGAGCGACCCTCTTACTAA
AACCTGGATGGATAATAACTGTGACAATCTCTTTGGCTTTCCCACTTTCG
TCCGGTTCTCCTGGGGTACCACAAAAACAATCCTGCAGCAGAACGCAGTG
CAAGTTGATTGGGAATGTGAAGAAGAAGAAGAAGACGGCAAACCACGAAA
AGCAGCGAAAGTCAAACCAGTGAAGACGAAGGACATCAAATCCTTCTTTT
CGCCAAAGCCTAAGTCTTCGGCAGCACTGCCTTCGAAGAGACGTAAACTT
GCCGGAGTTTCATGTCCGATGCCTCAGGTGCTTCAGTCTATGGCTCTTCG
GCGTGCCCCAGGCTTAATCTAA
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protein sequence of Ggra7936.t1

>Ggra7936.t1 ID=Ggra7936.t1|Name=Ggra7936.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=324bp
MCEEKREVWQPGVPCVLGIDEAGRGPVLGPMVYAAAVCPKSHTSSLRALG
VNDSKSFKEDQRDKLRSKIEGASFVRVFESALTAEYLSSHMLRKEKYNLN
LISHDAALGLVQNAINEGINVTEIYVDTVGNADHYAAKFRERFPSVDKVV
VAKKADSTYPIVGAASIMAKTTRDSHIREWCFPEEQRSVEFEPDDANKRV
DFIGPRGSGYPSDPLTKTWMDNNCDNLFGFPTFVRFSWGTTKTILQQNAV
QVDWECEEEEEDGKPRKAAKVKPVKTKDIKSFFSPKPKSSAALPSKRRKL
AGVSCPMPQVLQSMALRRAPGLI*
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mRNA from alignment at tig00000073_pilon:469645..470711-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7936.t1 ID=Ggra7936.t1|Name=Ggra7936.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1067bp|location=Sequence derived from alignment at tig00000073_pilon:469645..470711- (Gracilaria gracilis GNS1m male)
ATGTGTGAAGAAAAACGTGAGGTATGGCAACCCGGTGTGCCATGCGTGCT
TGGTATCGACGAAGCCGGACGGGGACCAGTACTCGGTCCAATGGTGTATG
CTGCTGCTGTGTGCCCAAAATCACACACAAGCAGTCTACGGGCTCTAGGT
GTAAACGATTCCAAGTCGTTTAAAGAAGACCAAAGGGACAAGCTTCGCAG
TAAGATTGAAGGAGCATCTTTCGTCAGGGTATTTGAGAGCGCTTTGACAG
CTGAGTACTTGAGTAGCCATATGCTGCGAAAAGAGAAGTATAACCTCAAC
CTTATATCACATGATGCAGCACTAGGGTTGGTTCAAAACGCTATAAATGA
AGGAATCAATGTCACTGAGATTTACGTTGACACGGTAGGCAATGCAGATC
ACTATGCAGCAAAGTTTCGCGAACGCTTTCCGTCCGTTGATAAAGTTGTC
GTCGCAAAGAAGGCTGATTCCACCTATCCTATTGTGGGAGCTGCAAGCAT
CATGGCGAAGACAACAAGGGACAGCCATATCAGGGAATGGTGCTTTCCAG
AAGAGCAACGCAGTGTGGAATTTGAGCCAGATGATGCAAATAAGCGAGTG
GACTTCATCGGACCACGAGGAAGTGGTTATCCGAGCGACCCTCTTACTAA
AACCTGGATGGATAATAACTGTGACAATCTCTTTGGCTTTCCCACTTTCG
TCCGGTTCTCCTGGGGTACCACAAAAACAATCCTGCAGCAGAACGCAGTG
CAAGTTGATTGGTACGTAGCACAAGAATGCATTACAAAGCGCGCGTTCTG
TGAAAGCATGATTGTACTATATTACTAACTTACGAACTCTTTCGATTCAT
TTGAAGGGAATGTGAAGAAGAAGAAGAAGACGGCAAACCACGAAAAGCAG
CGAAAGTCAAACCAGTGAAGACGAAGGACATCAAATCCTTCTTTTCGCCA
AAGCCTAAGTCTTCGGCAGCACTGCCTTCGAAGAGACGTAAACTTGCCGG
AGTTTCATGTCCGATGCCTCAGGTGCTTCAGTCTATGGCTCTTCGGCGTG
CCCCAGGCTTAATCTAA
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Coding sequence (CDS) from alignment at tig00000073_pilon:469645..470711-

>Ggra7936.t1 ID=Ggra7936.t1|Name=Ggra7936.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=972bp|location=Sequence derived from alignment at tig00000073_pilon:469645..470711- (Gracilaria gracilis GNS1m male)
ATGTGTGAAGAAAAACGTGAGGTATGGCAACCCGGTGTGCCATGCGTGCT
TGGTATCGACGAAGCCGGACGGGGACCAGTACTCGGTCCAATGGTGTATG
CTGCTGCTGTGTGCCCAAAATCACACACAAGCAGTCTACGGGCTCTAGGT
GTAAACGATTCCAAGTCGTTTAAAGAAGACCAAAGGGACAAGCTTCGCAG
TAAGATTGAAGGAGCATCTTTCGTCAGGGTATTTGAGAGCGCTTTGACAG
CTGAGTACTTGAGTAGCCATATGCTGCGAAAAGAGAAGTATAACCTCAAC
CTTATATCACATGATGCAGCACTAGGGTTGGTTCAAAACGCTATAAATGA
AGGAATCAATGTCACTGAGATTTACGTTGACACGGTAGGCAATGCAGATC
ACTATGCAGCAAAGTTTCGCGAACGCTTTCCGTCCGTTGATAAAGTTGTC
GTCGCAAAGAAGGCTGATTCCACCTATCCTATTGTGGGAGCTGCAAGCAT
CATGGCGAAGACAACAAGGGACAGCCATATCAGGGAATGGTGCTTTCCAG
AAGAGCAACGCAGTGTGGAATTTGAGCCAGATGATGCAAATAAGCGAGTG
GACTTCATCGGACCACGAGGAAGTGGTTATCCGAGCGACCCTCTTACTAA
AACCTGGATGGATAATAACTGTGACAATCTCTTTGGCTTTCCCACTTTCG
TCCGGTTCTCCTGGGGTACCACAAAAACAATCCTGCAGCAGAACGCAGTG
CAAGTTGATTGGGAATGTGAAGAAGAAGAAGAAGACGGCAAACCACGAAA
AGCAGCGAAAGTCAAACCAGTGAAGACGAAGGACATCAAATCCTTCTTTT
CGCCAAAGCCTAAGTCTTCGGCAGCACTGCCTTCGAAGAGACGTAAACTT
GCCGGAGTTTCATGTCCGATGCCTCAGGTGCTTCAGTCTATGGCTCTTCG
GCGTGCCCCAGGCTTAATCTAA
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