Ggra7935.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7935.t1
Unique NameGgra7935.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length242
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:468842..469567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog391625.PPSIR1_40195
PFAMsMetallophos,Metallophos_2
Max annot lvl1224|Proteobacteria
Evalue1.86e-49
EggNOG OGsCOG2129@1|root,COG2129@2|Bacteria,1RFU9@1224|Proteobacteria
Descriptionphosphoesterases, related to the Icc protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7935Ggra7935Gracilaria gracilis GNS1m malegenetig00000073_pilon 468842..469567 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7935.t1.start1Ggra7935.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 468842..468844 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7935.t1.CDS1Ggra7935.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 468842..469567 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7935.t1.exon1Ggra7935.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 468842..469567 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7935.t1.stop1Ggra7935.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 469565..469567 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7935.t1Ggra7935.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 468842..469567 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7935.t1 ID=Ggra7935.t1|Name=Ggra7935.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=242bp
MLPVLGRPELPFFFICVALLIVYRVLNEPDTMSASKQSLRLVILSDTHRQ
FRRPVPDGDILVHCGDSEWRVDEINDWTSKLPHTNKIFVSGNMDRQFRGK
TDEFRGVSYLQDALMEVNGLKIYGSPWTPEFVGEFQLGDKRQAEDVWNRV
PKEVDILITHGPPRGILDTTSRGLRVGDAVLLEKVREVKPRVHCFGHVHE
SYGAVMSDGPTLFCNAAVFNGQAPLVVDIPLDHTKPARVVS*
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spliced messenger RNA

>Ggra7935.t1 ID=Ggra7935.t1|Name=Ggra7935.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=726bp|location=Sequence derived from alignment at tig00000073_pilon:468842..469567+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCCCGTTCTAGGTCGTCCCGAACTCCCATTCTTTTTTATCTGCGT
TGCACTCCTTATTGTTTACCGTGTTCTAAATGAACCCGATACAATGTCAG
CATCAAAACAATCGCTGAGATTAGTAATCCTGTCAGACACACACCGCCAA
TTTCGTCGTCCTGTACCAGATGGTGACATCCTTGTTCATTGCGGAGATTC
AGAGTGGCGAGTGGACGAGATAAATGATTGGACATCAAAGCTTCCTCACA
CAAACAAGATATTTGTATCCGGTAATATGGACAGACAGTTCAGGGGTAAG
ACCGATGAATTCCGAGGTGTTTCATACCTGCAGGATGCATTGATGGAGGT
CAATGGATTGAAAATCTATGGCTCGCCATGGACGCCAGAGTTTGTCGGTG
AGTTCCAGTTGGGCGACAAAAGGCAAGCAGAAGATGTTTGGAATCGGGTT
CCGAAAGAAGTCGATATTCTTATAACCCATGGCCCTCCCCGGGGCATCCT
TGACACTACTAGTCGTGGTCTCCGCGTTGGAGATGCAGTTCTCTTAGAAA
AAGTGCGTGAAGTGAAACCGCGTGTCCATTGCTTCGGCCATGTGCATGAG
AGTTATGGGGCAGTGATGAGTGACGGCCCAACGCTCTTCTGTAACGCTGC
AGTATTCAACGGTCAGGCACCTCTTGTCGTTGACATACCATTAGATCACA
CGAAACCTGCTCGGGTTGTTAGTTAG
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protein sequence of Ggra7935.t1

>Ggra7935.t1 ID=Ggra7935.t1|Name=Ggra7935.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=242bp
MLPVLGRPELPFFFICVALLIVYRVLNEPDTMSASKQSLRLVILSDTHRQ
FRRPVPDGDILVHCGDSEWRVDEINDWTSKLPHTNKIFVSGNMDRQFRGK
TDEFRGVSYLQDALMEVNGLKIYGSPWTPEFVGEFQLGDKRQAEDVWNRV
PKEVDILITHGPPRGILDTTSRGLRVGDAVLLEKVREVKPRVHCFGHVHE
SYGAVMSDGPTLFCNAAVFNGQAPLVVDIPLDHTKPARVVS*
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mRNA from alignment at tig00000073_pilon:468842..469567+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7935.t1 ID=Ggra7935.t1|Name=Ggra7935.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=726bp|location=Sequence derived from alignment at tig00000073_pilon:468842..469567+ (Gracilaria gracilis GNS1m male)
ATGCTTCCCGTTCTAGGTCGTCCCGAACTCCCATTCTTTTTTATCTGCGT
TGCACTCCTTATTGTTTACCGTGTTCTAAATGAACCCGATACAATGTCAG
CATCAAAACAATCGCTGAGATTAGTAATCCTGTCAGACACACACCGCCAA
TTTCGTCGTCCTGTACCAGATGGTGACATCCTTGTTCATTGCGGAGATTC
AGAGTGGCGAGTGGACGAGATAAATGATTGGACATCAAAGCTTCCTCACA
CAAACAAGATATTTGTATCCGGTAATATGGACAGACAGTTCAGGGGTAAG
ACCGATGAATTCCGAGGTGTTTCATACCTGCAGGATGCATTGATGGAGGT
CAATGGATTGAAAATCTATGGCTCGCCATGGACGCCAGAGTTTGTCGGTG
AGTTCCAGTTGGGCGACAAAAGGCAAGCAGAAGATGTTTGGAATCGGGTT
CCGAAAGAAGTCGATATTCTTATAACCCATGGCCCTCCCCGGGGCATCCT
TGACACTACTAGTCGTGGTCTCCGCGTTGGAGATGCAGTTCTCTTAGAAA
AAGTGCGTGAAGTGAAACCGCGTGTCCATTGCTTCGGCCATGTGCATGAG
AGTTATGGGGCAGTGATGAGTGACGGCCCAACGCTCTTCTGTAACGCTGC
AGTATTCAACGGTCAGGCACCTCTTGTCGTTGACATACCATTAGATCACA
CGAAACCTGCTCGGGTTGTTAGTTAG
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Coding sequence (CDS) from alignment at tig00000073_pilon:468842..469567+

>Ggra7935.t1 ID=Ggra7935.t1|Name=Ggra7935.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=726bp|location=Sequence derived from alignment at tig00000073_pilon:468842..469567+ (Gracilaria gracilis GNS1m male)
ATGCTTCCCGTTCTAGGTCGTCCCGAACTCCCATTCTTTTTTATCTGCGT
TGCACTCCTTATTGTTTACCGTGTTCTAAATGAACCCGATACAATGTCAG
CATCAAAACAATCGCTGAGATTAGTAATCCTGTCAGACACACACCGCCAA
TTTCGTCGTCCTGTACCAGATGGTGACATCCTTGTTCATTGCGGAGATTC
AGAGTGGCGAGTGGACGAGATAAATGATTGGACATCAAAGCTTCCTCACA
CAAACAAGATATTTGTATCCGGTAATATGGACAGACAGTTCAGGGGTAAG
ACCGATGAATTCCGAGGTGTTTCATACCTGCAGGATGCATTGATGGAGGT
CAATGGATTGAAAATCTATGGCTCGCCATGGACGCCAGAGTTTGTCGGTG
AGTTCCAGTTGGGCGACAAAAGGCAAGCAGAAGATGTTTGGAATCGGGTT
CCGAAAGAAGTCGATATTCTTATAACCCATGGCCCTCCCCGGGGCATCCT
TGACACTACTAGTCGTGGTCTCCGCGTTGGAGATGCAGTTCTCTTAGAAA
AAGTGCGTGAAGTGAAACCGCGTGTCCATTGCTTCGGCCATGTGCATGAG
AGTTATGGGGCAGTGATGAGTGACGGCCCAACGCTCTTCTGTAACGCTGC
AGTATTCAACGGTCAGGCACCTCTTGTCGTTGACATACCATTAGATCACA
CGAAACCTGCTCGGGTTGTTAGTTAG
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