Ggra7931.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7931.t1
Unique NameGgra7931.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length402
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:461154..462359 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708404.1
Preferred nameBIO2
PFAMsBATS,Radical_SAM
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00041,RC00441
KEGG koko:K01012,ko:K15400
KEGG ReactionR01078,R09106
KEGG Pathwayko00073,ko00780,ko01100,map00073,map00780,map01100
KEGG ModuleM00123,M00573,M00577
GOsGO:0003674,GO:0003824,GO:0004076,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016740,GO:0016782,GO:0016783,GO:0017144,GO:0018130,GO:0019752,GO:0032787,GO:0034641,GO:0042364,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0070283,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue1.74e-169
EggNOG OGsCOG0502@1|root,KOG2900@2759|Eukaryota
EC2.3.1.188,2.8.1.6
Descriptionbiotin synthase activity
COG categoryH
BiGG ReactioniMM904.YGR286C,iND750.YGR286C
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7931Ggra7931Gracilaria gracilis GNS1m malegenetig00000073_pilon 461154..462359 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7931.t1.stop1Ggra7931.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 461154..461156 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7931.t1.CDS1Ggra7931.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 461154..462359 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7931.t1.exon1Ggra7931.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 461154..462359 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7931.t1.start1Ggra7931.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 462357..462359 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7931.t1Ggra7931.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 461154..462359 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7931.t1 ID=Ggra7931.t1|Name=Ggra7931.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=402bp
MASKVTLRSSVLSACRRWVSGGKTPSAQVSETVAPSASVPIPPLDSTNRS
SIQKEMKSTLDQRYPIRQDWSREEIRHIYHKPLLELIYHGATAHRIYFDP
REVQKCTLLSIKTGGCPEDCKYCSQSSRYQTEVKAEKLMGFDDVVDKARQ
AKEAGSTRFCMGAAWRGVSQVGPRQFKRVLHMVEEIRGMGMEVCATLGLL
NKEQALALKDAGLTAYNHNLDTSKEYYPQVITSRVYEDRLKTLENVREAG
ISVCCGGIIGLGEKHEDRVSLIHTLSTLPEHPESVPVNALVANAGTPLED
AKPVGAWDLCRMIATARVVMPRSMVRLSAGRVSLSEAEQALCFMAGANSI
FTGEKLLTTPNPEFDRDATMMETLGLIGKPPFFYEEAYEKRKSGDRSLET
V*
back to top

spliced messenger RNA

>Ggra7931.t1 ID=Ggra7931.t1|Name=Ggra7931.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1206bp|location=Sequence derived from alignment at tig00000073_pilon:461154..462359- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCTAAGGTAACATTGAGGTCGTCTGTACTAAGCGCCTGTCGCCG
CTGGGTTTCAGGGGGAAAAACGCCATCAGCTCAAGTTTCTGAGACTGTGG
CACCATCTGCGTCAGTTCCAATCCCACCACTCGACAGCACAAACCGATCG
TCCATACAAAAAGAAATGAAGTCTACACTGGATCAAAGATACCCCATTCG
GCAAGATTGGTCCCGAGAAGAAATACGACACATTTACCATAAACCACTGC
TTGAGTTAATCTATCACGGCGCGACAGCTCATCGGATCTACTTCGATCCG
CGAGAAGTGCAAAAATGTACTCTGTTATCCATCAAGACGGGGGGATGCCC
TGAAGATTGTAAGTATTGCTCACAAAGTTCAAGGTACCAGACGGAGGTGA
AGGCCGAAAAACTTATGGGATTTGACGACGTCGTCGACAAAGCTCGACAG
GCTAAGGAAGCAGGGTCAACGAGGTTTTGCATGGGGGCGGCATGGAGAGG
CGTCTCACAGGTCGGACCTAGACAGTTCAAACGTGTGCTACACATGGTCG
AGGAAATCCGAGGAATGGGAATGGAGGTATGTGCAACTTTGGGTCTTCTG
AACAAAGAACAAGCATTGGCTTTGAAAGATGCCGGTCTAACAGCGTACAA
CCATAATCTCGACACATCCAAAGAATACTATCCTCAGGTGATCACGTCTC
GCGTCTATGAAGATCGACTCAAGACTTTGGAGAATGTGCGCGAAGCAGGG
ATATCTGTCTGCTGCGGAGGCATAATCGGTTTGGGTGAGAAACATGAAGA
TAGAGTTTCATTGATTCACACTTTGTCCACATTACCAGAACATCCTGAAA
GCGTACCGGTGAATGCTCTGGTGGCGAATGCTGGTACTCCTTTGGAGGAT
GCCAAGCCGGTGGGAGCATGGGATCTTTGTCGAATGATTGCAACTGCACG
TGTTGTGATGCCGCGTTCCATGGTGCGACTGAGTGCCGGTAGAGTATCAC
TTTCCGAAGCAGAGCAGGCGTTGTGTTTTATGGCTGGAGCAAATTCAATA
TTCACTGGTGAAAAGCTTTTGACGACGCCCAATCCTGAGTTTGACAGAGA
TGCAACTATGATGGAAACATTGGGGCTGATTGGAAAGCCCCCATTCTTCT
ACGAGGAGGCGTATGAAAAAAGAAAATCAGGGGATCGTTCGTTGGAAACG
GTGTGA
back to top

protein sequence of Ggra7931.t1

>Ggra7931.t1 ID=Ggra7931.t1|Name=Ggra7931.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=402bp
MASKVTLRSSVLSACRRWVSGGKTPSAQVSETVAPSASVPIPPLDSTNRS
SIQKEMKSTLDQRYPIRQDWSREEIRHIYHKPLLELIYHGATAHRIYFDP
REVQKCTLLSIKTGGCPEDCKYCSQSSRYQTEVKAEKLMGFDDVVDKARQ
AKEAGSTRFCMGAAWRGVSQVGPRQFKRVLHMVEEIRGMGMEVCATLGLL
NKEQALALKDAGLTAYNHNLDTSKEYYPQVITSRVYEDRLKTLENVREAG
ISVCCGGIIGLGEKHEDRVSLIHTLSTLPEHPESVPVNALVANAGTPLED
AKPVGAWDLCRMIATARVVMPRSMVRLSAGRVSLSEAEQALCFMAGANSI
FTGEKLLTTPNPEFDRDATMMETLGLIGKPPFFYEEAYEKRKSGDRSLET
V*
back to top

mRNA from alignment at tig00000073_pilon:461154..462359-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7931.t1 ID=Ggra7931.t1|Name=Ggra7931.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1206bp|location=Sequence derived from alignment at tig00000073_pilon:461154..462359- (Gracilaria gracilis GNS1m male)
ATGGCCTCTAAGGTAACATTGAGGTCGTCTGTACTAAGCGCCTGTCGCCG
CTGGGTTTCAGGGGGAAAAACGCCATCAGCTCAAGTTTCTGAGACTGTGG
CACCATCTGCGTCAGTTCCAATCCCACCACTCGACAGCACAAACCGATCG
TCCATACAAAAAGAAATGAAGTCTACACTGGATCAAAGATACCCCATTCG
GCAAGATTGGTCCCGAGAAGAAATACGACACATTTACCATAAACCACTGC
TTGAGTTAATCTATCACGGCGCGACAGCTCATCGGATCTACTTCGATCCG
CGAGAAGTGCAAAAATGTACTCTGTTATCCATCAAGACGGGGGGATGCCC
TGAAGATTGTAAGTATTGCTCACAAAGTTCAAGGTACCAGACGGAGGTGA
AGGCCGAAAAACTTATGGGATTTGACGACGTCGTCGACAAAGCTCGACAG
GCTAAGGAAGCAGGGTCAACGAGGTTTTGCATGGGGGCGGCATGGAGAGG
CGTCTCACAGGTCGGACCTAGACAGTTCAAACGTGTGCTACACATGGTCG
AGGAAATCCGAGGAATGGGAATGGAGGTATGTGCAACTTTGGGTCTTCTG
AACAAAGAACAAGCATTGGCTTTGAAAGATGCCGGTCTAACAGCGTACAA
CCATAATCTCGACACATCCAAAGAATACTATCCTCAGGTGATCACGTCTC
GCGTCTATGAAGATCGACTCAAGACTTTGGAGAATGTGCGCGAAGCAGGG
ATATCTGTCTGCTGCGGAGGCATAATCGGTTTGGGTGAGAAACATGAAGA
TAGAGTTTCATTGATTCACACTTTGTCCACATTACCAGAACATCCTGAAA
GCGTACCGGTGAATGCTCTGGTGGCGAATGCTGGTACTCCTTTGGAGGAT
GCCAAGCCGGTGGGAGCATGGGATCTTTGTCGAATGATTGCAACTGCACG
TGTTGTGATGCCGCGTTCCATGGTGCGACTGAGTGCCGGTAGAGTATCAC
TTTCCGAAGCAGAGCAGGCGTTGTGTTTTATGGCTGGAGCAAATTCAATA
TTCACTGGTGAAAAGCTTTTGACGACGCCCAATCCTGAGTTTGACAGAGA
TGCAACTATGATGGAAACATTGGGGCTGATTGGAAAGCCCCCATTCTTCT
ACGAGGAGGCGTATGAAAAAAGAAAATCAGGGGATCGTTCGTTGGAAACG
GTGTGA
back to top

Coding sequence (CDS) from alignment at tig00000073_pilon:461154..462359-

>Ggra7931.t1 ID=Ggra7931.t1|Name=Ggra7931.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1206bp|location=Sequence derived from alignment at tig00000073_pilon:461154..462359- (Gracilaria gracilis GNS1m male)
ATGGCCTCTAAGGTAACATTGAGGTCGTCTGTACTAAGCGCCTGTCGCCG
CTGGGTTTCAGGGGGAAAAACGCCATCAGCTCAAGTTTCTGAGACTGTGG
CACCATCTGCGTCAGTTCCAATCCCACCACTCGACAGCACAAACCGATCG
TCCATACAAAAAGAAATGAAGTCTACACTGGATCAAAGATACCCCATTCG
GCAAGATTGGTCCCGAGAAGAAATACGACACATTTACCATAAACCACTGC
TTGAGTTAATCTATCACGGCGCGACAGCTCATCGGATCTACTTCGATCCG
CGAGAAGTGCAAAAATGTACTCTGTTATCCATCAAGACGGGGGGATGCCC
TGAAGATTGTAAGTATTGCTCACAAAGTTCAAGGTACCAGACGGAGGTGA
AGGCCGAAAAACTTATGGGATTTGACGACGTCGTCGACAAAGCTCGACAG
GCTAAGGAAGCAGGGTCAACGAGGTTTTGCATGGGGGCGGCATGGAGAGG
CGTCTCACAGGTCGGACCTAGACAGTTCAAACGTGTGCTACACATGGTCG
AGGAAATCCGAGGAATGGGAATGGAGGTATGTGCAACTTTGGGTCTTCTG
AACAAAGAACAAGCATTGGCTTTGAAAGATGCCGGTCTAACAGCGTACAA
CCATAATCTCGACACATCCAAAGAATACTATCCTCAGGTGATCACGTCTC
GCGTCTATGAAGATCGACTCAAGACTTTGGAGAATGTGCGCGAAGCAGGG
ATATCTGTCTGCTGCGGAGGCATAATCGGTTTGGGTGAGAAACATGAAGA
TAGAGTTTCATTGATTCACACTTTGTCCACATTACCAGAACATCCTGAAA
GCGTACCGGTGAATGCTCTGGTGGCGAATGCTGGTACTCCTTTGGAGGAT
GCCAAGCCGGTGGGAGCATGGGATCTTTGTCGAATGATTGCAACTGCACG
TGTTGTGATGCCGCGTTCCATGGTGCGACTGAGTGCCGGTAGAGTATCAC
TTTCCGAAGCAGAGCAGGCGTTGTGTTTTATGGCTGGAGCAAATTCAATA
TTCACTGGTGAAAAGCTTTTGACGACGCCCAATCCTGAGTTTGACAGAGA
TGCAACTATGATGGAAACATTGGGGCTGATTGGAAAGCCCCCATTCTTCT
ACGAGGAGGCGTATGAAAAAAGAAAATCAGGGGATCGTTCGTTGGAAACG
GTGTGA
back to top