Ggra7927.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7927.t1
Unique NameGgra7927.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length336
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:449088..450095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog59894.ENSFALP00000002232
Preferred nameNSMCE4A
PFAMsNse4-Nse3_bdg,Nse4_C
Max annot lvl33208|Metazoa
GOsGO:0000793,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016604,GO:0030915,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070013,GO:0071704,GO:0080134,GO:0080135,GO:0090304,GO:0106068,GO:1901360,GO:1902494,GO:1990234,GO:2001020,GO:2001022
Evalue2.53e-19
EggNOG OGsCOG5125@1|root,KOG2866@2759|Eukaryota,39GJI@33154|Opisthokonta,3BF2I@33208|Metazoa,3CYZH@33213|Bilateria,484ZN@7711|Chordata,48X5M@7742|Vertebrata,4GU7S@8782|Aves
DescriptionNon-structural maintenance of chromosomes element 4 homolog A
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7927Ggra7927Gracilaria gracilis GNS1m malegenetig00000073_pilon 449088..450095 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7927.t1.stop1Ggra7927.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 449088..449090 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7927.t1.CDS1Ggra7927.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 449088..450095 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7927.t1.exon1Ggra7927.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 449088..450095 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7927.t1.start1Ggra7927.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 450093..450095 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7927.t1Ggra7927.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 449088..450095 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7927.t1 ID=Ggra7927.t1|Name=Ggra7927.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=336bp
MSQVNRDAVENRRKATIVLKQLREHQQQVDADKDEATDLRSETLKQHFVK
AAKNLEKAKTADQALVDAQIFHKLGVYSKRQAEQLQTGLRVYDVATFTDN
LIAKLRSANADKYDEEDEQSQHISVNFLDIGRSVFNRWKTFHFPDVHFGN
EPKDEIKKVRERKKAERIKKGGPATKPNQLRPTDLEETETDKQVAEMKRE
LQRRKRCNFWLFVIDPNSFPRSVENIFHSSFLVKEKFASLDLKSEGEPMI
RYINPIDEEMDGGDQERKGSEEEIGNSQFIMGFDRNLWQEMIRKHNIRKC
LFPPKTRDYEDARLQQLEAYGQNGDNTDEMGSAAF*
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spliced messenger RNA

>Ggra7927.t1 ID=Ggra7927.t1|Name=Ggra7927.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1008bp|location=Sequence derived from alignment at tig00000073_pilon:449088..450095- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCAGGTCAACCGTGACGCAGTGGAGAACAGAAGGAAGGCCACTAT
CGTTCTGAAGCAACTGCGCGAACATCAACAGCAAGTAGACGCCGACAAGG
ATGAAGCAACGGATCTCCGTTCCGAAACTCTCAAGCAGCACTTCGTTAAA
GCAGCCAAGAATCTAGAAAAGGCAAAAACCGCTGATCAGGCCCTCGTTGA
TGCGCAGATTTTCCACAAGCTTGGCGTGTATTCCAAGCGCCAGGCTGAGC
AGCTGCAAACTGGTTTGCGTGTTTACGATGTCGCTACCTTCACGGATAAC
CTCATTGCGAAGTTGCGTAGTGCAAACGCGGACAAATATGATGAAGAAGA
CGAGCAAAGCCAACATATCTCTGTTAACTTTCTTGATATCGGGCGAAGCG
TGTTTAATAGATGGAAAACGTTCCACTTCCCAGATGTACACTTCGGTAAC
GAACCGAAGGACGAAATCAAAAAGGTTAGGGAACGCAAGAAAGCTGAGAG
AATTAAGAAGGGCGGACCAGCAACAAAGCCAAACCAACTGAGACCTACGG
ACTTGGAAGAAACTGAAACTGACAAACAAGTGGCAGAGATGAAGCGAGAA
CTGCAACGGAGAAAGCGTTGCAACTTTTGGTTATTCGTAATCGACCCGAA
TAGCTTTCCTCGCTCCGTTGAAAACATTTTCCACTCGTCCTTTCTCGTCA
AGGAGAAGTTCGCTTCTCTTGACCTCAAAAGTGAAGGTGAACCTATGATC
CGGTATATCAATCCCATTGATGAGGAAATGGATGGCGGGGACCAAGAACG
GAAAGGGAGTGAGGAAGAAATCGGTAATTCACAGTTCATTATGGGGTTTG
ACAGAAATCTGTGGCAAGAAATGATTCGCAAACACAACATTCGAAAGTGT
CTGTTCCCTCCAAAGACAAGAGACTACGAGGATGCACGACTGCAGCAACT
GGAAGCATATGGGCAGAATGGTGATAATACCGACGAAATGGGATCTGCAG
CATTTTGA
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protein sequence of Ggra7927.t1

>Ggra7927.t1 ID=Ggra7927.t1|Name=Ggra7927.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=336bp
MSQVNRDAVENRRKATIVLKQLREHQQQVDADKDEATDLRSETLKQHFVK
AAKNLEKAKTADQALVDAQIFHKLGVYSKRQAEQLQTGLRVYDVATFTDN
LIAKLRSANADKYDEEDEQSQHISVNFLDIGRSVFNRWKTFHFPDVHFGN
EPKDEIKKVRERKKAERIKKGGPATKPNQLRPTDLEETETDKQVAEMKRE
LQRRKRCNFWLFVIDPNSFPRSVENIFHSSFLVKEKFASLDLKSEGEPMI
RYINPIDEEMDGGDQERKGSEEEIGNSQFIMGFDRNLWQEMIRKHNIRKC
LFPPKTRDYEDARLQQLEAYGQNGDNTDEMGSAAF*
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mRNA from alignment at tig00000073_pilon:449088..450095-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7927.t1 ID=Ggra7927.t1|Name=Ggra7927.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1008bp|location=Sequence derived from alignment at tig00000073_pilon:449088..450095- (Gracilaria gracilis GNS1m male)
ATGAGCCAGGTCAACCGTGACGCAGTGGAGAACAGAAGGAAGGCCACTAT
CGTTCTGAAGCAACTGCGCGAACATCAACAGCAAGTAGACGCCGACAAGG
ATGAAGCAACGGATCTCCGTTCCGAAACTCTCAAGCAGCACTTCGTTAAA
GCAGCCAAGAATCTAGAAAAGGCAAAAACCGCTGATCAGGCCCTCGTTGA
TGCGCAGATTTTCCACAAGCTTGGCGTGTATTCCAAGCGCCAGGCTGAGC
AGCTGCAAACTGGTTTGCGTGTTTACGATGTCGCTACCTTCACGGATAAC
CTCATTGCGAAGTTGCGTAGTGCAAACGCGGACAAATATGATGAAGAAGA
CGAGCAAAGCCAACATATCTCTGTTAACTTTCTTGATATCGGGCGAAGCG
TGTTTAATAGATGGAAAACGTTCCACTTCCCAGATGTACACTTCGGTAAC
GAACCGAAGGACGAAATCAAAAAGGTTAGGGAACGCAAGAAAGCTGAGAG
AATTAAGAAGGGCGGACCAGCAACAAAGCCAAACCAACTGAGACCTACGG
ACTTGGAAGAAACTGAAACTGACAAACAAGTGGCAGAGATGAAGCGAGAA
CTGCAACGGAGAAAGCGTTGCAACTTTTGGTTATTCGTAATCGACCCGAA
TAGCTTTCCTCGCTCCGTTGAAAACATTTTCCACTCGTCCTTTCTCGTCA
AGGAGAAGTTCGCTTCTCTTGACCTCAAAAGTGAAGGTGAACCTATGATC
CGGTATATCAATCCCATTGATGAGGAAATGGATGGCGGGGACCAAGAACG
GAAAGGGAGTGAGGAAGAAATCGGTAATTCACAGTTCATTATGGGGTTTG
ACAGAAATCTGTGGCAAGAAATGATTCGCAAACACAACATTCGAAAGTGT
CTGTTCCCTCCAAAGACAAGAGACTACGAGGATGCACGACTGCAGCAACT
GGAAGCATATGGGCAGAATGGTGATAATACCGACGAAATGGGATCTGCAG
CATTTTGA
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Coding sequence (CDS) from alignment at tig00000073_pilon:449088..450095-

>Ggra7927.t1 ID=Ggra7927.t1|Name=Ggra7927.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1008bp|location=Sequence derived from alignment at tig00000073_pilon:449088..450095- (Gracilaria gracilis GNS1m male)
ATGAGCCAGGTCAACCGTGACGCAGTGGAGAACAGAAGGAAGGCCACTAT
CGTTCTGAAGCAACTGCGCGAACATCAACAGCAAGTAGACGCCGACAAGG
ATGAAGCAACGGATCTCCGTTCCGAAACTCTCAAGCAGCACTTCGTTAAA
GCAGCCAAGAATCTAGAAAAGGCAAAAACCGCTGATCAGGCCCTCGTTGA
TGCGCAGATTTTCCACAAGCTTGGCGTGTATTCCAAGCGCCAGGCTGAGC
AGCTGCAAACTGGTTTGCGTGTTTACGATGTCGCTACCTTCACGGATAAC
CTCATTGCGAAGTTGCGTAGTGCAAACGCGGACAAATATGATGAAGAAGA
CGAGCAAAGCCAACATATCTCTGTTAACTTTCTTGATATCGGGCGAAGCG
TGTTTAATAGATGGAAAACGTTCCACTTCCCAGATGTACACTTCGGTAAC
GAACCGAAGGACGAAATCAAAAAGGTTAGGGAACGCAAGAAAGCTGAGAG
AATTAAGAAGGGCGGACCAGCAACAAAGCCAAACCAACTGAGACCTACGG
ACTTGGAAGAAACTGAAACTGACAAACAAGTGGCAGAGATGAAGCGAGAA
CTGCAACGGAGAAAGCGTTGCAACTTTTGGTTATTCGTAATCGACCCGAA
TAGCTTTCCTCGCTCCGTTGAAAACATTTTCCACTCGTCCTTTCTCGTCA
AGGAGAAGTTCGCTTCTCTTGACCTCAAAAGTGAAGGTGAACCTATGATC
CGGTATATCAATCCCATTGATGAGGAAATGGATGGCGGGGACCAAGAACG
GAAAGGGAGTGAGGAAGAAATCGGTAATTCACAGTTCATTATGGGGTTTG
ACAGAAATCTGTGGCAAGAAATGATTCGCAAACACAACATTCGAAAGTGT
CTGTTCCCTCCAAAGACAAGAGACTACGAGGATGCACGACTGCAGCAACT
GGAAGCATATGGGCAGAATGGTGATAATACCGACGAAATGGGATCTGCAG
CATTTTGA
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