Ggra7923.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7923.t1
Unique Name	Ggra7923.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	596

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000073_pilon	contig	tig00000073_pilon:440365..442152 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706369.1
Preferred name	UBP12
PFAMs	MATH,UCH,USP7_C2,USP7_ICP0_bdg
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03066,ko:K11838,ko:K11858,ko:K21596
KEGG Pathway	ko03050,ko04068,ko05168,ko05169,ko05203,map03050,map04068,map05168,map05169,map05203
KEGG Module	M00341
GOs	GO:0001101,GO:0003674,GO:0003824,GO:0004843,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005911,GO:0006508,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009506,GO:0009719,GO:0009725,GO:0009753,GO:0009755,GO:0009867,GO:0009987,GO:0010033,GO:0016787,GO:0019538,GO:0019783,GO:0023052,GO:0030054,GO:0032870,GO:0036459,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055044,GO:0065007,GO:0070011,GO:0070887,GO:0071229,GO:0071310,GO:0071395,GO:0071495,GO:0071704,GO:0101005,GO:0140096,GO:1901564,GO:1901700,GO:1901701
Evalue	2.8e-95
EggNOG OGs	COG5077@1\|root,KOG1863@2759\|Eukaryota
EC	3.4.19.12
Description	ubiquitinyl hydrolase activity
COG category	O
BRITE	ko00000,ko00001,ko00002,ko01000,ko01002,ko03000,ko03051,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7923	Ggra7923	Gracilaria gracilis GNS1m male	gene	tig00000073_pilon 440365..442152 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7923.t1.start1	Ggra7923.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000073_pilon 440365..440367 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7923.t1.CDS1	Ggra7923.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000073_pilon 440365..442152 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7923.t1.exon1	Ggra7923.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000073_pilon 440365..442152 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7923.t1.stop1	Ggra7923.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000073_pilon 442150..442152 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7923.t1	Ggra7923.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000073_pilon 440365..442152 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000073_pilon:440365..442152+
coding sequence from alignment at tig00000073_pilon:440365..442152+

mRNA sequence

>Ggra7923.t1 ID=Ggra7923.t1|Name=Ggra7923.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=596bp
MIIETSFVYVLREYTTTRNDRVYSPYCHFGGFRWRLLIFPNFHYADGVSA
YLHCGGPCHSSNHAIASHNSMEAPFNNAALNAWSRTATFWLAVLPPSTEA
AAAALTAPQGFKVLQQSPLEHSAVTLASGTPPPRVRKTEHNFKATSDDWG
FLELAKSSELQPGKYADDHMNVFFHVRIQLAQSLAQPRIKNVASLRSGIT
TQIVGIENQGATCYMTSVLQMLYMIGAFRRAVYELPLPKMRGEGDISGFL
ICYAIQSLFYELLFSGEAVKTDQLLVLFGWDDEHAQEHHDLQEFKLFLCE
QLAQVMSKRAPEQPNTLRTLFQGKTMSSVECINVDYNSSTEEYFSDLSLD
VMGCRNIYESFEKYTKSETLTGDNKYDADGYDDLQEAIKVVKFLKLPPVL
HLHLKRFDYDCRLQKLFKINDRYEFGAEINLSRFVFNSDGDDVYVLHSVL
VHGYDKSNVAQYQAFIRPYIDLGGNEGSKWYNFNDEKVRISSEQEAIQDN
FGGCYERVVLDSGVSVNGSVDSDGRRRQRATLCSQAREANEKMYQCCNAY
MLQYVRKADVPSVLKRPEAADVPEAFRAESCERGRRGRKRRSLGL*

spliced messenger RNA

>Ggra7923.t1 ID=Ggra7923.t1|Name=Ggra7923.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1788bp|location=Sequence derived from alignment at tig00000073_pilon:440365..442152+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTATAGAGACCAGTTTCGTCTACGTACTGCGCGAGTATACCACCAC
CCGCAATGATCGTGTGTACTCTCCATACTGCCACTTTGGCGGCTTCCGCT
GGCGCCTGCTCATCTTTCCCAACTTCCACTACGCCGATGGCGTATCCGCA
TACCTCCATTGCGGCGGTCCTTGTCATTCATCCAATCACGCCATCGCGTC
CCACAACAGCATGGAAGCACCCTTCAACAACGCCGCGCTCAATGCCTGGA
GCCGAACTGCAACCTTCTGGCTTGCTGTGCTTCCACCTAGCACTGAGGCT
GCCGCCGCTGCGCTGACAGCGCCTCAAGGCTTTAAAGTATTGCAACAGTC
ACCCTTGGAACACAGCGCCGTCACGCTCGCTTCGGGAACGCCACCGCCAA
GAGTCCGGAAGACAGAGCACAACTTCAAGGCCACGTCCGACGACTGGGGC
TTCCTCGAACTTGCAAAGAGCTCAGAACTGCAGCCCGGAAAGTATGCCGA
TGACCACATGAATGTGTTCTTTCATGTGCGTATTCAACTGGCGCAATCTC
TTGCGCAACCCAGAATCAAGAATGTTGCATCACTACGTTCTGGCATCACC
ACTCAAATTGTGGGCATTGAAAACCAAGGCGCTACCTGCTACATGACGTC
GGTGTTGCAAATGTTGTACATGATTGGTGCCTTTCGTAGAGCCGTGTATG
AACTGCCATTGCCCAAGATGCGTGGAGAAGGGGATATTAGTGGATTCCTT
ATTTGTTATGCAATCCAATCGTTGTTCTACGAGTTGCTGTTTTCTGGAGA
GGCGGTCAAAACGGACCAGCTCTTGGTTTTGTTTGGATGGGATGATGAAC
ACGCACAAGAGCACCATGATTTGCAGGAGTTCAAACTATTCCTGTGTGAG
CAACTTGCGCAAGTGATGTCAAAAAGGGCTCCAGAACAGCCGAATACGCT
GCGTACGCTTTTCCAGGGTAAAACAATGAGCAGTGTTGAATGCATCAACG
TTGACTACAACTCTTCAACGGAGGAATACTTCTCTGACCTTTCGCTGGAT
GTGATGGGATGTCGCAACATATACGAGTCGTTTGAAAAGTATACCAAGTC
TGAAACGTTAACAGGTGACAACAAATATGACGCTGACGGCTATGATGACC
TCCAGGAGGCCATCAAAGTAGTCAAGTTTCTCAAGCTGCCGCCTGTACTA
CACTTGCATCTTAAACGGTTTGATTATGATTGTAGACTCCAAAAGCTGTT
CAAGATCAACGATCGCTACGAATTTGGGGCAGAAATTAATCTAAGTCGAT
TTGTGTTCAATTCAGATGGCGACGATGTGTACGTGCTGCACTCCGTACTA
GTGCATGGCTACGACAAGAGCAATGTGGCACAATATCAGGCGTTCATTCG
CCCGTATATCGATCTGGGCGGCAACGAGGGCAGCAAGTGGTACAACTTCA
ATGATGAGAAGGTGCGTATCTCAAGCGAACAGGAGGCCATCCAGGATAAC
TTTGGCGGGTGCTACGAGAGAGTTGTGCTCGATAGTGGTGTTTCGGTGAA
TGGTAGTGTCGATTCCGACGGGCGTCGCAGGCAGCGGGCCACTTTGTGTT
CGCAGGCGCGTGAAGCGAACGAGAAAATGTATCAGTGTTGCAATGCGTAC
ATGCTCCAGTACGTGCGTAAAGCGGATGTGCCATCTGTTCTCAAGCGGCC
GGAGGCAGCTGATGTTCCGGAAGCCTTTCGAGCGGAGAGTTGTGAGCGCG
GGCGGCGAGGTCGAAAACGCCGATCGTTGGGTCTTTGA

protein sequence of Ggra7923.t1

>Ggra7923.t1 ID=Ggra7923.t1|Name=Ggra7923.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=596bp
MIIETSFVYVLREYTTTRNDRVYSPYCHFGGFRWRLLIFPNFHYADGVSA
YLHCGGPCHSSNHAIASHNSMEAPFNNAALNAWSRTATFWLAVLPPSTEA
AAAALTAPQGFKVLQQSPLEHSAVTLASGTPPPRVRKTEHNFKATSDDWG
FLELAKSSELQPGKYADDHMNVFFHVRIQLAQSLAQPRIKNVASLRSGIT
TQIVGIENQGATCYMTSVLQMLYMIGAFRRAVYELPLPKMRGEGDISGFL
ICYAIQSLFYELLFSGEAVKTDQLLVLFGWDDEHAQEHHDLQEFKLFLCE
QLAQVMSKRAPEQPNTLRTLFQGKTMSSVECINVDYNSSTEEYFSDLSLD
VMGCRNIYESFEKYTKSETLTGDNKYDADGYDDLQEAIKVVKFLKLPPVL
HLHLKRFDYDCRLQKLFKINDRYEFGAEINLSRFVFNSDGDDVYVLHSVL
VHGYDKSNVAQYQAFIRPYIDLGGNEGSKWYNFNDEKVRISSEQEAIQDN
FGGCYERVVLDSGVSVNGSVDSDGRRRQRATLCSQAREANEKMYQCCNAY
MLQYVRKADVPSVLKRPEAADVPEAFRAESCERGRRGRKRRSLGL*

mRNA from alignment at tig00000073_pilon:440365..442152+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7923.t1 ID=Ggra7923.t1|Name=Ggra7923.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1788bp|location=Sequence derived from alignment at tig00000073_pilon:440365..442152+ (Gracilaria gracilis GNS1m male)
ATGATTATAGAGACCAGTTTCGTCTACGTACTGCGCGAGTATACCACCAC
CCGCAATGATCGTGTGTACTCTCCATACTGCCACTTTGGCGGCTTCCGCT
GGCGCCTGCTCATCTTTCCCAACTTCCACTACGCCGATGGCGTATCCGCA
TACCTCCATTGCGGCGGTCCTTGTCATTCATCCAATCACGCCATCGCGTC
CCACAACAGCATGGAAGCACCCTTCAACAACGCCGCGCTCAATGCCTGGA
GCCGAACTGCAACCTTCTGGCTTGCTGTGCTTCCACCTAGCACTGAGGCT
GCCGCCGCTGCGCTGACAGCGCCTCAAGGCTTTAAAGTATTGCAACAGTC
ACCCTTGGAACACAGCGCCGTCACGCTCGCTTCGGGAACGCCACCGCCAA
GAGTCCGGAAGACAGAGCACAACTTCAAGGCCACGTCCGACGACTGGGGC
TTCCTCGAACTTGCAAAGAGCTCAGAACTGCAGCCCGGAAAGTATGCCGA
TGACCACATGAATGTGTTCTTTCATGTGCGTATTCAACTGGCGCAATCTC
TTGCGCAACCCAGAATCAAGAATGTTGCATCACTACGTTCTGGCATCACC
ACTCAAATTGTGGGCATTGAAAACCAAGGCGCTACCTGCTACATGACGTC
GGTGTTGCAAATGTTGTACATGATTGGTGCCTTTCGTAGAGCCGTGTATG
AACTGCCATTGCCCAAGATGCGTGGAGAAGGGGATATTAGTGGATTCCTT
ATTTGTTATGCAATCCAATCGTTGTTCTACGAGTTGCTGTTTTCTGGAGA
GGCGGTCAAAACGGACCAGCTCTTGGTTTTGTTTGGATGGGATGATGAAC
ACGCACAAGAGCACCATGATTTGCAGGAGTTCAAACTATTCCTGTGTGAG
CAACTTGCGCAAGTGATGTCAAAAAGGGCTCCAGAACAGCCGAATACGCT
GCGTACGCTTTTCCAGGGTAAAACAATGAGCAGTGTTGAATGCATCAACG
TTGACTACAACTCTTCAACGGAGGAATACTTCTCTGACCTTTCGCTGGAT
GTGATGGGATGTCGCAACATATACGAGTCGTTTGAAAAGTATACCAAGTC
TGAAACGTTAACAGGTGACAACAAATATGACGCTGACGGCTATGATGACC
TCCAGGAGGCCATCAAAGTAGTCAAGTTTCTCAAGCTGCCGCCTGTACTA
CACTTGCATCTTAAACGGTTTGATTATGATTGTAGACTCCAAAAGCTGTT
CAAGATCAACGATCGCTACGAATTTGGGGCAGAAATTAATCTAAGTCGAT
TTGTGTTCAATTCAGATGGCGACGATGTGTACGTGCTGCACTCCGTACTA
GTGCATGGCTACGACAAGAGCAATGTGGCACAATATCAGGCGTTCATTCG
CCCGTATATCGATCTGGGCGGCAACGAGGGCAGCAAGTGGTACAACTTCA
ATGATGAGAAGGTGCGTATCTCAAGCGAACAGGAGGCCATCCAGGATAAC
TTTGGCGGGTGCTACGAGAGAGTTGTGCTCGATAGTGGTGTTTCGGTGAA
TGGTAGTGTCGATTCCGACGGGCGTCGCAGGCAGCGGGCCACTTTGTGTT
CGCAGGCGCGTGAAGCGAACGAGAAAATGTATCAGTGTTGCAATGCGTAC
ATGCTCCAGTACGTGCGTAAAGCGGATGTGCCATCTGTTCTCAAGCGGCC
GGAGGCAGCTGATGTTCCGGAAGCCTTTCGAGCGGAGAGTTGTGAGCGCG
GGCGGCGAGGTCGAAAACGCCGATCGTTGGGTCTTTGA

Coding sequence (CDS) from alignment at tig00000073_pilon:440365..442152+

>Ggra7923.t1 ID=Ggra7923.t1|Name=Ggra7923.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1788bp|location=Sequence derived from alignment at tig00000073_pilon:440365..442152+ (Gracilaria gracilis GNS1m male)
ATGATTATAGAGACCAGTTTCGTCTACGTACTGCGCGAGTATACCACCAC
CCGCAATGATCGTGTGTACTCTCCATACTGCCACTTTGGCGGCTTCCGCT
GGCGCCTGCTCATCTTTCCCAACTTCCACTACGCCGATGGCGTATCCGCA
TACCTCCATTGCGGCGGTCCTTGTCATTCATCCAATCACGCCATCGCGTC
CCACAACAGCATGGAAGCACCCTTCAACAACGCCGCGCTCAATGCCTGGA
GCCGAACTGCAACCTTCTGGCTTGCTGTGCTTCCACCTAGCACTGAGGCT
GCCGCCGCTGCGCTGACAGCGCCTCAAGGCTTTAAAGTATTGCAACAGTC
ACCCTTGGAACACAGCGCCGTCACGCTCGCTTCGGGAACGCCACCGCCAA
GAGTCCGGAAGACAGAGCACAACTTCAAGGCCACGTCCGACGACTGGGGC
TTCCTCGAACTTGCAAAGAGCTCAGAACTGCAGCCCGGAAAGTATGCCGA
TGACCACATGAATGTGTTCTTTCATGTGCGTATTCAACTGGCGCAATCTC
TTGCGCAACCCAGAATCAAGAATGTTGCATCACTACGTTCTGGCATCACC
ACTCAAATTGTGGGCATTGAAAACCAAGGCGCTACCTGCTACATGACGTC
GGTGTTGCAAATGTTGTACATGATTGGTGCCTTTCGTAGAGCCGTGTATG
AACTGCCATTGCCCAAGATGCGTGGAGAAGGGGATATTAGTGGATTCCTT
ATTTGTTATGCAATCCAATCGTTGTTCTACGAGTTGCTGTTTTCTGGAGA
GGCGGTCAAAACGGACCAGCTCTTGGTTTTGTTTGGATGGGATGATGAAC
ACGCACAAGAGCACCATGATTTGCAGGAGTTCAAACTATTCCTGTGTGAG
CAACTTGCGCAAGTGATGTCAAAAAGGGCTCCAGAACAGCCGAATACGCT
GCGTACGCTTTTCCAGGGTAAAACAATGAGCAGTGTTGAATGCATCAACG
TTGACTACAACTCTTCAACGGAGGAATACTTCTCTGACCTTTCGCTGGAT
GTGATGGGATGTCGCAACATATACGAGTCGTTTGAAAAGTATACCAAGTC
TGAAACGTTAACAGGTGACAACAAATATGACGCTGACGGCTATGATGACC
TCCAGGAGGCCATCAAAGTAGTCAAGTTTCTCAAGCTGCCGCCTGTACTA
CACTTGCATCTTAAACGGTTTGATTATGATTGTAGACTCCAAAAGCTGTT
CAAGATCAACGATCGCTACGAATTTGGGGCAGAAATTAATCTAAGTCGAT
TTGTGTTCAATTCAGATGGCGACGATGTGTACGTGCTGCACTCCGTACTA
GTGCATGGCTACGACAAGAGCAATGTGGCACAATATCAGGCGTTCATTCG
CCCGTATATCGATCTGGGCGGCAACGAGGGCAGCAAGTGGTACAACTTCA
ATGATGAGAAGGTGCGTATCTCAAGCGAACAGGAGGCCATCCAGGATAAC
TTTGGCGGGTGCTACGAGAGAGTTGTGCTCGATAGTGGTGTTTCGGTGAA
TGGTAGTGTCGATTCCGACGGGCGTCGCAGGCAGCGGGCCACTTTGTGTT
CGCAGGCGCGTGAAGCGAACGAGAAAATGTATCAGTGTTGCAATGCGTAC
ATGCTCCAGTACGTGCGTAAAGCGGATGTGCCATCTGTTCTCAAGCGGCC
GGAGGCAGCTGATGTTCCGGAAGCCTTTCGAGCGGAGAGTTGTGAGCGCG
GGCGGCGAGGTCGAAAACGCCGATCGTTGGGTCTTTGA