Ggra7919.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7919.t1
Unique NameGgra7919.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length282
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:433484..434329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMB115CT
Max annot lvl2759|Eukaryota
Evalue4.01e-12
EggNOG OGs2CGEV@1|root,2S9K2@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7919Ggra7919Gracilaria gracilis GNS1m malegenetig00000073_pilon 433484..434329 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7919.t1.stop1Ggra7919.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 433484..433486 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7919.t1.CDS1Ggra7919.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 433484..434329 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7919.t1.exon1Ggra7919.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 433484..434329 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7919.t1.start1Ggra7919.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 434327..434329 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7919.t1Ggra7919.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 433484..434329 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7919.t1 ID=Ggra7919.t1|Name=Ggra7919.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=282bp
MLNEAISATQDALSRTQLQKLRRESTVPVSNDSRLSSRFRVHGWRWHHLG
IIRDLTRLENNALSKRQRLCSVQDVRESRSLRRQMYDAFQYIMRDNWALH
NIVENKLFLPWVMSAEQSGLNADAVNVIGNERRRLQRHAQLVDDRVAKWS
ETSEYNPSKLTQQTCESELQGIVHSIRRLRRNASLLFDVSEQILIPTVKL
TFSEAQQLRFNSTVLKHISGKQARISLVVFRDAVDLKHAVVADSEDALNF
ERDVPGPIRKLGVPFWRKRFVADRIRFLTEE*
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spliced messenger RNA

>Ggra7919.t1 ID=Ggra7919.t1|Name=Ggra7919.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=846bp|location=Sequence derived from alignment at tig00000073_pilon:433484..434329- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAATGAAGCCATATCCGCCACTCAAGACGCTCTGTCCCGAACGCA
GCTTCAAAAGCTACGTCGCGAAAGCACAGTACCAGTGTCGAACGACAGTC
GACTGTCGTCGCGCTTCCGCGTACACGGTTGGCGATGGCATCATCTAGGG
ATCATCCGCGATCTCACACGTCTGGAAAATAATGCGCTCAGCAAGCGGCA
GCGTCTATGCTCAGTGCAAGATGTGCGCGAATCGCGTTCGTTACGACGTC
AGATGTATGACGCGTTCCAATACATCATGCGTGATAATTGGGCGTTGCAT
AACATCGTGGAAAATAAGCTGTTCCTTCCGTGGGTGATGAGTGCAGAACA
GAGTGGATTGAATGCTGATGCTGTGAATGTCATCGGTAATGAACGACGCA
GATTACAACGACATGCACAACTGGTGGATGATCGCGTTGCAAAATGGAGT
GAGACAAGCGAGTACAATCCGTCAAAACTGACTCAACAAACATGTGAAAG
CGAACTGCAAGGCATCGTACATAGTATACGAAGACTACGTCGCAACGCAT
CTCTTCTTTTCGACGTTTCGGAACAAATTCTGATTCCAACCGTGAAGCTT
ACGTTCTCTGAAGCGCAGCAGCTGCGGTTCAACTCCACGGTTCTGAAGCA
CATCTCTGGCAAGCAGGCGCGCATTTCCTTGGTGGTTTTCAGGGATGCCG
TGGATCTGAAACATGCCGTGGTGGCCGATAGTGAAGACGCTCTCAACTTT
GAACGAGACGTTCCTGGCCCTATTCGGAAGCTTGGCGTGCCGTTTTGGAG
GAAGCGGTTCGTGGCTGACAGGATACGATTTCTTACGGAGGAGTGA
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protein sequence of Ggra7919.t1

>Ggra7919.t1 ID=Ggra7919.t1|Name=Ggra7919.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=282bp
MLNEAISATQDALSRTQLQKLRRESTVPVSNDSRLSSRFRVHGWRWHHLG
IIRDLTRLENNALSKRQRLCSVQDVRESRSLRRQMYDAFQYIMRDNWALH
NIVENKLFLPWVMSAEQSGLNADAVNVIGNERRRLQRHAQLVDDRVAKWS
ETSEYNPSKLTQQTCESELQGIVHSIRRLRRNASLLFDVSEQILIPTVKL
TFSEAQQLRFNSTVLKHISGKQARISLVVFRDAVDLKHAVVADSEDALNF
ERDVPGPIRKLGVPFWRKRFVADRIRFLTEE*
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mRNA from alignment at tig00000073_pilon:433484..434329-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7919.t1 ID=Ggra7919.t1|Name=Ggra7919.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=846bp|location=Sequence derived from alignment at tig00000073_pilon:433484..434329- (Gracilaria gracilis GNS1m male)
ATGCTCAATGAAGCCATATCCGCCACTCAAGACGCTCTGTCCCGAACGCA
GCTTCAAAAGCTACGTCGCGAAAGCACAGTACCAGTGTCGAACGACAGTC
GACTGTCGTCGCGCTTCCGCGTACACGGTTGGCGATGGCATCATCTAGGG
ATCATCCGCGATCTCACACGTCTGGAAAATAATGCGCTCAGCAAGCGGCA
GCGTCTATGCTCAGTGCAAGATGTGCGCGAATCGCGTTCGTTACGACGTC
AGATGTATGACGCGTTCCAATACATCATGCGTGATAATTGGGCGTTGCAT
AACATCGTGGAAAATAAGCTGTTCCTTCCGTGGGTGATGAGTGCAGAACA
GAGTGGATTGAATGCTGATGCTGTGAATGTCATCGGTAATGAACGACGCA
GATTACAACGACATGCACAACTGGTGGATGATCGCGTTGCAAAATGGAGT
GAGACAAGCGAGTACAATCCGTCAAAACTGACTCAACAAACATGTGAAAG
CGAACTGCAAGGCATCGTACATAGTATACGAAGACTACGTCGCAACGCAT
CTCTTCTTTTCGACGTTTCGGAACAAATTCTGATTCCAACCGTGAAGCTT
ACGTTCTCTGAAGCGCAGCAGCTGCGGTTCAACTCCACGGTTCTGAAGCA
CATCTCTGGCAAGCAGGCGCGCATTTCCTTGGTGGTTTTCAGGGATGCCG
TGGATCTGAAACATGCCGTGGTGGCCGATAGTGAAGACGCTCTCAACTTT
GAACGAGACGTTCCTGGCCCTATTCGGAAGCTTGGCGTGCCGTTTTGGAG
GAAGCGGTTCGTGGCTGACAGGATACGATTTCTTACGGAGGAGTGA
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Coding sequence (CDS) from alignment at tig00000073_pilon:433484..434329-

>Ggra7919.t1 ID=Ggra7919.t1|Name=Ggra7919.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=846bp|location=Sequence derived from alignment at tig00000073_pilon:433484..434329- (Gracilaria gracilis GNS1m male)
ATGCTCAATGAAGCCATATCCGCCACTCAAGACGCTCTGTCCCGAACGCA
GCTTCAAAAGCTACGTCGCGAAAGCACAGTACCAGTGTCGAACGACAGTC
GACTGTCGTCGCGCTTCCGCGTACACGGTTGGCGATGGCATCATCTAGGG
ATCATCCGCGATCTCACACGTCTGGAAAATAATGCGCTCAGCAAGCGGCA
GCGTCTATGCTCAGTGCAAGATGTGCGCGAATCGCGTTCGTTACGACGTC
AGATGTATGACGCGTTCCAATACATCATGCGTGATAATTGGGCGTTGCAT
AACATCGTGGAAAATAAGCTGTTCCTTCCGTGGGTGATGAGTGCAGAACA
GAGTGGATTGAATGCTGATGCTGTGAATGTCATCGGTAATGAACGACGCA
GATTACAACGACATGCACAACTGGTGGATGATCGCGTTGCAAAATGGAGT
GAGACAAGCGAGTACAATCCGTCAAAACTGACTCAACAAACATGTGAAAG
CGAACTGCAAGGCATCGTACATAGTATACGAAGACTACGTCGCAACGCAT
CTCTTCTTTTCGACGTTTCGGAACAAATTCTGATTCCAACCGTGAAGCTT
ACGTTCTCTGAAGCGCAGCAGCTGCGGTTCAACTCCACGGTTCTGAAGCA
CATCTCTGGCAAGCAGGCGCGCATTTCCTTGGTGGTTTTCAGGGATGCCG
TGGATCTGAAACATGCCGTGGTGGCCGATAGTGAAGACGCTCTCAACTTT
GAACGAGACGTTCCTGGCCCTATTCGGAAGCTTGGCGTGCCGTTTTGGAG
GAAGCGGTTCGTGGCTGACAGGATACGATTTCTTACGGAGGAGTGA
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