Ggra7918.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7918.t1
Unique NameGgra7918.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length197
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:432343..432933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog227086.JGI_V11_86471
Max annot lvl2759|Eukaryota
Evalue2.03e-16
EggNOG OGs2CZ40@1|root,2S8A8@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7918Ggra7918Gracilaria gracilis GNS1m malegenetig00000073_pilon 432343..432933 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7918.t1.stop1Ggra7918.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 432343..432345 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7918.t1.CDS1Ggra7918.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 432343..432933 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7918.t1.exon1Ggra7918.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 432343..432933 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7918.t1.start1Ggra7918.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 432931..432933 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7918.t1Ggra7918.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 432343..432933 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7918.t1 ID=Ggra7918.t1|Name=Ggra7918.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=197bp
MPTTAFTAPLPLRPFHQRLVVGPFLSTSISRVRPSRMSLTNDLIIKTVEV
AAASLFTNSVAAKHISNNKTATQTAPPISKLVQEVFTQAAHIAAAVDNGA
PSVRRWQKLAICFAIDLAGAGSLSFPFIGDLLDVVYAPLSAVMVYALYAS
PLLSATAFAEEILPGTDAFPTATVAWIAENHQFLSSLRAPPPPPQS*
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spliced messenger RNA

>Ggra7918.t1 ID=Ggra7918.t1|Name=Ggra7918.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=591bp|location=Sequence derived from alignment at tig00000073_pilon:432343..432933- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTACCACTGCCTTCACCGCCCCGCTTCCATTGCGCCCGTTTCATCA
GCGACTTGTCGTAGGCCCTTTCCTGTCAACAAGCATTTCACGAGTGCGCC
CATCTCGCATGAGTCTGACAAATGACCTCATCATCAAAACCGTAGAAGTG
GCCGCCGCCTCCCTCTTCACCAACTCCGTCGCAGCAAAGCACATCTCAAA
CAACAAAACCGCCACACAAACTGCACCCCCAATATCAAAACTGGTACAAG
AGGTATTCACACAAGCCGCGCACATTGCCGCCGCGGTCGACAACGGCGCA
CCTTCCGTCAGACGATGGCAGAAGCTTGCTATCTGTTTCGCCATCGATCT
GGCCGGTGCTGGCTCTCTTTCGTTCCCGTTCATTGGTGATTTGCTGGACG
TCGTTTATGCCCCTCTTTCTGCCGTCATGGTTTACGCTTTGTATGCCAGC
CCTCTGTTGTCGGCGACTGCGTTTGCGGAAGAGATTTTGCCGGGTACTGA
TGCCTTTCCTACTGCTACCGTCGCGTGGATTGCAGAGAACCATCAGTTTT
TGTCGTCGTTGCGAGCTCCTCCTCCCCCTCCTCAATCCTGA
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protein sequence of Ggra7918.t1

>Ggra7918.t1 ID=Ggra7918.t1|Name=Ggra7918.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=197bp
MPTTAFTAPLPLRPFHQRLVVGPFLSTSISRVRPSRMSLTNDLIIKTVEV
AAASLFTNSVAAKHISNNKTATQTAPPISKLVQEVFTQAAHIAAAVDNGA
PSVRRWQKLAICFAIDLAGAGSLSFPFIGDLLDVVYAPLSAVMVYALYAS
PLLSATAFAEEILPGTDAFPTATVAWIAENHQFLSSLRAPPPPPQS*
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mRNA from alignment at tig00000073_pilon:432343..432933-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7918.t1 ID=Ggra7918.t1|Name=Ggra7918.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=591bp|location=Sequence derived from alignment at tig00000073_pilon:432343..432933- (Gracilaria gracilis GNS1m male)
ATGCCTACCACTGCCTTCACCGCCCCGCTTCCATTGCGCCCGTTTCATCA
GCGACTTGTCGTAGGCCCTTTCCTGTCAACAAGCATTTCACGAGTGCGCC
CATCTCGCATGAGTCTGACAAATGACCTCATCATCAAAACCGTAGAAGTG
GCCGCCGCCTCCCTCTTCACCAACTCCGTCGCAGCAAAGCACATCTCAAA
CAACAAAACCGCCACACAAACTGCACCCCCAATATCAAAACTGGTACAAG
AGGTATTCACACAAGCCGCGCACATTGCCGCCGCGGTCGACAACGGCGCA
CCTTCCGTCAGACGATGGCAGAAGCTTGCTATCTGTTTCGCCATCGATCT
GGCCGGTGCTGGCTCTCTTTCGTTCCCGTTCATTGGTGATTTGCTGGACG
TCGTTTATGCCCCTCTTTCTGCCGTCATGGTTTACGCTTTGTATGCCAGC
CCTCTGTTGTCGGCGACTGCGTTTGCGGAAGAGATTTTGCCGGGTACTGA
TGCCTTTCCTACTGCTACCGTCGCGTGGATTGCAGAGAACCATCAGTTTT
TGTCGTCGTTGCGAGCTCCTCCTCCCCCTCCTCAATCCTGA
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Coding sequence (CDS) from alignment at tig00000073_pilon:432343..432933-

>Ggra7918.t1 ID=Ggra7918.t1|Name=Ggra7918.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=591bp|location=Sequence derived from alignment at tig00000073_pilon:432343..432933- (Gracilaria gracilis GNS1m male)
ATGCCTACCACTGCCTTCACCGCCCCGCTTCCATTGCGCCCGTTTCATCA
GCGACTTGTCGTAGGCCCTTTCCTGTCAACAAGCATTTCACGAGTGCGCC
CATCTCGCATGAGTCTGACAAATGACCTCATCATCAAAACCGTAGAAGTG
GCCGCCGCCTCCCTCTTCACCAACTCCGTCGCAGCAAAGCACATCTCAAA
CAACAAAACCGCCACACAAACTGCACCCCCAATATCAAAACTGGTACAAG
AGGTATTCACACAAGCCGCGCACATTGCCGCCGCGGTCGACAACGGCGCA
CCTTCCGTCAGACGATGGCAGAAGCTTGCTATCTGTTTCGCCATCGATCT
GGCCGGTGCTGGCTCTCTTTCGTTCCCGTTCATTGGTGATTTGCTGGACG
TCGTTTATGCCCCTCTTTCTGCCGTCATGGTTTACGCTTTGTATGCCAGC
CCTCTGTTGTCGGCGACTGCGTTTGCGGAAGAGATTTTGCCGGGTACTGA
TGCCTTTCCTACTGCTACCGTCGCGTGGATTGCAGAGAACCATCAGTTTT
TGTCGTCGTTGCGAGCTCCTCCTCCCCCTCCTCAATCCTGA
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