Ggra7917.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7917.t1
Unique NameGgra7917.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length115
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:431153..431586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog29730.Gorai.008G147900.1
PFAMszf-RING_2,zinc_ribbon_9
Max annot lvl35493|Streptophyta
KEGG koko:K11982
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0032446,GO:0036211,GO:0043161,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0051603,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Evalue0.000114
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota,37NKN@33090|Viridiplantae,3GG5Y@35493|Streptophyta
EC2.3.2.27
DescriptionE3 ubiquitin-protein ligase
COG categoryO
BRITEko00000,ko01000,ko04121,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7917Ggra7917Gracilaria gracilis GNS1m malegenetig00000073_pilon 431153..431586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7917.t1Ggra7917.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 431153..431586 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7917.t1.stop1Ggra7917.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 431153..431155 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7917.t1.CDS1Ggra7917.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 431153..431179 -
Ggra7917.t1.CDS2Ggra7917.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000073_pilon 431269..431586 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7917.t1.exon1Ggra7917.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 431153..431179 -
Ggra7917.t1.exon2Ggra7917.t1.exon2Gracilaria gracilis GNS1m maleexontig00000073_pilon 431269..431586 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7917.t1.intron1Ggra7917.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000073_pilon 431180..431268 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7917.t1.start1Ggra7917.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 431584..431586 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7917.t1 ID=Ggra7917.t1|Name=Ggra7917.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=115bp
MELYFQEHDISAEDSERRSTSRPTIALRFAASLAELYSDSAVDEERLREQ
VRAILAELAEGDPTISGTPAASGEAIRTLPYVNVKKNEKGQLDSCPICTE
QFELHEKRIAHRQS*
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spliced messenger RNA

>Ggra7917.t1 ID=Ggra7917.t1|Name=Ggra7917.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=345bp|location=Sequence derived from alignment at tig00000073_pilon:431153..431586- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACTATACTTCCAGGAACACGATATCAGTGCTGAGGATTCTGAGCG
ACGTTCCACGTCGCGACCGACCATTGCACTTCGCTTCGCCGCCTCGTTAG
CGGAGCTCTATTCTGACAGCGCCGTCGATGAGGAACGTTTGAGAGAGCAA
GTGCGAGCCATACTGGCCGAACTAGCCGAAGGTGACCCGACAATATCTGG
AACTCCGGCGGCTTCTGGAGAAGCCATACGCACTTTACCCTACGTCAACG
TGAAGAAGAACGAAAAAGGGCAGCTTGATTCATGTCCGATATGCACCGAA
CAATTCGAGCTGCATGAGAAAAGAATTGCCCACAGACAATCGTGA
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protein sequence of Ggra7917.t1

>Ggra7917.t1 ID=Ggra7917.t1|Name=Ggra7917.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=115bp
MELYFQEHDISAEDSERRSTSRPTIALRFAASLAELYSDSAVDEERLREQ
VRAILAELAEGDPTISGTPAASGEAIRTLPYVNVKKNEKGQLDSCPICTE
QFELHEKRIAHRQS*
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mRNA from alignment at tig00000073_pilon:431153..431586-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7917.t1 ID=Ggra7917.t1|Name=Ggra7917.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=434bp|location=Sequence derived from alignment at tig00000073_pilon:431153..431586- (Gracilaria gracilis GNS1m male)
ATGGAACTATACTTCCAGGAACACGATATCAGTGCTGAGGATTCTGAGCG
ACGTTCCACGTCGCGACCGACCATTGCACTTCGCTTCGCCGCCTCGTTAG
CGGAGCTCTATTCTGACAGCGCCGTCGATGAGGAACGTTTGAGAGAGCAA
GTGCGAGCCATACTGGCCGAACTAGCCGAAGGTGACCCGACAATATCTGG
AACTCCGGCGGCTTCTGGAGAAGCCATACGCACTTTACCCTACGTCAACG
TGAAGAAGAACGAAAAAGGGCAGCTTGATTCATGTCCGATATGCACCGAA
CAATTCGAGCTGCATGAGGTAGCACGACGATTACCATGCGGTCACATGTA
TCATTCAGAATGTGTTGTTCCGTGGTTAAAACAGCATTGTACCTGTCCTA
TGTGCAGAAAAGAATTGCCCACAGACAATCGTGA
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Coding sequence (CDS) from alignment at tig00000073_pilon:431153..431586-

>Ggra7917.t1 ID=Ggra7917.t1|Name=Ggra7917.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=345bp|location=Sequence derived from alignment at tig00000073_pilon:431153..431586- (Gracilaria gracilis GNS1m male)
ATGGAACTATACTTCCAGGAACACGATATCAGTGCTGAGGATTCTGAGCG
ACGTTCCACGTCGCGACCGACCATTGCACTTCGCTTCGCCGCCTCGTTAG
CGGAGCTCTATTCTGACAGCGCCGTCGATGAGGAACGTTTGAGAGAGCAA
GTGCGAGCCATACTGGCCGAACTAGCCGAAGGTGACCCGACAATATCTGG
AACTCCGGCGGCTTCTGGAGAAGCCATACGCACTTTACCCTACGTCAACG
TGAAGAAGAACGAAAAAGGGCAGCTTGATTCATGTCCGATATGCACCGAA
CAATTCGAGCTGCATGAGAAAAGAATTGCCCACAGACAATCGTGA
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