Ggra7914.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7914.t1
Unique NameGgra7914.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length228
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:427924..428743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702810.1
Preferred nameFAHD2A
PFAMsFAA_hydrolase
Max annot lvl2759|Eukaryota
KEGG rclassRC00032,RC00130,RC00326,RC00446,RC02795
KEGG koko:K01557,ko:K03012,ko:K03142,ko:K17100,ko:K21437
KEGG ReactionR00435,R00441,R00442,R00443,R01085,R01440
KEGG Pathwayko00230,ko00240,ko00350,ko00680,ko01100,ko01120,ko01200,ko03020,ko03022,ko03420,ko05016,ko05169,ko05203,map00230,map00240,map00350,map00680,map01100,map01120,map01200,map03020,map03022,map03420,map05016,map05169,map05203
KEGG ModuleM00180,M00290,M00344
GOsGO:0000418,GO:0000419,GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009892,GO:0009987,GO:0010426,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016246,GO:0016441,GO:0016458,GO:0019222,GO:0030880,GO:0031047,GO:0031974,GO:0031981,GO:0032259,GO:0032776,GO:0032991,GO:0034641,GO:0035194,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044728,GO:0046483,GO:0048519,GO:0050789,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0090304,GO:1901360,GO:1902494,GO:1990234
Evalue8.18e-64
EggNOG OGsCOG0179@1|root,KOG1535@2759|Eukaryota
EC2.2.1.3,3.7.1.5
Descriptionacylpyruvate hydrolase activity
COG categoryQ
BiGG ReactioniECO111_1330.ECO111_5214
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7914Ggra7914Gracilaria gracilis GNS1m malegenetig00000073_pilon 427924..428743 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7914.t1Ggra7914.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 427924..428743 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7914.t1.start1Ggra7914.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 427924..427926 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7914.t1.CDS1Ggra7914.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 427924..427986 +
Ggra7914.t1.CDS2Ggra7914.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000073_pilon 428055..428205 +
Ggra7914.t1.CDS3Ggra7914.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000073_pilon 428274..428743 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7914.t1.exon1Ggra7914.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 427924..427986 +
Ggra7914.t1.exon2Ggra7914.t1.exon2Gracilaria gracilis GNS1m maleexontig00000073_pilon 428055..428205 +
Ggra7914.t1.exon3Ggra7914.t1.exon3Gracilaria gracilis GNS1m maleexontig00000073_pilon 428274..428743 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7914.t1.intron1Ggra7914.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000073_pilon 427987..428054 +
Ggra7914.t1.intron2Ggra7914.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000073_pilon 428206..428273 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7914.t1.stop1Ggra7914.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 428741..428743 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7914.t1 ID=Ggra7914.t1|Name=Ggra7914.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=228bp
MANALRHADALLQKASRKAIAVGLNYVDHAKEMGSKADRIAPIWFFKPST
SYLAQNAGPIRIPPTAVAHHEVELGVVIGRPAKDVQAADAMKHVAGFVCA
IDVTARNWQSEAKKVGRPWAIAKGCDTFLPMSTVIPPDAIKMDERGVVDV
NLYLDVNGERRQHGSTKDMIWTIPELIEHISSHVTLEEWDLILTGTPSGV
GEFRPGDKITAGIEGLVEMEFGAALRN*
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spliced messenger RNA

>Ggra7914.t1 ID=Ggra7914.t1|Name=Ggra7914.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00000073_pilon:427924..428743+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAATGCGCTTCGTCATGCGGATGCTCTGCTTCAGAAAGCATCGCG
GAAAGCCATAGCCGTCGGTCTGAATTATGTCGATCACGCAAAAGAAATGG
GCTCCAAAGCTGATCGCATAGCCCCGATATGGTTCTTCAAGCCATCTACG
TCATATCTCGCTCAAAATGCCGGCCCGATTCGAATCCCACCAACCGCTGT
CGCTCATCATGAAGTGGAGCTCGGCGTTGTAATAGGTCGACCGGCAAAAG
ATGTTCAAGCTGCTGATGCGATGAAGCACGTCGCAGGATTCGTGTGCGCC
ATCGATGTCACCGCACGAAACTGGCAATCAGAAGCGAAGAAGGTCGGAAG
ACCTTGGGCGATTGCGAAAGGATGTGATACGTTCCTGCCAATGTCGACAG
TGATTCCTCCTGATGCCATCAAGATGGACGAGCGGGGAGTGGTTGATGTA
AATCTTTACCTTGATGTTAACGGAGAACGAAGGCAACATGGATCGACAAA
GGATATGATCTGGACGATTCCGGAACTGATCGAGCATATATCAAGCCATG
TTACATTGGAAGAATGGGATCTGATTCTAACTGGAACACCTTCAGGGGTT
GGGGAATTTCGACCTGGAGATAAGATCACTGCTGGTATAGAAGGTCTTGT
GGAAATGGAGTTTGGTGCTGCTTTGAGAAACTGA
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protein sequence of Ggra7914.t1

>Ggra7914.t1 ID=Ggra7914.t1|Name=Ggra7914.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=228bp
MANALRHADALLQKASRKAIAVGLNYVDHAKEMGSKADRIAPIWFFKPST
SYLAQNAGPIRIPPTAVAHHEVELGVVIGRPAKDVQAADAMKHVAGFVCA
IDVTARNWQSEAKKVGRPWAIAKGCDTFLPMSTVIPPDAIKMDERGVVDV
NLYLDVNGERRQHGSTKDMIWTIPELIEHISSHVTLEEWDLILTGTPSGV
GEFRPGDKITAGIEGLVEMEFGAALRN*
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mRNA from alignment at tig00000073_pilon:427924..428743+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7914.t1 ID=Ggra7914.t1|Name=Ggra7914.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=820bp|location=Sequence derived from alignment at tig00000073_pilon:427924..428743+ (Gracilaria gracilis GNS1m male)
ATGGCAAATGCGCTTCGTCATGCGGATGCTCTGCTTCAGAAAGCATCGCG
GAAAGCCATAGCCGTAAGTTCATGCCCGCGCAGTCGCATCTTGTGTTGAT
TGAAATCTGAGTCCTAACTCCTCATGCTCAGGTCGGTCTGAATTATGTCG
ATCACGCAAAAGAAATGGGCTCCAAAGCTGATCGCATAGCCCCGATATGG
TTCTTCAAGCCATCTACGTCATATCTCGCTCAAAATGCCGGCCCGATTCG
AATCCCACCAACCGCTGTCGCTCATCATGAAGGTAAAGTCTCAGCTCCTC
AATCGCGTACACTCCGTTATGAAGTTCGCTGACGAGTCTTTCCCTCTCAG
TGGAGCTCGGCGTTGTAATAGGTCGACCGGCAAAAGATGTTCAAGCTGCT
GATGCGATGAAGCACGTCGCAGGATTCGTGTGCGCCATCGATGTCACCGC
ACGAAACTGGCAATCAGAAGCGAAGAAGGTCGGAAGACCTTGGGCGATTG
CGAAAGGATGTGATACGTTCCTGCCAATGTCGACAGTGATTCCTCCTGAT
GCCATCAAGATGGACGAGCGGGGAGTGGTTGATGTAAATCTTTACCTTGA
TGTTAACGGAGAACGAAGGCAACATGGATCGACAAAGGATATGATCTGGA
CGATTCCGGAACTGATCGAGCATATATCAAGCCATGTTACATTGGAAGAA
TGGGATCTGATTCTAACTGGAACACCTTCAGGGGTTGGGGAATTTCGACC
TGGAGATAAGATCACTGCTGGTATAGAAGGTCTTGTGGAAATGGAGTTTG
GTGCTGCTTTGAGAAACTGA
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Coding sequence (CDS) from alignment at tig00000073_pilon:427924..428743+

>Ggra7914.t1 ID=Ggra7914.t1|Name=Ggra7914.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=684bp|location=Sequence derived from alignment at tig00000073_pilon:427924..428743+ (Gracilaria gracilis GNS1m male)
ATGGCAAATGCGCTTCGTCATGCGGATGCTCTGCTTCAGAAAGCATCGCG
GAAAGCCATAGCCGTCGGTCTGAATTATGTCGATCACGCAAAAGAAATGG
GCTCCAAAGCTGATCGCATAGCCCCGATATGGTTCTTCAAGCCATCTACG
TCATATCTCGCTCAAAATGCCGGCCCGATTCGAATCCCACCAACCGCTGT
CGCTCATCATGAAGTGGAGCTCGGCGTTGTAATAGGTCGACCGGCAAAAG
ATGTTCAAGCTGCTGATGCGATGAAGCACGTCGCAGGATTCGTGTGCGCC
ATCGATGTCACCGCACGAAACTGGCAATCAGAAGCGAAGAAGGTCGGAAG
ACCTTGGGCGATTGCGAAAGGATGTGATACGTTCCTGCCAATGTCGACAG
TGATTCCTCCTGATGCCATCAAGATGGACGAGCGGGGAGTGGTTGATGTA
AATCTTTACCTTGATGTTAACGGAGAACGAAGGCAACATGGATCGACAAA
GGATATGATCTGGACGATTCCGGAACTGATCGAGCATATATCAAGCCATG
TTACATTGGAAGAATGGGATCTGATTCTAACTGGAACACCTTCAGGGGTT
GGGGAATTTCGACCTGGAGATAAGATCACTGCTGGTATAGAAGGTCTTGT
GGAAATGGAGTTTGGTGCTGCTTTGAGAAACTGA
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