Ggra7911.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7911.t1
Unique Name	Ggra7911.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	650

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000073_pilon	contig	tig00000073_pilon:417278..419227 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3750.XP_008393083.1
PFAMs	CLP1_P
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K06947
GOs	GO:0000448,GO:0000460,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019205,GO:0022613,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0051731,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:1901360
Evalue	2.82e-32
EggNOG OGs	COG1341@1\|root,KOG2750@2759\|Eukaryota,37IFG@33090\|Viridiplantae,3GE9S@35493\|Streptophyta,4JD1D@91835\|fabids
Description	Polynucleotide 5'-hydroxyl-kinase NOL9-like
COG category	U
BRITE	ko00000,ko01000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7911	Ggra7911	Gracilaria gracilis GNS1m male	gene	tig00000073_pilon 417278..419227 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7911.t1.start1	Ggra7911.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000073_pilon 417278..417280 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7911.t1.CDS1	Ggra7911.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000073_pilon 417278..419227 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7911.t1.exon1	Ggra7911.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000073_pilon 417278..419227 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7911.t1.stop1	Ggra7911.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000073_pilon 419225..419227 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7911.t1	Ggra7911.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000073_pilon 417278..419227 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000073_pilon:417278..419227+
coding sequence from alignment at tig00000073_pilon:417278..419227+

mRNA sequence

>Ggra7911.t1 ID=Ggra7911.t1|Name=Ggra7911.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=650bp
MERRRSVQGKRTLWKRRKRKRPLFETLPAITAKADEKQTDSECLQPLTFQ
HHSILRVTQLPDGTDKNIEEDDPDPAPSEYSNSPPLSPHVPNLPQSKASD
ETPPATPSTNNLKKDCTRLISGTTNGTKYVALRVGAQAVPLSGSVWLSVV
HGCARIFGRTYTSECDPILIFSAPYAPFIVTIESATQNTSQKRRQSTATN
EFHPDAFLSSRIRQSLQDSKDLRKEGCIVVLSSTSSDPKVWEASDRFQVS
ADLRSTLQAFNEMAGFPSISPGEEAVDGMSIYPQSNRFGSFEEWPEWSSV
CDRLSDFLDQRTKPSDLRLLVCGGSGSGKSTFTRCIMNHLLERFPAVVLM
DSDVGQSEMSPPGLVSAYCVKEVRIGSAAASNRHIPLAARFFGDTTPRED
PDQYAMSIEHVCNEALAFAEQHGYPVVINSDGWINGTGADLLHHLTMHVT
ASHVAHLCLRGQEPRRGIVELASSFSEDRCFKLTTPRSERDLCFPPVLLR
ELHVASYFSKELAMGRVYNVHVDDVELICAEEESLNGMSIEGLNASMVAL
GKSVSVDSEKKRDWSVHGFGIVRGCDPEAGLLYICTPVCEEHLELCDTLL
FTGGIQLPQALFFASASPNLLKSGTAPFILSGSVHTAEAMRSRGTLARK*

spliced messenger RNA

>Ggra7911.t1 ID=Ggra7911.t1|Name=Ggra7911.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1950bp|location=Sequence derived from alignment at tig00000073_pilon:417278..419227+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAGGCGAAGATCAGTTCAAGGCAAGCGAACCTTGTGGAAGCGCCG
AAAGCGAAAGCGGCCTCTTTTCGAAACTCTGCCAGCAATCACTGCTAAAG
CTGACGAAAAGCAGACAGACAGCGAATGCTTGCAACCTCTGACTTTTCAA
CATCACTCTATTCTCCGTGTTACTCAGCTTCCGGACGGTACTGACAAGAA
TATTGAAGAAGATGATCCTGATCCTGCTCCATCCGAATATTCTAATTCGC
CCCCTCTATCGCCGCATGTACCTAATTTGCCTCAGAGCAAGGCGAGTGAT
GAGACGCCCCCGGCTACGCCTTCGACAAACAATCTGAAGAAAGACTGTAC
ACGCCTCATATCGGGTACCACAAATGGAACAAAATACGTCGCGCTTAGAG
TGGGAGCGCAAGCTGTACCCCTATCAGGATCAGTTTGGCTTTCAGTTGTA
CATGGCTGCGCCAGAATTTTCGGCCGAACGTACACGAGCGAGTGCGATCC
TATTCTGATATTCTCCGCCCCGTATGCCCCATTTATCGTCACCATTGAGT
CCGCTACGCAGAACACTTCACAGAAACGTCGGCAATCGACAGCAACAAAC
GAGTTTCATCCGGATGCTTTTCTGAGCAGCCGCATCCGCCAGTCTCTACA
AGATTCTAAGGATCTTCGAAAGGAAGGTTGTATTGTTGTGCTTTCGTCCA
CCTCATCTGATCCTAAAGTATGGGAAGCGTCCGATAGATTCCAAGTTTCA
GCAGATCTTCGAAGCACGCTACAAGCGTTTAACGAAATGGCAGGTTTCCC
ATCAATCTCGCCCGGAGAGGAAGCGGTGGACGGTATGTCTATTTATCCCC
AGTCAAATAGGTTTGGAAGCTTTGAAGAATGGCCGGAGTGGAGTAGCGTC
TGTGATCGTTTAAGTGATTTCTTGGATCAAAGGACAAAACCATCTGATCT
AAGATTACTTGTATGCGGCGGAAGCGGATCTGGGAAGTCTACGTTCACCA
GATGCATCATGAATCATCTTCTTGAAAGGTTCCCTGCGGTTGTTCTAATG
GATTCCGACGTCGGGCAGTCTGAAATGAGTCCACCTGGACTTGTTTCTGC
GTATTGTGTGAAGGAAGTAAGGATAGGTTCAGCTGCTGCTTCCAATAGAC
ATATCCCACTAGCCGCTCGCTTTTTTGGTGACACGACCCCTCGTGAAGAT
CCAGACCAATACGCGATGTCTATTGAACATGTGTGCAACGAGGCTTTGGC
CTTTGCAGAACAGCACGGCTATCCCGTTGTCATCAACTCTGATGGCTGGA
TAAACGGGACTGGAGCAGATTTGCTCCATCACCTTACCATGCATGTAACT
GCAAGTCATGTAGCACATCTGTGCCTTAGAGGTCAGGAGCCTCGCCGAGG
TATTGTCGAGCTTGCTTCAAGCTTCTCGGAAGATCGCTGCTTCAAGTTAA
CTACTCCTCGAAGCGAAAGAGATCTGTGCTTTCCCCCGGTTTTGTTAAGA
GAGCTCCATGTTGCGTCATACTTCTCAAAAGAACTCGCAATGGGCAGAGT
GTACAATGTGCACGTGGATGATGTAGAATTGATCTGTGCAGAGGAAGAAT
CCTTGAATGGAATGTCCATAGAAGGACTGAATGCTTCTATGGTTGCGCTT
GGAAAGAGTGTCAGCGTTGATAGTGAGAAGAAGCGAGACTGGTCTGTTCA
TGGATTCGGAATAGTAAGAGGTTGTGACCCAGAGGCAGGTCTCTTGTATA
TTTGTACACCAGTTTGTGAAGAACATCTAGAGCTGTGCGACACATTGCTT
TTCACAGGCGGTATTCAACTACCCCAAGCTTTGTTTTTTGCCAGTGCCTC
ACCAAACCTCTTGAAGTCTGGTACGGCTCCGTTTATTCTGTCAGGCTCAG
TTCATACGGCAGAAGCAATGCGTAGTCGGGGCACTCTCGCTCGAAAGTAA

protein sequence of Ggra7911.t1

>Ggra7911.t1 ID=Ggra7911.t1|Name=Ggra7911.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=650bp
MERRRSVQGKRTLWKRRKRKRPLFETLPAITAKADEKQTDSECLQPLTFQ
HHSILRVTQLPDGTDKNIEEDDPDPAPSEYSNSPPLSPHVPNLPQSKASD
ETPPATPSTNNLKKDCTRLISGTTNGTKYVALRVGAQAVPLSGSVWLSVV
HGCARIFGRTYTSECDPILIFSAPYAPFIVTIESATQNTSQKRRQSTATN
EFHPDAFLSSRIRQSLQDSKDLRKEGCIVVLSSTSSDPKVWEASDRFQVS
ADLRSTLQAFNEMAGFPSISPGEEAVDGMSIYPQSNRFGSFEEWPEWSSV
CDRLSDFLDQRTKPSDLRLLVCGGSGSGKSTFTRCIMNHLLERFPAVVLM
DSDVGQSEMSPPGLVSAYCVKEVRIGSAAASNRHIPLAARFFGDTTPRED
PDQYAMSIEHVCNEALAFAEQHGYPVVINSDGWINGTGADLLHHLTMHVT
ASHVAHLCLRGQEPRRGIVELASSFSEDRCFKLTTPRSERDLCFPPVLLR
ELHVASYFSKELAMGRVYNVHVDDVELICAEEESLNGMSIEGLNASMVAL
GKSVSVDSEKKRDWSVHGFGIVRGCDPEAGLLYICTPVCEEHLELCDTLL
FTGGIQLPQALFFASASPNLLKSGTAPFILSGSVHTAEAMRSRGTLARK*

mRNA from alignment at tig00000073_pilon:417278..419227+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7911.t1 ID=Ggra7911.t1|Name=Ggra7911.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1950bp|location=Sequence derived from alignment at tig00000073_pilon:417278..419227+ (Gracilaria gracilis GNS1m male)
ATGGAAAGGCGAAGATCAGTTCAAGGCAAGCGAACCTTGTGGAAGCGCCG
AAAGCGAAAGCGGCCTCTTTTCGAAACTCTGCCAGCAATCACTGCTAAAG
CTGACGAAAAGCAGACAGACAGCGAATGCTTGCAACCTCTGACTTTTCAA
CATCACTCTATTCTCCGTGTTACTCAGCTTCCGGACGGTACTGACAAGAA
TATTGAAGAAGATGATCCTGATCCTGCTCCATCCGAATATTCTAATTCGC
CCCCTCTATCGCCGCATGTACCTAATTTGCCTCAGAGCAAGGCGAGTGAT
GAGACGCCCCCGGCTACGCCTTCGACAAACAATCTGAAGAAAGACTGTAC
ACGCCTCATATCGGGTACCACAAATGGAACAAAATACGTCGCGCTTAGAG
TGGGAGCGCAAGCTGTACCCCTATCAGGATCAGTTTGGCTTTCAGTTGTA
CATGGCTGCGCCAGAATTTTCGGCCGAACGTACACGAGCGAGTGCGATCC
TATTCTGATATTCTCCGCCCCGTATGCCCCATTTATCGTCACCATTGAGT
CCGCTACGCAGAACACTTCACAGAAACGTCGGCAATCGACAGCAACAAAC
GAGTTTCATCCGGATGCTTTTCTGAGCAGCCGCATCCGCCAGTCTCTACA
AGATTCTAAGGATCTTCGAAAGGAAGGTTGTATTGTTGTGCTTTCGTCCA
CCTCATCTGATCCTAAAGTATGGGAAGCGTCCGATAGATTCCAAGTTTCA
GCAGATCTTCGAAGCACGCTACAAGCGTTTAACGAAATGGCAGGTTTCCC
ATCAATCTCGCCCGGAGAGGAAGCGGTGGACGGTATGTCTATTTATCCCC
AGTCAAATAGGTTTGGAAGCTTTGAAGAATGGCCGGAGTGGAGTAGCGTC
TGTGATCGTTTAAGTGATTTCTTGGATCAAAGGACAAAACCATCTGATCT
AAGATTACTTGTATGCGGCGGAAGCGGATCTGGGAAGTCTACGTTCACCA
GATGCATCATGAATCATCTTCTTGAAAGGTTCCCTGCGGTTGTTCTAATG
GATTCCGACGTCGGGCAGTCTGAAATGAGTCCACCTGGACTTGTTTCTGC
GTATTGTGTGAAGGAAGTAAGGATAGGTTCAGCTGCTGCTTCCAATAGAC
ATATCCCACTAGCCGCTCGCTTTTTTGGTGACACGACCCCTCGTGAAGAT
CCAGACCAATACGCGATGTCTATTGAACATGTGTGCAACGAGGCTTTGGC
CTTTGCAGAACAGCACGGCTATCCCGTTGTCATCAACTCTGATGGCTGGA
TAAACGGGACTGGAGCAGATTTGCTCCATCACCTTACCATGCATGTAACT
GCAAGTCATGTAGCACATCTGTGCCTTAGAGGTCAGGAGCCTCGCCGAGG
TATTGTCGAGCTTGCTTCAAGCTTCTCGGAAGATCGCTGCTTCAAGTTAA
CTACTCCTCGAAGCGAAAGAGATCTGTGCTTTCCCCCGGTTTTGTTAAGA
GAGCTCCATGTTGCGTCATACTTCTCAAAAGAACTCGCAATGGGCAGAGT
GTACAATGTGCACGTGGATGATGTAGAATTGATCTGTGCAGAGGAAGAAT
CCTTGAATGGAATGTCCATAGAAGGACTGAATGCTTCTATGGTTGCGCTT
GGAAAGAGTGTCAGCGTTGATAGTGAGAAGAAGCGAGACTGGTCTGTTCA
TGGATTCGGAATAGTAAGAGGTTGTGACCCAGAGGCAGGTCTCTTGTATA
TTTGTACACCAGTTTGTGAAGAACATCTAGAGCTGTGCGACACATTGCTT
TTCACAGGCGGTATTCAACTACCCCAAGCTTTGTTTTTTGCCAGTGCCTC
ACCAAACCTCTTGAAGTCTGGTACGGCTCCGTTTATTCTGTCAGGCTCAG
TTCATACGGCAGAAGCAATGCGTAGTCGGGGCACTCTCGCTCGAAAGTAA

Coding sequence (CDS) from alignment at tig00000073_pilon:417278..419227+

>Ggra7911.t1 ID=Ggra7911.t1|Name=Ggra7911.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1950bp|location=Sequence derived from alignment at tig00000073_pilon:417278..419227+ (Gracilaria gracilis GNS1m male)
ATGGAAAGGCGAAGATCAGTTCAAGGCAAGCGAACCTTGTGGAAGCGCCG
AAAGCGAAAGCGGCCTCTTTTCGAAACTCTGCCAGCAATCACTGCTAAAG
CTGACGAAAAGCAGACAGACAGCGAATGCTTGCAACCTCTGACTTTTCAA
CATCACTCTATTCTCCGTGTTACTCAGCTTCCGGACGGTACTGACAAGAA
TATTGAAGAAGATGATCCTGATCCTGCTCCATCCGAATATTCTAATTCGC
CCCCTCTATCGCCGCATGTACCTAATTTGCCTCAGAGCAAGGCGAGTGAT
GAGACGCCCCCGGCTACGCCTTCGACAAACAATCTGAAGAAAGACTGTAC
ACGCCTCATATCGGGTACCACAAATGGAACAAAATACGTCGCGCTTAGAG
TGGGAGCGCAAGCTGTACCCCTATCAGGATCAGTTTGGCTTTCAGTTGTA
CATGGCTGCGCCAGAATTTTCGGCCGAACGTACACGAGCGAGTGCGATCC
TATTCTGATATTCTCCGCCCCGTATGCCCCATTTATCGTCACCATTGAGT
CCGCTACGCAGAACACTTCACAGAAACGTCGGCAATCGACAGCAACAAAC
GAGTTTCATCCGGATGCTTTTCTGAGCAGCCGCATCCGCCAGTCTCTACA
AGATTCTAAGGATCTTCGAAAGGAAGGTTGTATTGTTGTGCTTTCGTCCA
CCTCATCTGATCCTAAAGTATGGGAAGCGTCCGATAGATTCCAAGTTTCA
GCAGATCTTCGAAGCACGCTACAAGCGTTTAACGAAATGGCAGGTTTCCC
ATCAATCTCGCCCGGAGAGGAAGCGGTGGACGGTATGTCTATTTATCCCC
AGTCAAATAGGTTTGGAAGCTTTGAAGAATGGCCGGAGTGGAGTAGCGTC
TGTGATCGTTTAAGTGATTTCTTGGATCAAAGGACAAAACCATCTGATCT
AAGATTACTTGTATGCGGCGGAAGCGGATCTGGGAAGTCTACGTTCACCA
GATGCATCATGAATCATCTTCTTGAAAGGTTCCCTGCGGTTGTTCTAATG
GATTCCGACGTCGGGCAGTCTGAAATGAGTCCACCTGGACTTGTTTCTGC
GTATTGTGTGAAGGAAGTAAGGATAGGTTCAGCTGCTGCTTCCAATAGAC
ATATCCCACTAGCCGCTCGCTTTTTTGGTGACACGACCCCTCGTGAAGAT
CCAGACCAATACGCGATGTCTATTGAACATGTGTGCAACGAGGCTTTGGC
CTTTGCAGAACAGCACGGCTATCCCGTTGTCATCAACTCTGATGGCTGGA
TAAACGGGACTGGAGCAGATTTGCTCCATCACCTTACCATGCATGTAACT
GCAAGTCATGTAGCACATCTGTGCCTTAGAGGTCAGGAGCCTCGCCGAGG
TATTGTCGAGCTTGCTTCAAGCTTCTCGGAAGATCGCTGCTTCAAGTTAA
CTACTCCTCGAAGCGAAAGAGATCTGTGCTTTCCCCCGGTTTTGTTAAGA
GAGCTCCATGTTGCGTCATACTTCTCAAAAGAACTCGCAATGGGCAGAGT
GTACAATGTGCACGTGGATGATGTAGAATTGATCTGTGCAGAGGAAGAAT
CCTTGAATGGAATGTCCATAGAAGGACTGAATGCTTCTATGGTTGCGCTT
GGAAAGAGTGTCAGCGTTGATAGTGAGAAGAAGCGAGACTGGTCTGTTCA
TGGATTCGGAATAGTAAGAGGTTGTGACCCAGAGGCAGGTCTCTTGTATA
TTTGTACACCAGTTTGTGAAGAACATCTAGAGCTGTGCGACACATTGCTT
TTCACAGGCGGTATTCAACTACCCCAAGCTTTGTTTTTTGCCAGTGCCTC
ACCAAACCTCTTGAAGTCTGGTACGGCTCCGTTTATTCTGTCAGGCTCAG
TTCATACGGCAGAAGCAATGCGTAGTCGGGGCACTCTCGCTCGAAAGTAA