Ggra7908.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7908.t1
Unique NameGgra7908.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length438
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:412771..414148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706843.1
PFAMsDUF1730,Fer4_16
Max annot lvl2759|Eukaryota
Evalue3.42e-112
EggNOG OGsCOG1600@1|root,2S0QE@2759|Eukaryota
Description4Fe-4S double cluster binding domain
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7908Ggra7908Gracilaria gracilis GNS1m malegenetig00000073_pilon 412771..414148 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7908.t1Ggra7908.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 412771..414148 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7908.t1.stop1Ggra7908.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 412771..412773 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7908.t1.CDS1Ggra7908.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 412771..413872 -
Ggra7908.t1.CDS2Ggra7908.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000073_pilon 413937..414148 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7908.t1.exon1Ggra7908.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 412771..413872 -
Ggra7908.t1.exon2Ggra7908.t1.exon2Gracilaria gracilis GNS1m maleexontig00000073_pilon 413937..414148 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7908.t1.intron1Ggra7908.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000073_pilon 413873..413936 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7908.t1.start1Ggra7908.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 414146..414148 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7908.t1 ID=Ggra7908.t1|Name=Ggra7908.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=438bp
MAVVRVWSRGMARRNWVGNKHDKVESCPEKLQQIKEELKSKAQSLGLSLV
GVTSARKSSRFNKYKEWLANSYHGELDYMERADRVARRENPQLILPGAQS
VIMVGMYYWPGTRGFPKLHDVRRLNERNDSSSGEATRGVVSSYAWGEDYH
TILQKKLKTLARHLNDKAGGIGRFYVDTGAILERDFAERAGLGFIGKNSL
LINARGGSGFFIGELFSTVALELDGDEERGTRARGRGEAGCGKCTRCMTA
CPTGAIVSEHVVDARKCISYLTIEHKGVIGERLRHQMGNRIYGCDICQQV
CPWNRVQWARTPPWPHATRGFSPLFGAAAPRTASPPLLPLLQLDEAAFQT
RFAASPMRRIGRARLARNVAVALGNVGGAHELRALRRAARSHDSALVRRH
ARWAVRQLRARLARAPRARRPNGPLPSVTRRRRCRRG*
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spliced messenger RNA

>Ggra7908.t1 ID=Ggra7908.t1|Name=Ggra7908.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1314bp|location=Sequence derived from alignment at tig00000073_pilon:412771..414148- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGTGGTGCGAGTATGGAGCAGAGGGATGGCACGCAGAAACTGGGT
TGGTAACAAGCACGACAAGGTGGAGAGCTGCCCTGAAAAGCTTCAACAAA
TAAAGGAAGAGCTCAAGTCAAAGGCGCAATCTCTCGGACTGAGCCTGGTG
GGAGTAACATCAGCTAGAAAGTCTTCTCGTTTCAACAAGTACAAGGAATG
GCTTGCAAACAGTTACCACGGTGAGTTGGATTACATGGAACGCGCGGACC
GAGTGGCTCGGCGAGAAAACCCGCAGCTGATCCTGCCGGGAGCACAATCA
GTGATCATGGTGGGCATGTACTACTGGCCAGGCACGCGCGGCTTCCCAAA
GCTGCACGACGTACGACGACTAAACGAGCGCAACGACAGCAGTTCAGGCG
AAGCGACGCGCGGAGTGGTGTCCAGCTACGCGTGGGGCGAAGACTATCAC
ACCATCTTGCAGAAGAAACTGAAGACTCTGGCGCGACATTTGAACGACAA
GGCGGGTGGAATAGGGCGCTTCTACGTAGACACGGGCGCGATCTTGGAGA
GAGACTTTGCAGAGCGCGCGGGACTGGGCTTCATCGGCAAGAACTCACTG
CTGATCAACGCGCGGGGCGGCAGCGGGTTCTTCATCGGCGAGCTGTTCTC
CACGGTGGCGCTGGAGCTGGACGGCGACGAGGAGCGCGGCACGCGGGCGC
GCGGGCGCGGCGAAGCGGGGTGCGGCAAGTGCACGCGGTGCATGACGGCG
TGCCCGACGGGGGCGATTGTGTCGGAGCACGTGGTGGACGCGCGCAAGTG
TATCAGCTACCTGACGATCGAGCACAAGGGCGTGATCGGCGAGCGGCTAC
GACACCAAATGGGCAACCGCATCTACGGCTGCGACATCTGCCAGCAGGTG
TGCCCGTGGAACCGCGTGCAGTGGGCGCGCACGCCGCCGTGGCCGCACGC
CACGCGCGGCTTCAGTCCGCTGTTCGGCGCCGCCGCGCCGCGCACGGCGT
CGCCGCCGCTGCTGCCGCTGCTGCAGCTGGACGAGGCCGCCTTCCAGACG
CGCTTCGCCGCGTCGCCCATGCGCCGCATCGGCCGCGCGCGGCTGGCGCG
TAACGTCGCAGTGGCGCTGGGCAACGTCGGCGGCGCGCACGAGCTGCGCG
CGCTGCGCCGCGCCGCGCGCAGCCATGACAGCGCGCTGGTGCGCCGACAC
GCGCGCTGGGCCGTGCGCCAGCTGCGCGCGCGACTGGCGCGTGCGCCGCG
CGCGCGCCGCCCCAACGGTCCGCTGCCGTCAGTGACGCGCCGCCGCCGCT
GCCGCCGCGGCTGA
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protein sequence of Ggra7908.t1

>Ggra7908.t1 ID=Ggra7908.t1|Name=Ggra7908.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=438bp
MAVVRVWSRGMARRNWVGNKHDKVESCPEKLQQIKEELKSKAQSLGLSLV
GVTSARKSSRFNKYKEWLANSYHGELDYMERADRVARRENPQLILPGAQS
VIMVGMYYWPGTRGFPKLHDVRRLNERNDSSSGEATRGVVSSYAWGEDYH
TILQKKLKTLARHLNDKAGGIGRFYVDTGAILERDFAERAGLGFIGKNSL
LINARGGSGFFIGELFSTVALELDGDEERGTRARGRGEAGCGKCTRCMTA
CPTGAIVSEHVVDARKCISYLTIEHKGVIGERLRHQMGNRIYGCDICQQV
CPWNRVQWARTPPWPHATRGFSPLFGAAAPRTASPPLLPLLQLDEAAFQT
RFAASPMRRIGRARLARNVAVALGNVGGAHELRALRRAARSHDSALVRRH
ARWAVRQLRARLARAPRARRPNGPLPSVTRRRRCRRG*
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mRNA from alignment at tig00000073_pilon:412771..414148-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7908.t1 ID=Ggra7908.t1|Name=Ggra7908.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1378bp|location=Sequence derived from alignment at tig00000073_pilon:412771..414148- (Gracilaria gracilis GNS1m male)
ATGGCAGTGGTGCGAGTATGGAGCAGAGGGATGGCACGCAGAAACTGGGT
TGGTAACAAGCACGACAAGGTGGAGAGCTGCCCTGAAAAGCTTCAACAAA
TAAAGGAAGAGCTCAAGTCAAAGGCGCAATCTCTCGGACTGAGCCTGGTG
GGAGTAACATCAGCTAGAAAGTCTTCTCGTTTCAACAAGTACAAGGAATG
GCTTGCAAACAGGTAAGCTTGCGGACGCATGCACATTGTTAATGATAGTA
AGCAAGAACTGACCACAACAAGACAGTTACCACGGTGAGTTGGATTACAT
GGAACGCGCGGACCGAGTGGCTCGGCGAGAAAACCCGCAGCTGATCCTGC
CGGGAGCACAATCAGTGATCATGGTGGGCATGTACTACTGGCCAGGCACG
CGCGGCTTCCCAAAGCTGCACGACGTACGACGACTAAACGAGCGCAACGA
CAGCAGTTCAGGCGAAGCGACGCGCGGAGTGGTGTCCAGCTACGCGTGGG
GCGAAGACTATCACACCATCTTGCAGAAGAAACTGAAGACTCTGGCGCGA
CATTTGAACGACAAGGCGGGTGGAATAGGGCGCTTCTACGTAGACACGGG
CGCGATCTTGGAGAGAGACTTTGCAGAGCGCGCGGGACTGGGCTTCATCG
GCAAGAACTCACTGCTGATCAACGCGCGGGGCGGCAGCGGGTTCTTCATC
GGCGAGCTGTTCTCCACGGTGGCGCTGGAGCTGGACGGCGACGAGGAGCG
CGGCACGCGGGCGCGCGGGCGCGGCGAAGCGGGGTGCGGCAAGTGCACGC
GGTGCATGACGGCGTGCCCGACGGGGGCGATTGTGTCGGAGCACGTGGTG
GACGCGCGCAAGTGTATCAGCTACCTGACGATCGAGCACAAGGGCGTGAT
CGGCGAGCGGCTACGACACCAAATGGGCAACCGCATCTACGGCTGCGACA
TCTGCCAGCAGGTGTGCCCGTGGAACCGCGTGCAGTGGGCGCGCACGCCG
CCGTGGCCGCACGCCACGCGCGGCTTCAGTCCGCTGTTCGGCGCCGCCGC
GCCGCGCACGGCGTCGCCGCCGCTGCTGCCGCTGCTGCAGCTGGACGAGG
CCGCCTTCCAGACGCGCTTCGCCGCGTCGCCCATGCGCCGCATCGGCCGC
GCGCGGCTGGCGCGTAACGTCGCAGTGGCGCTGGGCAACGTCGGCGGCGC
GCACGAGCTGCGCGCGCTGCGCCGCGCCGCGCGCAGCCATGACAGCGCGC
TGGTGCGCCGACACGCGCGCTGGGCCGTGCGCCAGCTGCGCGCGCGACTG
GCGCGTGCGCCGCGCGCGCGCCGCCCCAACGGTCCGCTGCCGTCAGTGAC
GCGCCGCCGCCGCTGCCGCCGCGGCTGA
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Coding sequence (CDS) from alignment at tig00000073_pilon:412771..414148-

>Ggra7908.t1 ID=Ggra7908.t1|Name=Ggra7908.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1314bp|location=Sequence derived from alignment at tig00000073_pilon:412771..414148- (Gracilaria gracilis GNS1m male)
ATGGCAGTGGTGCGAGTATGGAGCAGAGGGATGGCACGCAGAAACTGGGT
TGGTAACAAGCACGACAAGGTGGAGAGCTGCCCTGAAAAGCTTCAACAAA
TAAAGGAAGAGCTCAAGTCAAAGGCGCAATCTCTCGGACTGAGCCTGGTG
GGAGTAACATCAGCTAGAAAGTCTTCTCGTTTCAACAAGTACAAGGAATG
GCTTGCAAACAGTTACCACGGTGAGTTGGATTACATGGAACGCGCGGACC
GAGTGGCTCGGCGAGAAAACCCGCAGCTGATCCTGCCGGGAGCACAATCA
GTGATCATGGTGGGCATGTACTACTGGCCAGGCACGCGCGGCTTCCCAAA
GCTGCACGACGTACGACGACTAAACGAGCGCAACGACAGCAGTTCAGGCG
AAGCGACGCGCGGAGTGGTGTCCAGCTACGCGTGGGGCGAAGACTATCAC
ACCATCTTGCAGAAGAAACTGAAGACTCTGGCGCGACATTTGAACGACAA
GGCGGGTGGAATAGGGCGCTTCTACGTAGACACGGGCGCGATCTTGGAGA
GAGACTTTGCAGAGCGCGCGGGACTGGGCTTCATCGGCAAGAACTCACTG
CTGATCAACGCGCGGGGCGGCAGCGGGTTCTTCATCGGCGAGCTGTTCTC
CACGGTGGCGCTGGAGCTGGACGGCGACGAGGAGCGCGGCACGCGGGCGC
GCGGGCGCGGCGAAGCGGGGTGCGGCAAGTGCACGCGGTGCATGACGGCG
TGCCCGACGGGGGCGATTGTGTCGGAGCACGTGGTGGACGCGCGCAAGTG
TATCAGCTACCTGACGATCGAGCACAAGGGCGTGATCGGCGAGCGGCTAC
GACACCAAATGGGCAACCGCATCTACGGCTGCGACATCTGCCAGCAGGTG
TGCCCGTGGAACCGCGTGCAGTGGGCGCGCACGCCGCCGTGGCCGCACGC
CACGCGCGGCTTCAGTCCGCTGTTCGGCGCCGCCGCGCCGCGCACGGCGT
CGCCGCCGCTGCTGCCGCTGCTGCAGCTGGACGAGGCCGCCTTCCAGACG
CGCTTCGCCGCGTCGCCCATGCGCCGCATCGGCCGCGCGCGGCTGGCGCG
TAACGTCGCAGTGGCGCTGGGCAACGTCGGCGGCGCGCACGAGCTGCGCG
CGCTGCGCCGCGCCGCGCGCAGCCATGACAGCGCGCTGGTGCGCCGACAC
GCGCGCTGGGCCGTGCGCCAGCTGCGCGCGCGACTGGCGCGTGCGCCGCG
CGCGCGCCGCCCCAACGGTCCGCTGCCGTCAGTGACGCGCCGCCGCCGCT
GCCGCCGCGGCTGA
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