Ggra7904.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7904.t1
Unique Name	Ggra7904.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	544

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000073_pilon	contig	tig00000073_pilon:403150..404781 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CME037CT
PFAMs	DALR_2,tRNA-synt_1e
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00055,RC00523
KEGG ko	ko:K01883
KEGG Reaction	R03650
KEGG Pathway	ko00970,map00970
KEGG Module	M00359,M00360
GOs	GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Evalue	8.66e-161
EggNOG OGs	COG0215@1\|root,KOG2007@2759\|Eukaryota
EC	6.1.1.16
Description	cysteinyl-tRNA aminoacylation
COG category	J
BRITE	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7904	Ggra7904	Gracilaria gracilis GNS1m male	gene	tig00000073_pilon 403150..404781 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7904.t1.start1	Ggra7904.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000073_pilon 403150..403152 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7904.t1.CDS1	Ggra7904.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000073_pilon 403150..404781 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7904.t1.exon1	Ggra7904.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000073_pilon 403150..404781 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7904.t1.stop1	Ggra7904.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000073_pilon 404779..404781 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7904.t1	Ggra7904.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000073_pilon 403150..404781 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000073_pilon:403150..404781+
coding sequence from alignment at tig00000073_pilon:403150..404781+

mRNA sequence

>Ggra7904.t1 ID=Ggra7904.t1|Name=Ggra7904.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=544bp
MSESIAFTSAAPLQRTSLLSVPLIEPHSFCRQQAWSARASVRAHLSVPPA
TSNVDASSIENALQQHGLKFFNSMTRQKETFRTIEPGIVRFYSCGPTVYD
FAHIGNFRAFLTYDVIKRWLIYKGYHVRHVMNLTDVDDKIIARIQREQCS
AAQLTNRYADAFFDDLSLLNVIPADHYPRATQHIHHIEHFINGLKTRGYA
YEKQGSTYFSVSSFEQYGRLAQLDKRECGSASASDSDEYDKDDVRDFALW
KSHKGEDGNVFWDNSLGKGRPGWHIECSCMAMQYLGPQLDIHAGGIDLVF
PHHENEIAQSEALTGKLFASFWLHNGFVNIDNEKMSKSLGNFRTLRDIVD
KPDDARAFRYLVVASQYRSALAFTDKSLKSSRNTIKRLDALRTRLQDTVG
VGGEEEIQRVVTDASQNFINAMDDDLNTPRAAAAMFSVVNAAEKMLKADK
LGTNASKLVLDCLADMDRVFGIFYKPEISVEDSSSSEEDSNAPEELVLLL
EQRAQARKAKDFARADQIRDVITAAGFCIMDTPQGAKLQRIES*

spliced messenger RNA

>Ggra7904.t1 ID=Ggra7904.t1|Name=Ggra7904.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1632bp|location=Sequence derived from alignment at tig00000073_pilon:403150..404781+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGAGAGTATCGCTTTCACATCTGCAGCGCCACTCCAGCGCACCTC
TCTCCTCTCAGTGCCACTCATCGAACCACACTCCTTTTGTCGACAACAAG
CCTGGTCAGCCCGTGCATCTGTTCGCGCACATCTGTCCGTGCCCCCAGCG
ACAAGCAATGTAGATGCCTCCTCCATCGAAAATGCACTCCAACAGCACGG
TCTCAAATTCTTTAACTCCATGACCAGACAGAAGGAGACATTTCGAACCA
TCGAGCCAGGAATTGTGCGCTTCTACTCGTGTGGTCCAACCGTGTACGAC
TTTGCGCACATTGGCAATTTCAGAGCATTTCTTACGTACGACGTTATCAA
GCGATGGCTCATATACAAAGGATACCATGTGCGTCACGTCATGAATCTCA
CAGACGTGGATGACAAGATCATCGCACGCATCCAGCGTGAGCAGTGTTCC
GCCGCTCAACTCACAAACAGATATGCAGATGCGTTTTTCGACGATCTCAG
CCTTCTCAACGTCATTCCAGCTGACCATTACCCGCGCGCTACGCAGCATA
TCCACCACATTGAACACTTTATCAACGGCTTAAAAACACGCGGATATGCC
TACGAAAAGCAGGGATCAACTTACTTTAGTGTTTCAAGCTTTGAGCAATA
CGGCCGCCTCGCCCAACTCGACAAAAGGGAATGCGGGAGCGCAAGCGCTT
CGGATAGCGACGAGTACGACAAAGACGATGTGCGAGACTTTGCTTTATGG
AAATCACACAAAGGAGAAGATGGGAACGTGTTTTGGGACAACTCTCTTGG
AAAGGGGCGCCCCGGATGGCATATCGAGTGTTCATGTATGGCGATGCAGT
ATCTCGGACCTCAGCTTGACATTCACGCCGGAGGAATAGACCTGGTCTTC
CCACATCACGAAAACGAAATAGCGCAGTCTGAGGCACTAACAGGCAAACT
GTTTGCATCATTCTGGCTGCATAACGGCTTCGTCAACATTGACAACGAAA
AGATGTCAAAGAGCCTCGGAAACTTTCGCACGCTACGAGACATTGTCGAC
AAACCCGATGACGCGCGTGCTTTCCGGTATCTCGTGGTGGCATCGCAATA
CCGTTCGGCGTTGGCCTTCACGGATAAGAGCCTCAAGTCATCGCGGAATA
CAATAAAGCGGCTGGACGCGTTGCGAACACGGCTTCAGGACACCGTTGGC
GTGGGCGGCGAGGAAGAGATACAAAGGGTCGTAACTGACGCATCGCAGAA
TTTTATCAACGCAATGGACGATGACCTTAACACACCCCGAGCCGCGGCGG
CTATGTTCTCCGTAGTCAACGCGGCAGAGAAAATGCTGAAAGCCGACAAG
TTGGGAACGAACGCGTCCAAACTAGTTCTCGATTGCCTCGCGGATATGGA
CAGAGTATTTGGCATATTCTACAAACCAGAGATCAGCGTCGAAGATAGCA
GTTCGAGCGAGGAGGATAGCAATGCACCAGAAGAACTTGTTCTGTTGTTA
GAGCAGAGAGCGCAGGCTCGAAAGGCGAAAGACTTTGCACGTGCAGATCA
AATACGGGACGTTATTACAGCGGCCGGGTTCTGCATTATGGACACGCCGC
AAGGTGCTAAGCTGCAACGCATAGAAAGCTAG

protein sequence of Ggra7904.t1

>Ggra7904.t1 ID=Ggra7904.t1|Name=Ggra7904.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=544bp
MSESIAFTSAAPLQRTSLLSVPLIEPHSFCRQQAWSARASVRAHLSVPPA
TSNVDASSIENALQQHGLKFFNSMTRQKETFRTIEPGIVRFYSCGPTVYD
FAHIGNFRAFLTYDVIKRWLIYKGYHVRHVMNLTDVDDKIIARIQREQCS
AAQLTNRYADAFFDDLSLLNVIPADHYPRATQHIHHIEHFINGLKTRGYA
YEKQGSTYFSVSSFEQYGRLAQLDKRECGSASASDSDEYDKDDVRDFALW
KSHKGEDGNVFWDNSLGKGRPGWHIECSCMAMQYLGPQLDIHAGGIDLVF
PHHENEIAQSEALTGKLFASFWLHNGFVNIDNEKMSKSLGNFRTLRDIVD
KPDDARAFRYLVVASQYRSALAFTDKSLKSSRNTIKRLDALRTRLQDTVG
VGGEEEIQRVVTDASQNFINAMDDDLNTPRAAAAMFSVVNAAEKMLKADK
LGTNASKLVLDCLADMDRVFGIFYKPEISVEDSSSSEEDSNAPEELVLLL
EQRAQARKAKDFARADQIRDVITAAGFCIMDTPQGAKLQRIES*

mRNA from alignment at tig00000073_pilon:403150..404781+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7904.t1 ID=Ggra7904.t1|Name=Ggra7904.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1632bp|location=Sequence derived from alignment at tig00000073_pilon:403150..404781+ (Gracilaria gracilis GNS1m male)
ATGTCAGAGAGTATCGCTTTCACATCTGCAGCGCCACTCCAGCGCACCTC
TCTCCTCTCAGTGCCACTCATCGAACCACACTCCTTTTGTCGACAACAAG
CCTGGTCAGCCCGTGCATCTGTTCGCGCACATCTGTCCGTGCCCCCAGCG
ACAAGCAATGTAGATGCCTCCTCCATCGAAAATGCACTCCAACAGCACGG
TCTCAAATTCTTTAACTCCATGACCAGACAGAAGGAGACATTTCGAACCA
TCGAGCCAGGAATTGTGCGCTTCTACTCGTGTGGTCCAACCGTGTACGAC
TTTGCGCACATTGGCAATTTCAGAGCATTTCTTACGTACGACGTTATCAA
GCGATGGCTCATATACAAAGGATACCATGTGCGTCACGTCATGAATCTCA
CAGACGTGGATGACAAGATCATCGCACGCATCCAGCGTGAGCAGTGTTCC
GCCGCTCAACTCACAAACAGATATGCAGATGCGTTTTTCGACGATCTCAG
CCTTCTCAACGTCATTCCAGCTGACCATTACCCGCGCGCTACGCAGCATA
TCCACCACATTGAACACTTTATCAACGGCTTAAAAACACGCGGATATGCC
TACGAAAAGCAGGGATCAACTTACTTTAGTGTTTCAAGCTTTGAGCAATA
CGGCCGCCTCGCCCAACTCGACAAAAGGGAATGCGGGAGCGCAAGCGCTT
CGGATAGCGACGAGTACGACAAAGACGATGTGCGAGACTTTGCTTTATGG
AAATCACACAAAGGAGAAGATGGGAACGTGTTTTGGGACAACTCTCTTGG
AAAGGGGCGCCCCGGATGGCATATCGAGTGTTCATGTATGGCGATGCAGT
ATCTCGGACCTCAGCTTGACATTCACGCCGGAGGAATAGACCTGGTCTTC
CCACATCACGAAAACGAAATAGCGCAGTCTGAGGCACTAACAGGCAAACT
GTTTGCATCATTCTGGCTGCATAACGGCTTCGTCAACATTGACAACGAAA
AGATGTCAAAGAGCCTCGGAAACTTTCGCACGCTACGAGACATTGTCGAC
AAACCCGATGACGCGCGTGCTTTCCGGTATCTCGTGGTGGCATCGCAATA
CCGTTCGGCGTTGGCCTTCACGGATAAGAGCCTCAAGTCATCGCGGAATA
CAATAAAGCGGCTGGACGCGTTGCGAACACGGCTTCAGGACACCGTTGGC
GTGGGCGGCGAGGAAGAGATACAAAGGGTCGTAACTGACGCATCGCAGAA
TTTTATCAACGCAATGGACGATGACCTTAACACACCCCGAGCCGCGGCGG
CTATGTTCTCCGTAGTCAACGCGGCAGAGAAAATGCTGAAAGCCGACAAG
TTGGGAACGAACGCGTCCAAACTAGTTCTCGATTGCCTCGCGGATATGGA
CAGAGTATTTGGCATATTCTACAAACCAGAGATCAGCGTCGAAGATAGCA
GTTCGAGCGAGGAGGATAGCAATGCACCAGAAGAACTTGTTCTGTTGTTA
GAGCAGAGAGCGCAGGCTCGAAAGGCGAAAGACTTTGCACGTGCAGATCA
AATACGGGACGTTATTACAGCGGCCGGGTTCTGCATTATGGACACGCCGC
AAGGTGCTAAGCTGCAACGCATAGAAAGCTAG

Coding sequence (CDS) from alignment at tig00000073_pilon:403150..404781+

>Ggra7904.t1 ID=Ggra7904.t1|Name=Ggra7904.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1632bp|location=Sequence derived from alignment at tig00000073_pilon:403150..404781+ (Gracilaria gracilis GNS1m male)
ATGTCAGAGAGTATCGCTTTCACATCTGCAGCGCCACTCCAGCGCACCTC
TCTCCTCTCAGTGCCACTCATCGAACCACACTCCTTTTGTCGACAACAAG
CCTGGTCAGCCCGTGCATCTGTTCGCGCACATCTGTCCGTGCCCCCAGCG
ACAAGCAATGTAGATGCCTCCTCCATCGAAAATGCACTCCAACAGCACGG
TCTCAAATTCTTTAACTCCATGACCAGACAGAAGGAGACATTTCGAACCA
TCGAGCCAGGAATTGTGCGCTTCTACTCGTGTGGTCCAACCGTGTACGAC
TTTGCGCACATTGGCAATTTCAGAGCATTTCTTACGTACGACGTTATCAA
GCGATGGCTCATATACAAAGGATACCATGTGCGTCACGTCATGAATCTCA
CAGACGTGGATGACAAGATCATCGCACGCATCCAGCGTGAGCAGTGTTCC
GCCGCTCAACTCACAAACAGATATGCAGATGCGTTTTTCGACGATCTCAG
CCTTCTCAACGTCATTCCAGCTGACCATTACCCGCGCGCTACGCAGCATA
TCCACCACATTGAACACTTTATCAACGGCTTAAAAACACGCGGATATGCC
TACGAAAAGCAGGGATCAACTTACTTTAGTGTTTCAAGCTTTGAGCAATA
CGGCCGCCTCGCCCAACTCGACAAAAGGGAATGCGGGAGCGCAAGCGCTT
CGGATAGCGACGAGTACGACAAAGACGATGTGCGAGACTTTGCTTTATGG
AAATCACACAAAGGAGAAGATGGGAACGTGTTTTGGGACAACTCTCTTGG
AAAGGGGCGCCCCGGATGGCATATCGAGTGTTCATGTATGGCGATGCAGT
ATCTCGGACCTCAGCTTGACATTCACGCCGGAGGAATAGACCTGGTCTTC
CCACATCACGAAAACGAAATAGCGCAGTCTGAGGCACTAACAGGCAAACT
GTTTGCATCATTCTGGCTGCATAACGGCTTCGTCAACATTGACAACGAAA
AGATGTCAAAGAGCCTCGGAAACTTTCGCACGCTACGAGACATTGTCGAC
AAACCCGATGACGCGCGTGCTTTCCGGTATCTCGTGGTGGCATCGCAATA
CCGTTCGGCGTTGGCCTTCACGGATAAGAGCCTCAAGTCATCGCGGAATA
CAATAAAGCGGCTGGACGCGTTGCGAACACGGCTTCAGGACACCGTTGGC
GTGGGCGGCGAGGAAGAGATACAAAGGGTCGTAACTGACGCATCGCAGAA
TTTTATCAACGCAATGGACGATGACCTTAACACACCCCGAGCCGCGGCGG
CTATGTTCTCCGTAGTCAACGCGGCAGAGAAAATGCTGAAAGCCGACAAG
TTGGGAACGAACGCGTCCAAACTAGTTCTCGATTGCCTCGCGGATATGGA
CAGAGTATTTGGCATATTCTACAAACCAGAGATCAGCGTCGAAGATAGCA
GTTCGAGCGAGGAGGATAGCAATGCACCAGAAGAACTTGTTCTGTTGTTA
GAGCAGAGAGCGCAGGCTCGAAAGGCGAAAGACTTTGCACGTGCAGATCA
AATACGGGACGTTATTACAGCGGCCGGGTTCTGCATTATGGACACGCCGC
AAGGTGCTAAGCTGCAACGCATAGAAAGCTAG