Ggra7902.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7902.t1
Unique Name	Ggra7902.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	767

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000073_pilon	contig	tig00000073_pilon:340984..343481 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	112098.XP_008621114.1
PFAMs	2OG-FeII_Oxy_3
Max annot lvl	2759\|Eukaryota
Evalue	5.82e-09
EggNOG OGs	2C14X@1\|root,2S2NY@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7902	Ggra7902	Gracilaria gracilis GNS1m male	gene	tig00000073_pilon 340984..343481 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7902.t1	Ggra7902.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000073_pilon 340984..343481 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7902.t1.start1	Ggra7902.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000073_pilon 340984..340986 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7902.t1.CDS1	Ggra7902.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000073_pilon 340984..341554 +
Ggra7902.t1.CDS2	Ggra7902.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000073_pilon 341660..342454 +
Ggra7902.t1.CDS3	Ggra7902.t1.CDS3	Gracilaria gracilis GNS1m male	CDS	tig00000073_pilon 342547..343481 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7902.t1.exon1	Ggra7902.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000073_pilon 340984..341554 +
Ggra7902.t1.exon2	Ggra7902.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000073_pilon 341660..342454 +
Ggra7902.t1.exon3	Ggra7902.t1.exon3	Gracilaria gracilis GNS1m male	exon	tig00000073_pilon 342547..343481 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7902.t1.intron1	Ggra7902.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000073_pilon 341555..341659 +
Ggra7902.t1.intron2	Ggra7902.t1.intron2	Gracilaria gracilis GNS1m male	intron	tig00000073_pilon 342455..342546 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7902.t1.stop1	Ggra7902.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000073_pilon 343479..343481 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000073_pilon:340984..343481+
coding sequence from alignment at tig00000073_pilon:340984..343481+

mRNA sequence

>Ggra7902.t1 ID=Ggra7902.t1|Name=Ggra7902.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=767bp
MAQQLRESIQKSLRLVSIFASAFIHGVVPNGIPPPILRVDGIGAITLPVP
STQAFSLAQASAVVKQGPQLERDHSGLYSGRIIDKSRFRTSPNWTSAIEK
LADETVAELGMSGRTMKFVTRELVILEPSAMFTSEMDADNFRGSFSILIV
SLPSPQGRAMLTSNHAGKEHQYDLGGYSTNGRYLVALGHDSLTQLLEVFH
LWERIPDQQRPSKVVLALNTRCKKENLSFANLEYDDAVFVRHLRNCNKFS
ILLVLLRANLSEKGRKKKMGTEEERFVTWNNCDEENESGGAVDLRRKNTC
EEELSVIKVVDDSDNVVNHFPVKVSHSKDVILNRSSRGEAQVRGTPQDEA
HTTINSRLSSALIFWPKNADFRMLCESNFLSALQFLRSAALVPGKFAIEA
LLLAIGFIAVTSGNMRRYLIHMLEFSCHLKNLECALEVLKQMSTQSKNDT
TSSPALIKIIESTSIENFSYGSEFLARTQRCGLNEEVLIAVTKTLMGLVQ
TEGSDRSLVSTAKFVFSFKLFHEQQRAFLENVKKLPIGSIFEAIQRIDAA
LEETGVSDRAMEGLTSLTKVYVPRAIDEYCHARKICGTRRLYPYLFFEED
SDEGEHLVKVLSIFIRWRHENEYPLSFLLEKSVSARSLRLLKVLAKCEQL
VSAVDDTNVRKLLEALMKNLDYPRPMQSNWQTKAYISGHEVVTKSLHGEL
LELTYRGFVGVREARDFVEGRFYGIYNEIEQHSVSAKVVGRGSKAAVILQ
KTNYYYLHQLKLYEED*

spliced messenger RNA

>Ggra7902.t1 ID=Ggra7902.t1|Name=Ggra7902.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2301bp|location=Sequence derived from alignment at tig00000073_pilon:340984..343481+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCAGCAGCTTCGTGAGTCGATTCAGAAAAGTTTGCGTCTTGTTTC
TATTTTTGCTTCAGCATTCATCCATGGTGTTGTTCCAAACGGAATTCCAC
CCCCTATCCTACGCGTGGATGGGATTGGAGCAATCACTTTGCCGGTGCCA
AGCACCCAAGCCTTCAGCCTGGCTCAAGCTAGTGCTGTGGTCAAGCAAGG
TCCGCAACTCGAGCGAGACCACTCTGGACTCTATTCTGGTCGTATAATTG
ACAAATCACGTTTCCGTACCAGTCCAAATTGGACAAGTGCAATTGAAAAG
CTTGCAGATGAGACCGTTGCAGAATTGGGAATGAGCGGAAGGACGATGAA
GTTTGTGACACGGGAACTCGTGATTCTTGAACCCAGTGCTATGTTTACAT
CTGAAATGGATGCAGATAATTTTCGTGGTTCTTTTTCAATCCTCATCGTG
AGCTTGCCATCGCCCCAAGGCCGGGCGATGTTAACTAGCAACCATGCTGG
TAAAGAACACCAATACGACCTCGGTGGGTACTCGACTAATGGACGTTACT
TGGTGGCTTTAGGGCATGACTCGTTAACGCAGCTTCTGGAAGTTTTTCAT
CTATGGGAGAGGATCCCGGACCAGCAAAGACCATCGAAAGTAGTCCTAGC
ATTGAACACGCGATGCAAAAAAGAAAATCTCTCGTTCGCTAACCTAGAGT
ACGATGATGCGGTTTTTGTTCGTCATCTGCGAAATTGTAACAAGTTTTCG
ATCCTGCTCGTACTATTGCGCGCGAATCTATCGGAGAAGGGCAGAAAGAA
AAAGATGGGCACAGAAGAAGAACGCTTCGTGACGTGGAATAACTGCGACG
AAGAAAATGAGAGCGGGGGTGCTGTGGATCTGAGAAGAAAGAATACGTGC
GAAGAAGAACTCTCGGTCATAAAGGTTGTCGACGATTCCGATAACGTGGT
GAACCATTTTCCCGTGAAAGTGAGTCACTCGAAAGATGTTATTTTGAACC
GCAGCTCGAGAGGGGAAGCGCAAGTTCGTGGAACACCCCAGGACGAAGCT
CACACCACAATCAATTCACGTCTCTCATCTGCCCTCATTTTTTGGCCGAA
AAATGCCGACTTTCGCATGTTGTGCGAATCGAACTTCTTATCGGCACTAC
AATTCCTTCGATCTGCTGCGTTAGTTCCGGGCAAATTCGCGATTGAGGCA
TTGCTTTTGGCGATCGGATTTATTGCTGTTACGTCTGGAAACATGAGGAG
ATACTTGATCCATATGCTGGAATTTTCATGTCATTTGAAGAATTTGGAAT
GTGCTTTAGAGGTATTGAAACAAATGTCTACTCAATCAAAGAACGATACA
ACTAGTTCACCTGCGCTTATCAAAATAATCGAATCTACTTCCATCGAGAA
CTTCTCATACGGTTCTGAGTTTCTAGCGAGAACTCAGAGATGTGGCCTAA
ACGAGGAAGTTTTGATCGCCGTTACAAAAACCTTGATGGGTTTAGTTCAG
ACTGAGGGCTCTGATAGAAGCTTAGTGTCAACGGCAAAGTTTGTCTTCTC
TTTCAAATTGTTCCACGAACAGCAGAGAGCGTTTCTGGAAAACGTCAAAA
AGCTTCCGATTGGCTCCATTTTCGAAGCGATTCAAAGGATCGATGCAGCA
TTGGAAGAAACAGGGGTAAGTGATCGTGCAATGGAGGGACTAACATCGCT
CACCAAAGTCTATGTACCCAGAGCTATCGACGAGTATTGTCACGCAAGGA
AGATATGTGGTACCCGAAGGCTTTATCCGTATTTGTTCTTTGAAGAAGAC
TCTGACGAAGGCGAGCATTTGGTGAAAGTCCTTTCAATTTTTATTCGTTG
GCGTCATGAAAATGAATATCCCCTCTCTTTTCTGTTGGAGAAGAGTGTTT
CTGCGAGAAGCCTTCGGCTCCTCAAAGTTTTGGCAAAATGTGAGCAGTTG
GTCTCAGCAGTGGATGATACGAATGTGAGGAAGCTCTTAGAGGCTCTGAT
GAAAAATCTTGACTACCCCAGACCAATGCAGAGCAATTGGCAAACTAAAG
CGTACATTAGTGGTCACGAAGTAGTAACAAAATCTCTGCATGGGGAACTG
TTGGAGCTCACCTACAGAGGCTTTGTAGGGGTCAGGGAGGCCCGGGATTT
TGTCGAAGGAAGGTTCTACGGGATTTATAACGAAATCGAGCAACACAGTG
TGTCTGCAAAGGTTGTTGGGCGGGGTTCCAAAGCAGCCGTGATCCTGCAG
AAAACAAATTATTACTATCTACATCAACTCAAGCTGTATGAAGAAGACTA
G

protein sequence of Ggra7902.t1

>Ggra7902.t1 ID=Ggra7902.t1|Name=Ggra7902.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=767bp
MAQQLRESIQKSLRLVSIFASAFIHGVVPNGIPPPILRVDGIGAITLPVP
STQAFSLAQASAVVKQGPQLERDHSGLYSGRIIDKSRFRTSPNWTSAIEK
LADETVAELGMSGRTMKFVTRELVILEPSAMFTSEMDADNFRGSFSILIV
SLPSPQGRAMLTSNHAGKEHQYDLGGYSTNGRYLVALGHDSLTQLLEVFH
LWERIPDQQRPSKVVLALNTRCKKENLSFANLEYDDAVFVRHLRNCNKFS
ILLVLLRANLSEKGRKKKMGTEEERFVTWNNCDEENESGGAVDLRRKNTC
EEELSVIKVVDDSDNVVNHFPVKVSHSKDVILNRSSRGEAQVRGTPQDEA
HTTINSRLSSALIFWPKNADFRMLCESNFLSALQFLRSAALVPGKFAIEA
LLLAIGFIAVTSGNMRRYLIHMLEFSCHLKNLECALEVLKQMSTQSKNDT
TSSPALIKIIESTSIENFSYGSEFLARTQRCGLNEEVLIAVTKTLMGLVQ
TEGSDRSLVSTAKFVFSFKLFHEQQRAFLENVKKLPIGSIFEAIQRIDAA
LEETGVSDRAMEGLTSLTKVYVPRAIDEYCHARKICGTRRLYPYLFFEED
SDEGEHLVKVLSIFIRWRHENEYPLSFLLEKSVSARSLRLLKVLAKCEQL
VSAVDDTNVRKLLEALMKNLDYPRPMQSNWQTKAYISGHEVVTKSLHGEL
LELTYRGFVGVREARDFVEGRFYGIYNEIEQHSVSAKVVGRGSKAAVILQ
KTNYYYLHQLKLYEED*

mRNA from alignment at tig00000073_pilon:340984..343481+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7902.t1 ID=Ggra7902.t1|Name=Ggra7902.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2498bp|location=Sequence derived from alignment at tig00000073_pilon:340984..343481+ (Gracilaria gracilis GNS1m male)
ATGGCCCAGCAGCTTCGTGAGTCGATTCAGAAAAGTTTGCGTCTTGTTTC
TATTTTTGCTTCAGCATTCATCCATGGTGTTGTTCCAAACGGAATTCCAC
CCCCTATCCTACGCGTGGATGGGATTGGAGCAATCACTTTGCCGGTGCCA
AGCACCCAAGCCTTCAGCCTGGCTCAAGCTAGTGCTGTGGTCAAGCAAGG
TCCGCAACTCGAGCGAGACCACTCTGGACTCTATTCTGGTCGTATAATTG
ACAAATCACGTTTCCGTACCAGTCCAAATTGGACAAGTGCAATTGAAAAG
CTTGCAGATGAGACCGTTGCAGAATTGGGAATGAGCGGAAGGACGATGAA
GTTTGTGACACGGGAACTCGTGATTCTTGAACCCAGTGCTATGTTTACAT
CTGAAATGGATGCAGATAATTTTCGTGGTTCTTTTTCAATCCTCATCGTG
AGCTTGCCATCGCCCCAAGGCCGGGCGATGTTAACTAGCAACCATGCTGG
TAAAGAACACCAATACGACCTCGGTGGGTACTCGACTAATGGACGTTACT
TGGTGGCTTTAGGGCATGACTGTGGGTACAGAATTGAAGCACTGGATGAA
GGCATGCGCCTCTTCATTGTTTACAACATAGAGTAGCAAGACCGCATTTC
GCAAGCATTTTCGTATCGTAAGTCAGCGTTAACGCAGCTTCTGGAAGTTT
TTCATCTATGGGAGAGGATCCCGGACCAGCAAAGACCATCGAAAGTAGTC
CTAGCATTGAACACGCGATGCAAAAAAGAAAATCTCTCGTTCGCTAACCT
AGAGTACGATGATGCGGTTTTTGTTCGTCATCTGCGAAATTGTAACAAGT
TTTCGATCCTGCTCGTACTATTGCGCGCGAATCTATCGGAGAAGGGCAGA
AAGAAAAAGATGGGCACAGAAGAAGAACGCTTCGTGACGTGGAATAACTG
CGACGAAGAAAATGAGAGCGGGGGTGCTGTGGATCTGAGAAGAAAGAATA
CGTGCGAAGAAGAACTCTCGGTCATAAAGGTTGTCGACGATTCCGATAAC
GTGGTGAACCATTTTCCCGTGAAAGTGAGTCACTCGAAAGATGTTATTTT
GAACCGCAGCTCGAGAGGGGAAGCGCAAGTTCGTGGAACACCCCAGGACG
AAGCTCACACCACAATCAATTCACGTCTCTCATCTGCCCTCATTTTTTGG
CCGAAAAATGCCGACTTTCGCATGTTGTGCGAATCGAACTTCTTATCGGC
ACTACAATTCCTTCGATCTGCTGCGTTAGTTCCGGGCAAATTCGCGATTG
AGGCATTGCTTTTGGCGATCGGATTTATTGCTGTTACGTCTGGAAACATG
AGGAGATACTTGATCCATATGCTGGAATTTTCATGTCATTTGAAGAATTT
GGAATGTGCTTTAGAGGTATTGAAACAAATGTCTACTCAATCAAAGAACG
ATACAACTAGTTCACCTGCGCGTATCAGCAATTTGGGATGTTCTTCGGAG
CGGCAAATATGTTCTTTCGGAAATGTGATTAATGCTTTCGGGTGGGAGGG
GTCGGTCCTGCAGTTATCAAAATAATCGAATCTACTTCCATCGAGAACTT
CTCATACGGTTCTGAGTTTCTAGCGAGAACTCAGAGATGTGGCCTAAACG
AGGAAGTTTTGATCGCCGTTACAAAAACCTTGATGGGTTTAGTTCAGACT
GAGGGCTCTGATAGAAGCTTAGTGTCAACGGCAAAGTTTGTCTTCTCTTT
CAAATTGTTCCACGAACAGCAGAGAGCGTTTCTGGAAAACGTCAAAAAGC
TTCCGATTGGCTCCATTTTCGAAGCGATTCAAAGGATCGATGCAGCATTG
GAAGAAACAGGGGTAAGTGATCGTGCAATGGAGGGACTAACATCGCTCAC
CAAAGTCTATGTACCCAGAGCTATCGACGAGTATTGTCACGCAAGGAAGA
TATGTGGTACCCGAAGGCTTTATCCGTATTTGTTCTTTGAAGAAGACTCT
GACGAAGGCGAGCATTTGGTGAAAGTCCTTTCAATTTTTATTCGTTGGCG
TCATGAAAATGAATATCCCCTCTCTTTTCTGTTGGAGAAGAGTGTTTCTG
CGAGAAGCCTTCGGCTCCTCAAAGTTTTGGCAAAATGTGAGCAGTTGGTC
TCAGCAGTGGATGATACGAATGTGAGGAAGCTCTTAGAGGCTCTGATGAA
AAATCTTGACTACCCCAGACCAATGCAGAGCAATTGGCAAACTAAAGCGT
ACATTAGTGGTCACGAAGTAGTAACAAAATCTCTGCATGGGGAACTGTTG
GAGCTCACCTACAGAGGCTTTGTAGGGGTCAGGGAGGCCCGGGATTTTGT
CGAAGGAAGGTTCTACGGGATTTATAACGAAATCGAGCAACACAGTGTGT
CTGCAAAGGTTGTTGGGCGGGGTTCCAAAGCAGCCGTGATCCTGCAGAAA
ACAAATTATTACTATCTACATCAACTCAAGCTGTATGAAGAAGACTAG

Coding sequence (CDS) from alignment at tig00000073_pilon:340984..343481+

>Ggra7902.t1 ID=Ggra7902.t1|Name=Ggra7902.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2301bp|location=Sequence derived from alignment at tig00000073_pilon:340984..343481+ (Gracilaria gracilis GNS1m male)
ATGGCCCAGCAGCTTCGTGAGTCGATTCAGAAAAGTTTGCGTCTTGTTTC
TATTTTTGCTTCAGCATTCATCCATGGTGTTGTTCCAAACGGAATTCCAC
CCCCTATCCTACGCGTGGATGGGATTGGAGCAATCACTTTGCCGGTGCCA
AGCACCCAAGCCTTCAGCCTGGCTCAAGCTAGTGCTGTGGTCAAGCAAGG
TCCGCAACTCGAGCGAGACCACTCTGGACTCTATTCTGGTCGTATAATTG
ACAAATCACGTTTCCGTACCAGTCCAAATTGGACAAGTGCAATTGAAAAG
CTTGCAGATGAGACCGTTGCAGAATTGGGAATGAGCGGAAGGACGATGAA
GTTTGTGACACGGGAACTCGTGATTCTTGAACCCAGTGCTATGTTTACAT
CTGAAATGGATGCAGATAATTTTCGTGGTTCTTTTTCAATCCTCATCGTG
AGCTTGCCATCGCCCCAAGGCCGGGCGATGTTAACTAGCAACCATGCTGG
TAAAGAACACCAATACGACCTCGGTGGGTACTCGACTAATGGACGTTACT
TGGTGGCTTTAGGGCATGACTCGTTAACGCAGCTTCTGGAAGTTTTTCAT
CTATGGGAGAGGATCCCGGACCAGCAAAGACCATCGAAAGTAGTCCTAGC
ATTGAACACGCGATGCAAAAAAGAAAATCTCTCGTTCGCTAACCTAGAGT
ACGATGATGCGGTTTTTGTTCGTCATCTGCGAAATTGTAACAAGTTTTCG
ATCCTGCTCGTACTATTGCGCGCGAATCTATCGGAGAAGGGCAGAAAGAA
AAAGATGGGCACAGAAGAAGAACGCTTCGTGACGTGGAATAACTGCGACG
AAGAAAATGAGAGCGGGGGTGCTGTGGATCTGAGAAGAAAGAATACGTGC
GAAGAAGAACTCTCGGTCATAAAGGTTGTCGACGATTCCGATAACGTGGT
GAACCATTTTCCCGTGAAAGTGAGTCACTCGAAAGATGTTATTTTGAACC
GCAGCTCGAGAGGGGAAGCGCAAGTTCGTGGAACACCCCAGGACGAAGCT
CACACCACAATCAATTCACGTCTCTCATCTGCCCTCATTTTTTGGCCGAA
AAATGCCGACTTTCGCATGTTGTGCGAATCGAACTTCTTATCGGCACTAC
AATTCCTTCGATCTGCTGCGTTAGTTCCGGGCAAATTCGCGATTGAGGCA
TTGCTTTTGGCGATCGGATTTATTGCTGTTACGTCTGGAAACATGAGGAG
ATACTTGATCCATATGCTGGAATTTTCATGTCATTTGAAGAATTTGGAAT
GTGCTTTAGAGGTATTGAAACAAATGTCTACTCAATCAAAGAACGATACA
ACTAGTTCACCTGCGCTTATCAAAATAATCGAATCTACTTCCATCGAGAA
CTTCTCATACGGTTCTGAGTTTCTAGCGAGAACTCAGAGATGTGGCCTAA
ACGAGGAAGTTTTGATCGCCGTTACAAAAACCTTGATGGGTTTAGTTCAG
ACTGAGGGCTCTGATAGAAGCTTAGTGTCAACGGCAAAGTTTGTCTTCTC
TTTCAAATTGTTCCACGAACAGCAGAGAGCGTTTCTGGAAAACGTCAAAA
AGCTTCCGATTGGCTCCATTTTCGAAGCGATTCAAAGGATCGATGCAGCA
TTGGAAGAAACAGGGGTAAGTGATCGTGCAATGGAGGGACTAACATCGCT
CACCAAAGTCTATGTACCCAGAGCTATCGACGAGTATTGTCACGCAAGGA
AGATATGTGGTACCCGAAGGCTTTATCCGTATTTGTTCTTTGAAGAAGAC
TCTGACGAAGGCGAGCATTTGGTGAAAGTCCTTTCAATTTTTATTCGTTG
GCGTCATGAAAATGAATATCCCCTCTCTTTTCTGTTGGAGAAGAGTGTTT
CTGCGAGAAGCCTTCGGCTCCTCAAAGTTTTGGCAAAATGTGAGCAGTTG
GTCTCAGCAGTGGATGATACGAATGTGAGGAAGCTCTTAGAGGCTCTGAT
GAAAAATCTTGACTACCCCAGACCAATGCAGAGCAATTGGCAAACTAAAG
CGTACATTAGTGGTCACGAAGTAGTAACAAAATCTCTGCATGGGGAACTG
TTGGAGCTCACCTACAGAGGCTTTGTAGGGGTCAGGGAGGCCCGGGATTT
TGTCGAAGGAAGGTTCTACGGGATTTATAACGAAATCGAGCAACACAGTG
TGTCTGCAAAGGTTGTTGGGCGGGGTTCCAAAGCAGCCGTGATCCTGCAG
AAAACAAATTATTACTATCTACATCAACTCAAGCTGTATGAAGAAGACTA
G