Ggra7894.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7894.t1
Unique NameGgra7894.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length249
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:264408..265154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX42097
Preferred nameLCYB
PFAMsLycopene_cycl
Max annot lvl2759|Eukaryota
KEGG rclassRC01004,RC01612,RC01964,RC02020,RC02021
KEGG koko:K06443,ko:K06444,ko:K14593
KEGG ReactionR03824,R04801,R05341,R06960,R06962,R06963,R07320,R07321,R07840,R07856
KEGG Pathwayko00906,ko01100,ko01110,map00906,map01100,map01110
KEGG ModuleM00097
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009507,GO:0009509,GO:0009536,GO:0009975,GO:0009987,GO:0016108,GO:0016109,GO:0016114,GO:0016116,GO:0016117,GO:0016853,GO:0016860,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0045436,GO:0046148,GO:0071704,GO:1901576
Evalue3.72e-76
EggNOG OGs2CN09@1|root,2QT2F@2759|Eukaryota
EC5.3.99.8,5.5.1.18,5.5.1.19
Descriptiontetraterpenoid biosynthetic process
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7894Ggra7894Gracilaria gracilis GNS1m malegenetig00000073_pilon 264408..265154 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7894.t1.stop1Ggra7894.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 264408..264410 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7894.t1.CDS1Ggra7894.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 264408..265154 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7894.t1.exon1Ggra7894.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 264408..265154 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7894.t1.start1Ggra7894.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 265152..265154 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7894.t1Ggra7894.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 264408..265154 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7894.t1 ID=Ggra7894.t1|Name=Ggra7894.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=249bp
MDYRDDHMRTAEDKRISLEQPTFLYVMPLDSGKGRLVFFEETSLVASPAM
DFDLLKDRLYKRLNYYGVQVEQVLDEEFCLIPMGGEKPDLDQRVIAFGGA
AAFVHPATGYMIARALKLANQTAQIIAQELERGGDPDDVSNRIWKSIWNE
GRNRQRDFFNFGGEYLQHIDLQETRDFFTAFFDLPTQQWADFLSFRLMKP
LERLIFGLGVFVRTSNRVRLSLMMDSMTKGRIPLLTSVLPLYEVDAED*
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spliced messenger RNA

>Ggra7894.t1 ID=Ggra7894.t1|Name=Ggra7894.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=747bp|location=Sequence derived from alignment at tig00000073_pilon:264408..265154- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTATCGCGATGATCACATGCGAACCGCAGAAGACAAGCGCATCAG
TCTCGAGCAGCCAACATTTCTGTACGTCATGCCCCTGGATAGCGGCAAAG
GGCGCCTTGTCTTCTTTGAGGAGACGTCATTGGTGGCCTCTCCAGCCATG
GATTTTGATCTTCTCAAGGACCGTCTGTACAAACGACTCAACTACTATGG
CGTACAAGTCGAACAAGTTCTCGACGAGGAATTTTGCCTGATTCCCATGG
GCGGTGAAAAGCCCGATCTTGATCAGAGAGTGATTGCATTTGGCGGCGCT
GCCGCATTTGTGCACCCAGCAACTGGTTACATGATCGCGCGTGCGCTCAA
ACTTGCCAATCAGACTGCTCAGATTATAGCGCAGGAACTGGAGAGGGGAG
GCGACCCGGATGACGTTTCCAATCGCATCTGGAAAAGCATCTGGAATGAA
GGTCGAAACCGCCAACGTGACTTCTTCAACTTTGGCGGTGAGTATCTGCA
GCATATAGACCTTCAAGAAACCCGAGATTTCTTCACGGCCTTCTTTGACC
TGCCTACCCAGCAGTGGGCAGACTTCCTGTCTTTCAGACTGATGAAACCA
TTGGAAAGGCTCATTTTCGGCCTCGGTGTGTTTGTAAGGACGTCTAATCG
TGTTCGCTTATCCTTGATGATGGACTCCATGACCAAAGGAAGAATTCCAC
TGCTCACATCTGTACTTCCCTTGTACGAAGTCGATGCCGAAGATTAG
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protein sequence of Ggra7894.t1

>Ggra7894.t1 ID=Ggra7894.t1|Name=Ggra7894.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=249bp
MDYRDDHMRTAEDKRISLEQPTFLYVMPLDSGKGRLVFFEETSLVASPAM
DFDLLKDRLYKRLNYYGVQVEQVLDEEFCLIPMGGEKPDLDQRVIAFGGA
AAFVHPATGYMIARALKLANQTAQIIAQELERGGDPDDVSNRIWKSIWNE
GRNRQRDFFNFGGEYLQHIDLQETRDFFTAFFDLPTQQWADFLSFRLMKP
LERLIFGLGVFVRTSNRVRLSLMMDSMTKGRIPLLTSVLPLYEVDAED*
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mRNA from alignment at tig00000073_pilon:264408..265154-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7894.t1 ID=Ggra7894.t1|Name=Ggra7894.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=747bp|location=Sequence derived from alignment at tig00000073_pilon:264408..265154- (Gracilaria gracilis GNS1m male)
ATGGACTATCGCGATGATCACATGCGAACCGCAGAAGACAAGCGCATCAG
TCTCGAGCAGCCAACATTTCTGTACGTCATGCCCCTGGATAGCGGCAAAG
GGCGCCTTGTCTTCTTTGAGGAGACGTCATTGGTGGCCTCTCCAGCCATG
GATTTTGATCTTCTCAAGGACCGTCTGTACAAACGACTCAACTACTATGG
CGTACAAGTCGAACAAGTTCTCGACGAGGAATTTTGCCTGATTCCCATGG
GCGGTGAAAAGCCCGATCTTGATCAGAGAGTGATTGCATTTGGCGGCGCT
GCCGCATTTGTGCACCCAGCAACTGGTTACATGATCGCGCGTGCGCTCAA
ACTTGCCAATCAGACTGCTCAGATTATAGCGCAGGAACTGGAGAGGGGAG
GCGACCCGGATGACGTTTCCAATCGCATCTGGAAAAGCATCTGGAATGAA
GGTCGAAACCGCCAACGTGACTTCTTCAACTTTGGCGGTGAGTATCTGCA
GCATATAGACCTTCAAGAAACCCGAGATTTCTTCACGGCCTTCTTTGACC
TGCCTACCCAGCAGTGGGCAGACTTCCTGTCTTTCAGACTGATGAAACCA
TTGGAAAGGCTCATTTTCGGCCTCGGTGTGTTTGTAAGGACGTCTAATCG
TGTTCGCTTATCCTTGATGATGGACTCCATGACCAAAGGAAGAATTCCAC
TGCTCACATCTGTACTTCCCTTGTACGAAGTCGATGCCGAAGATTAG
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Coding sequence (CDS) from alignment at tig00000073_pilon:264408..265154-

>Ggra7894.t1 ID=Ggra7894.t1|Name=Ggra7894.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=747bp|location=Sequence derived from alignment at tig00000073_pilon:264408..265154- (Gracilaria gracilis GNS1m male)
ATGGACTATCGCGATGATCACATGCGAACCGCAGAAGACAAGCGCATCAG
TCTCGAGCAGCCAACATTTCTGTACGTCATGCCCCTGGATAGCGGCAAAG
GGCGCCTTGTCTTCTTTGAGGAGACGTCATTGGTGGCCTCTCCAGCCATG
GATTTTGATCTTCTCAAGGACCGTCTGTACAAACGACTCAACTACTATGG
CGTACAAGTCGAACAAGTTCTCGACGAGGAATTTTGCCTGATTCCCATGG
GCGGTGAAAAGCCCGATCTTGATCAGAGAGTGATTGCATTTGGCGGCGCT
GCCGCATTTGTGCACCCAGCAACTGGTTACATGATCGCGCGTGCGCTCAA
ACTTGCCAATCAGACTGCTCAGATTATAGCGCAGGAACTGGAGAGGGGAG
GCGACCCGGATGACGTTTCCAATCGCATCTGGAAAAGCATCTGGAATGAA
GGTCGAAACCGCCAACGTGACTTCTTCAACTTTGGCGGTGAGTATCTGCA
GCATATAGACCTTCAAGAAACCCGAGATTTCTTCACGGCCTTCTTTGACC
TGCCTACCCAGCAGTGGGCAGACTTCCTGTCTTTCAGACTGATGAAACCA
TTGGAAAGGCTCATTTTCGGCCTCGGTGTGTTTGTAAGGACGTCTAATCG
TGTTCGCTTATCCTTGATGATGGACTCCATGACCAAAGGAAGAATTCCAC
TGCTCACATCTGTACTTCCCTTGTACGAAGTCGATGCCGAAGATTAG
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