Ggra7892.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7892.t1
Unique NameGgra7892.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length203
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:258989..260017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5762.XP_002676871.1
Preferred nameTMED2
PFAMsEMP24_GP25L
Max annot lvl2759|Eukaryota
KEGG koko:K20347
KEGG TC9.B.188.1.2
GOsGO:0000003,GO:0000139,GO:0000578,GO:0001568,GO:0001701,GO:0001756,GO:0001838,GO:0001841,GO:0001843,GO:0001890,GO:0001892,GO:0001893,GO:0001944,GO:0001947,GO:0002009,GO:0002790,GO:0003002,GO:0003006,GO:0003007,GO:0003143,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0006621,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007030,GO:0007154,GO:0007267,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007444,GO:0007507,GO:0007565,GO:0008104,GO:0008150,GO:0008565,GO:0008593,GO:0009306,GO:0009653,GO:0009790,GO:0009792,GO:0009798,GO:0009799,GO:0009855,GO:0009880,GO:0009887,GO:0009888,GO:0009893,GO:0009948,GO:0009952,GO:0009966,GO:0009987,GO:0010256,GO:0010468,GO:0010604,GO:0010628,GO:0010646,GO:0012505,GO:0012506,GO:0012507,GO:0014020,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016331,GO:0019222,GO:0021915,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023061,GO:0030133,GO:0030134,GO:0030135,GO:0030137,GO:0030141,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030667,GO:0031090,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032507,GO:0032525,GO:0032940,GO:0033036,GO:0033116,GO:0033365,GO:0034260,GO:0034613,GO:0034622,GO:0035050,GO:0035148,GO:0035220,GO:0035239,GO:0035264,GO:0035282,GO:0035295,GO:0035437,GO:0035459,GO:0035964,GO:0036342,GO:0040007,GO:0042175,GO:0042588,GO:0042589,GO:0042886,GO:0043009,GO:0043086,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044092,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0045184,GO:0045185,GO:0046662,GO:0046903,GO:0046907,GO:0048042,GO:0048193,GO:0048194,GO:0048199,GO:0048200,GO:0048205,GO:0048207,GO:0048208,GO:0048513,GO:0048518,GO:0048519,GO:0048562,GO:0048568,GO:0048583,GO:0048589,GO:0048598,GO:0048608,GO:0048609,GO:0048646,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050795,GO:0051179,GO:0051234,GO:0051235,GO:0051239,GO:0051336,GO:0051346,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051651,GO:0051656,GO:0051704,GO:0060135,GO:0060255,GO:0060429,GO:0060562,GO:0060606,GO:0060674,GO:0060711,GO:0060716,GO:0061024,GO:0061053,GO:0061355,GO:0061371,GO:0061458,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071840,GO:0072175,GO:0072358,GO:0072359,GO:0072595,GO:0072657,GO:0072659,GO:0090114,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0098827,GO:0099503,GO:0198738,GO:1990778,GO:2000241
Evalue3.43e-20
EggNOG OGsKOG1692@1|root,KOG1692@2759|Eukaryota
Descriptionprotein transport
COG categoryS
BRITEko00000,ko02000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7892Ggra7892Gracilaria gracilis GNS1m malegenetig00000073_pilon 258989..260017 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7892.t1Ggra7892.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 258989..260017 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7892.t1.start1Ggra7892.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 258989..258991 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7892.t1.CDS1Ggra7892.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 258989..259115 +
Ggra7892.t1.CDS2Ggra7892.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000073_pilon 259316..259564 +
Ggra7892.t1.CDS3Ggra7892.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000073_pilon 259693..259800 +
Ggra7892.t1.CDS4Ggra7892.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000073_pilon 259893..260017 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7892.t1.exon1Ggra7892.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 258989..259115 +
Ggra7892.t1.exon2Ggra7892.t1.exon2Gracilaria gracilis GNS1m maleexontig00000073_pilon 259316..259564 +
Ggra7892.t1.exon3Ggra7892.t1.exon3Gracilaria gracilis GNS1m maleexontig00000073_pilon 259693..259800 +
Ggra7892.t1.exon4Ggra7892.t1.exon4Gracilaria gracilis GNS1m maleexontig00000073_pilon 259893..260017 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7892.t1.intron1Ggra7892.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000073_pilon 259116..259315 +
Ggra7892.t1.intron2Ggra7892.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000073_pilon 259565..259692 +
Ggra7892.t1.intron3Ggra7892.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000073_pilon 259801..259892 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7892.t1.stop1Ggra7892.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 260015..260017 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7892.t1 ID=Ggra7892.t1|Name=Ggra7892.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=203bp
MKGSRLFSLILLTIVLCGRRTSALNFKISPKETLCFHEITHKGNKVLAFF
DVLSWGYGAYVYLHVNAPSGREIQKFEAQSEGRVEFIASEDGEHSFCFKN
AYSETEVSFWVNTETDSALSDVAREEHVNDMVYSVEKLNSLVSAARVDLE
AFKAREHHHRETADKNRRRVTFWAIIECLLILAVAGVQIMRIRNFFEYKR
IV*
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spliced messenger RNA

>Ggra7892.t1 ID=Ggra7892.t1|Name=Ggra7892.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=609bp|location=Sequence derived from alignment at tig00000073_pilon:258989..260017+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGGTTCACGTCTCTTCAGCTTGATCCTTTTGACGATTGTTCTTTG
TGGTCGACGCACCAGTGCCCTGAACTTCAAGATATCTCCAAAAGAAACAT
TATGTTTCCATGAAATCACTCATAAAGGCAATAAGGTTCTCGCGTTTTTT
GACGTTCTTTCATGGGGATATGGCGCTTATGTTTACCTACATGTAAATGC
TCCGAGTGGTCGTGAGATTCAGAAGTTTGAAGCTCAAAGTGAAGGGCGCG
TTGAGTTCATTGCGTCTGAAGATGGTGAGCACAGTTTCTGCTTCAAAAAT
GCGTATAGTGAGACGGAAGTGTCGTTTTGGGTGAACACCGAAACCGATTC
AGCCCTTTCTGACGTCGCCAGAGAAGAACACGTGAACGATATGGTGTACA
GCGTTGAGAAGCTGAATTCCCTTGTTAGCGCTGCGAGAGTAGACCTCGAA
GCCTTCAAAGCCAGAGAGCACCATCACCGAGAGACTGCGGATAAGAACAG
AAGAAGAGTTACCTTCTGGGCCATCATTGAATGTCTCCTCATACTCGCTG
TGGCTGGGGTCCAAATTATGCGTATTCGCAACTTCTTCGAATACAAACGC
ATAGTTTAG
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protein sequence of Ggra7892.t1

>Ggra7892.t1 ID=Ggra7892.t1|Name=Ggra7892.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=203bp
MKGSRLFSLILLTIVLCGRRTSALNFKISPKETLCFHEITHKGNKVLAFF
DVLSWGYGAYVYLHVNAPSGREIQKFEAQSEGRVEFIASEDGEHSFCFKN
AYSETEVSFWVNTETDSALSDVAREEHVNDMVYSVEKLNSLVSAARVDLE
AFKAREHHHRETADKNRRRVTFWAIIECLLILAVAGVQIMRIRNFFEYKR
IV*
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mRNA from alignment at tig00000073_pilon:258989..260017+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7892.t1 ID=Ggra7892.t1|Name=Ggra7892.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1029bp|location=Sequence derived from alignment at tig00000073_pilon:258989..260017+ (Gracilaria gracilis GNS1m male)
ATGAAAGGTTCACGTCTCTTCAGCTTGATCCTTTTGACGATTGTTCTTTG
TGGTCGACGCACCAGTGCCCTGAACTTCAAGATATCTCCAAAAGAAACAT
TATGTTTCCATGAAATCACTCATAAAGGTAAGGAAGAAACACATGTagcg
aaacgaagcgagaagattccaaggaaggaagcgaagAGGCTGAGGCGTTT
CGAATACTCCCATCATTCCTTCTTCCTCGATACGGATTGATGACCCGCAA
CCATTTCTTTGGAATTTGCGAACATAACATTCTCTGAGAGCTGATGCTAA
CCATTTACGGCGTGATAAATGTCGCAGGCAATAAGGTTCTCGCGTTTTTT
GACGTTCTTTCATGGGGATATGGCGCTTATGTTTACCTACATGTAAATGC
TCCGAGTGGTCGTGAGATTCAGAAGTTTGAAGCTCAAAGTGAAGGGCGCG
TTGAGTTCATTGCGTCTGAAGATGGTGAGCACAGTTTCTGCTTCAAAAAT
GCGTATAGTGAGACGGAAGTGTCGTTTTGGGTGAACACCGAAACCGATTC
AGCCCTTTCTGACGTCGCCAGAGAAGGTAAGTTTGCCCTTCTTCTTTTGT
ATTGTATATGCGATGGATGCATCCATTCTTTTCAGGGAGGGTCGCGAAGC
AAATGAAGCTAACCACGATCTGATCCATGTTTATCATCAACATCTTACCT
GCAGAACACGTGAACGATATGGTGTACAGCGTTGAGAAGCTGAATTCCCT
TGTTAGCGCTGCGAGAGTAGACCTCGAAGCCTTCAAAGCCAGAGAGCACC
ATCACCGAGAGAGTAAGTTTAGACTTGCACGTCCTATGCTTAGCTTTGCC
TCGTTGTATTGGGAATGCATACTAACGTTGAGCCTTAATTCTATGCATTG
ACAGCTGCGGATAAGAACAGAAGAAGAGTTACCTTCTGGGCCATCATTGA
ATGTCTCCTCATACTCGCTGTGGCTGGGGTCCAAATTATGCGTATTCGCA
ACTTCTTCGAATACAAACGCATAGTTTAG
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Coding sequence (CDS) from alignment at tig00000073_pilon:258989..260017+

>Ggra7892.t1 ID=Ggra7892.t1|Name=Ggra7892.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=609bp|location=Sequence derived from alignment at tig00000073_pilon:258989..260017+ (Gracilaria gracilis GNS1m male)
ATGAAAGGTTCACGTCTCTTCAGCTTGATCCTTTTGACGATTGTTCTTTG
TGGTCGACGCACCAGTGCCCTGAACTTCAAGATATCTCCAAAAGAAACAT
TATGTTTCCATGAAATCACTCATAAAGGCAATAAGGTTCTCGCGTTTTTT
GACGTTCTTTCATGGGGATATGGCGCTTATGTTTACCTACATGTAAATGC
TCCGAGTGGTCGTGAGATTCAGAAGTTTGAAGCTCAAAGTGAAGGGCGCG
TTGAGTTCATTGCGTCTGAAGATGGTGAGCACAGTTTCTGCTTCAAAAAT
GCGTATAGTGAGACGGAAGTGTCGTTTTGGGTGAACACCGAAACCGATTC
AGCCCTTTCTGACGTCGCCAGAGAAGAACACGTGAACGATATGGTGTACA
GCGTTGAGAAGCTGAATTCCCTTGTTAGCGCTGCGAGAGTAGACCTCGAA
GCCTTCAAAGCCAGAGAGCACCATCACCGAGAGACTGCGGATAAGAACAG
AAGAAGAGTTACCTTCTGGGCCATCATTGAATGTCTCCTCATACTCGCTG
TGGCTGGGGTCCAAATTATGCGTATTCGCAACTTCTTCGAATACAAACGC
ATAGTTTAG
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