Ggra789.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra789.t1
Unique NameGgra789.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length124
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000218_piloncontigtig00000218_pilon:58028..58527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra789Ggra789Gracilaria gracilis GNS1m malegenetig00000218_pilon 58028..58527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra789.t1Ggra789.t1Gracilaria gracilis GNS1m malepolypeptidetig00000218_pilon 58028..58527 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra789.t1.stop1Ggra789.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000218_pilon 58028..58030 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra789.t1.CDS1Ggra789.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000218_pilon 58028..58242 -
Ggra789.t1.CDS2Ggra789.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000218_pilon 58371..58527 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra789.t1.exon1Ggra789.t1.exon1Gracilaria gracilis GNS1m maleexontig00000218_pilon 58028..58242 -
Ggra789.t1.exon2Ggra789.t1.exon2Gracilaria gracilis GNS1m maleexontig00000218_pilon 58371..58527 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra789.t1.intron1Ggra789.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000218_pilon 58243..58370 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra789.t1.start1Ggra789.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000218_pilon 58525..58527 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra789.t1 ID=Ggra789.t1|Name=Ggra789.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=124bp
MIWCWCLVLDTPQMFTLAARVVANPLRAIRTVVREVDIGRLTLLHQILVE
ADGVCQRDVVLDCGPSDAMWADEAACQLRVDYEKRLVLHGQSPPQWLGAP
REVMEHMLKYVTRNFGGVATHLA*
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spliced messenger RNA

>Ggra789.t1 ID=Ggra789.t1|Name=Ggra789.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=372bp|location=Sequence derived from alignment at tig00000218_pilon:58028..58527- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTTGGTGTTGGTGTCTCGTGTTGGATACGCCGCAGATGTTCACGCT
GGCGGCGAGGGTGGTGGCCAACCCGCTGAGAGCGATACGCACCGTCGTCA
GAGAGGTGGATATAGGTAGACTCACCCTGCTCCACCAGATCCTTGTGGAA
GCCGATGGAGTGTGTCAACGTGATGTGGTGCTCGATTGTGGACCCAGTGA
CGCCATGTGGGCGGATGAAGCTGCGTGTCAACTGCGCGTTGATTACGAGA
AGCGCTTGGTGCTACACGGCCAGTCGCCACCTCAGTGGCTTGGCGCGCCA
CGAGAGGTGATGGAGCACATGCTCAAGTACGTTACGCGCAACTTTGGCGG
CGTCGCCACCCATTTGGCCTGA
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protein sequence of Ggra789.t1

>Ggra789.t1 ID=Ggra789.t1|Name=Ggra789.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=124bp
MIWCWCLVLDTPQMFTLAARVVANPLRAIRTVVREVDIGRLTLLHQILVE
ADGVCQRDVVLDCGPSDAMWADEAACQLRVDYEKRLVLHGQSPPQWLGAP
REVMEHMLKYVTRNFGGVATHLA*
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mRNA from alignment at tig00000218_pilon:58028..58527-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra789.t1 ID=Ggra789.t1|Name=Ggra789.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=500bp|location=Sequence derived from alignment at tig00000218_pilon:58028..58527- (Gracilaria gracilis GNS1m male)
ATGATTTGGTGTTGGTGTCTCGTGTTGGATACGCCGCAGATGTTCACGCT
GGCGGCGAGGGTGGTGGCCAACCCGCTGAGAGCGATACGCACCGTCGTCA
GAGAGGTGGATATAGGTAGACTCACCCTGCTCCACCAGATCCTTGTGGAA
GCCGATGGTGCCTAAATCGCGCGTGGCTTGCGTACTGTCACAAGCCCCGT
AGCAGACCATACCAACGGCCCATCTTCTGCAGCGCTGGCAAAAGTCGAAC
AGGCCTATTATCTGCCTTGTTGTTGTCGCTGTTAGGAGTGTGTCAACGTG
ATGTGGTGCTCGATTGTGGACCCAGTGACGCCATGTGGGCGGATGAAGCT
GCGTGTCAACTGCGCGTTGATTACGAGAAGCGCTTGGTGCTACACGGCCA
GTCGCCACCTCAGTGGCTTGGCGCGCCACGAGAGGTGATGGAGCACATGC
TCAAGTACGTTACGCGCAACTTTGGCGGCGTCGCCACCCATTTGGCCTGA
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Coding sequence (CDS) from alignment at tig00000218_pilon:58028..58527-

>Ggra789.t1 ID=Ggra789.t1|Name=Ggra789.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=372bp|location=Sequence derived from alignment at tig00000218_pilon:58028..58527- (Gracilaria gracilis GNS1m male)
ATGATTTGGTGTTGGTGTCTCGTGTTGGATACGCCGCAGATGTTCACGCT
GGCGGCGAGGGTGGTGGCCAACCCGCTGAGAGCGATACGCACCGTCGTCA
GAGAGGTGGATATAGGTAGACTCACCCTGCTCCACCAGATCCTTGTGGAA
GCCGATGGAGTGTGTCAACGTGATGTGGTGCTCGATTGTGGACCCAGTGA
CGCCATGTGGGCGGATGAAGCTGCGTGTCAACTGCGCGTTGATTACGAGA
AGCGCTTGGTGCTACACGGCCAGTCGCCACCTCAGTGGCTTGGCGCGCCA
CGAGAGGTGATGGAGCACATGCTCAAGTACGTTACGCGCAACTTTGGCGG
CGTCGCCACCCATTTGGCCTGA
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