Ggra7797.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7797.t1
Unique Name	Ggra7797.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	506

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000088_pilon	contig	tig00000088_pilon:616393..617910 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7797	Ggra7797	Gracilaria gracilis GNS1m male	gene	tig00000088_pilon 616393..617910 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7797.t1.start1	Ggra7797.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000088_pilon 616393..616395 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7797.t1.CDS1	Ggra7797.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000088_pilon 616393..617910 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7797.t1.exon1	Ggra7797.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000088_pilon 616393..617910 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7797.t1.stop1	Ggra7797.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000088_pilon 617908..617910 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7797.t1	Ggra7797.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000088_pilon 616393..617910 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000088_pilon:616393..617910+
coding sequence from alignment at tig00000088_pilon:616393..617910+

mRNA sequence

>Ggra7797.t1 ID=Ggra7797.t1|Name=Ggra7797.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=506bp
MIEGDAVLPEEIKTYLQDLRCAAHSQTVQASPKPYSLFLDEDWRKWKERL
QHIRQDVHESMLKYEFEKQAHALLDKIEAFHDDFSNQYFRSHATWIYYYE
SSWLNAIFKTGSGVGNAEGVLTKRLRRYSKTLADMFKALKEGITHGWELV
VAPLSHLDLLKWLEASKKTPSFVSYLLKAIIGVAAAPILMFINDPVLYRQ
GIHCLIGVSFLYIVSFLFKQILKLMAVLPSVLPWGNGQGRRMIRRAPVED
TMNFSEVGNNKTEGSQTLCSRGPKNDNMERIQLKPSSRPLEVETVRTRPK
ETPVERTPLFPLSRENLSSTSNESEVSFKMAKASKGITRKGIHVRSINDH
GPIPRAKVTDSIRVGGRRINMVYDTEDGGLVEDSGDEIVAVVSSSKENDV
NQTGKPVAKKHATQAGNRSDAEYSDMMRGRAVQRKARRRPEDSKRILVDA
SNASHTTEDTRVLRSRTNSITTKSTDGLSKRDAKEKSAIPRRRSARLSAV
HMNET*

spliced messenger RNA

>Ggra7797.t1 ID=Ggra7797.t1|Name=Ggra7797.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1518bp|location=Sequence derived from alignment at tig00000088_pilon:616393..617910+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGAAGGTGATGCTGTATTGCCGGAAGAAATTAAGACGTATCTTCA
AGATCTACGTTGCGCTGCACACAGTCAGACGGTTCAAGCTTCCCCAAAAC
CATATTCGTTATTCCTGGACGAAGACTGGAGAAAATGGAAGGAGAGATTG
CAACACATCAGACAAGACGTGCATGAGAGTATGCTGAAGTATGAGTTTGA
GAAGCAAGCTCATGCTTTGTTAGATAAAATCGAGGCTTTCCATGACGACT
TCAGTAATCAATACTTTCGTTCCCATGCTACTTGGATATACTACTATGAA
AGCTCTTGGTTAAACGCGATCTTTAAGACAGGCTCAGGAGTGGGGAACGC
GGAAGGCGTCTTAACGAAGAGGCTCCGAAGATATTCGAAGACGCTCGCAG
ACATGTTCAAGGCTTTGAAAGAAGGCATCACACATGGATGGGAGTTGGTT
GTCGCCCCACTTTCACACCTTGATTTGCTGAAATGGCTGGAGGCATCGAA
GAAAACTCCATCCTTCGTTTCGTACCTTCTAAAGGCAATTATCGGTGTTG
CCGCTGCGCCCATCCTCATGTTTATCAACGACCCAGTCCTCTACAGACAA
GGGATACATTGTCTGATAGGTGTCTCATTCCTCTACATCGTATCTTTTCT
ATTCAAACAAATCTTAAAACTGATGGCGGTGCTACCGTCGGTACTGCCGT
GGGGTAATGGCCAAGGGCGAAGGATGATTCGGAGAGCACCAGTTGAGGAT
ACCATGAATTTCTCGGAAGTTGGGAACAACAAGACTGAAGGTAGCCAGAC
TTTGTGCTCTAGAGGGCCCAAAAATGACAATATGGAGAGAATCCAATTGA
AACCTTCATCACGTCCATTAGAAGTCGAAACTGTCAGGACGAGGCCAAAG
GAAACGCCGGTTGAACGTACACCTCTATTTCCTTTGTCTCGAGAAAACCT
CTCTAGTACATCTAATGAATCAGAGGTATCTTTCAAAATGGCGAAAGCTT
CAAAAGGAATCACAAGAAAGGGAATCCACGTTCGTTCAATCAATGATCAT
GGTCCCATACCGCGGGCAAAAGTTACTGATTCGATTCGAGTTGGCGGGCG
GCGTATCAACATGGTTTATGACACAGAAGATGGCGGTCTCGTTGAGGATT
CTGGAGACGAAATAGTTGCTGTAGTGTCCTCATCAAAAGAGAATGATGTC
AACCAAACTGGGAAACCGGTGGCAAAGAAGCATGCGACGCAAGCTGGGAA
TCGAAGCGACGCAGAATATTCGGATATGATGCGAGGTAGGGCAGTTCAGA
GGAAAGCTAGACGGAGGCCAGAGGACTCAAAAAGAATCTTAGTCGACGCA
TCAAATGCATCTCACACAACTGAGGACACGAGAGTTTTGAGATCCAGAAC
CAATTCCATAACGACGAAGTCCACTGATGGACTCTCTAAACGAGATGCAA
AAGAAAAGTCTGCGATCCCGAGAAGGCGTTCTGCTAGACTATCAGCAGTG
CATATGAACGAAACCTAA

protein sequence of Ggra7797.t1

>Ggra7797.t1 ID=Ggra7797.t1|Name=Ggra7797.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=506bp
MIEGDAVLPEEIKTYLQDLRCAAHSQTVQASPKPYSLFLDEDWRKWKERL
QHIRQDVHESMLKYEFEKQAHALLDKIEAFHDDFSNQYFRSHATWIYYYE
SSWLNAIFKTGSGVGNAEGVLTKRLRRYSKTLADMFKALKEGITHGWELV
VAPLSHLDLLKWLEASKKTPSFVSYLLKAIIGVAAAPILMFINDPVLYRQ
GIHCLIGVSFLYIVSFLFKQILKLMAVLPSVLPWGNGQGRRMIRRAPVED
TMNFSEVGNNKTEGSQTLCSRGPKNDNMERIQLKPSSRPLEVETVRTRPK
ETPVERTPLFPLSRENLSSTSNESEVSFKMAKASKGITRKGIHVRSINDH
GPIPRAKVTDSIRVGGRRINMVYDTEDGGLVEDSGDEIVAVVSSSKENDV
NQTGKPVAKKHATQAGNRSDAEYSDMMRGRAVQRKARRRPEDSKRILVDA
SNASHTTEDTRVLRSRTNSITTKSTDGLSKRDAKEKSAIPRRRSARLSAV
HMNET*

mRNA from alignment at tig00000088_pilon:616393..617910+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7797.t1 ID=Ggra7797.t1|Name=Ggra7797.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1518bp|location=Sequence derived from alignment at tig00000088_pilon:616393..617910+ (Gracilaria gracilis GNS1m male)
ATGATCGAAGGTGATGCTGTATTGCCGGAAGAAATTAAGACGTATCTTCA
AGATCTACGTTGCGCTGCACACAGTCAGACGGTTCAAGCTTCCCCAAAAC
CATATTCGTTATTCCTGGACGAAGACTGGAGAAAATGGAAGGAGAGATTG
CAACACATCAGACAAGACGTGCATGAGAGTATGCTGAAGTATGAGTTTGA
GAAGCAAGCTCATGCTTTGTTAGATAAAATCGAGGCTTTCCATGACGACT
TCAGTAATCAATACTTTCGTTCCCATGCTACTTGGATATACTACTATGAA
AGCTCTTGGTTAAACGCGATCTTTAAGACAGGCTCAGGAGTGGGGAACGC
GGAAGGCGTCTTAACGAAGAGGCTCCGAAGATATTCGAAGACGCTCGCAG
ACATGTTCAAGGCTTTGAAAGAAGGCATCACACATGGATGGGAGTTGGTT
GTCGCCCCACTTTCACACCTTGATTTGCTGAAATGGCTGGAGGCATCGAA
GAAAACTCCATCCTTCGTTTCGTACCTTCTAAAGGCAATTATCGGTGTTG
CCGCTGCGCCCATCCTCATGTTTATCAACGACCCAGTCCTCTACAGACAA
GGGATACATTGTCTGATAGGTGTCTCATTCCTCTACATCGTATCTTTTCT
ATTCAAACAAATCTTAAAACTGATGGCGGTGCTACCGTCGGTACTGCCGT
GGGGTAATGGCCAAGGGCGAAGGATGATTCGGAGAGCACCAGTTGAGGAT
ACCATGAATTTCTCGGAAGTTGGGAACAACAAGACTGAAGGTAGCCAGAC
TTTGTGCTCTAGAGGGCCCAAAAATGACAATATGGAGAGAATCCAATTGA
AACCTTCATCACGTCCATTAGAAGTCGAAACTGTCAGGACGAGGCCAAAG
GAAACGCCGGTTGAACGTACACCTCTATTTCCTTTGTCTCGAGAAAACCT
CTCTAGTACATCTAATGAATCAGAGGTATCTTTCAAAATGGCGAAAGCTT
CAAAAGGAATCACAAGAAAGGGAATCCACGTTCGTTCAATCAATGATCAT
GGTCCCATACCGCGGGCAAAAGTTACTGATTCGATTCGAGTTGGCGGGCG
GCGTATCAACATGGTTTATGACACAGAAGATGGCGGTCTCGTTGAGGATT
CTGGAGACGAAATAGTTGCTGTAGTGTCCTCATCAAAAGAGAATGATGTC
AACCAAACTGGGAAACCGGTGGCAAAGAAGCATGCGACGCAAGCTGGGAA
TCGAAGCGACGCAGAATATTCGGATATGATGCGAGGTAGGGCAGTTCAGA
GGAAAGCTAGACGGAGGCCAGAGGACTCAAAAAGAATCTTAGTCGACGCA
TCAAATGCATCTCACACAACTGAGGACACGAGAGTTTTGAGATCCAGAAC
CAATTCCATAACGACGAAGTCCACTGATGGACTCTCTAAACGAGATGCAA
AAGAAAAGTCTGCGATCCCGAGAAGGCGTTCTGCTAGACTATCAGCAGTG
CATATGAACGAAACCTAA

Coding sequence (CDS) from alignment at tig00000088_pilon:616393..617910+

>Ggra7797.t1 ID=Ggra7797.t1|Name=Ggra7797.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1518bp|location=Sequence derived from alignment at tig00000088_pilon:616393..617910+ (Gracilaria gracilis GNS1m male)
ATGATCGAAGGTGATGCTGTATTGCCGGAAGAAATTAAGACGTATCTTCA
AGATCTACGTTGCGCTGCACACAGTCAGACGGTTCAAGCTTCCCCAAAAC
CATATTCGTTATTCCTGGACGAAGACTGGAGAAAATGGAAGGAGAGATTG
CAACACATCAGACAAGACGTGCATGAGAGTATGCTGAAGTATGAGTTTGA
GAAGCAAGCTCATGCTTTGTTAGATAAAATCGAGGCTTTCCATGACGACT
TCAGTAATCAATACTTTCGTTCCCATGCTACTTGGATATACTACTATGAA
AGCTCTTGGTTAAACGCGATCTTTAAGACAGGCTCAGGAGTGGGGAACGC
GGAAGGCGTCTTAACGAAGAGGCTCCGAAGATATTCGAAGACGCTCGCAG
ACATGTTCAAGGCTTTGAAAGAAGGCATCACACATGGATGGGAGTTGGTT
GTCGCCCCACTTTCACACCTTGATTTGCTGAAATGGCTGGAGGCATCGAA
GAAAACTCCATCCTTCGTTTCGTACCTTCTAAAGGCAATTATCGGTGTTG
CCGCTGCGCCCATCCTCATGTTTATCAACGACCCAGTCCTCTACAGACAA
GGGATACATTGTCTGATAGGTGTCTCATTCCTCTACATCGTATCTTTTCT
ATTCAAACAAATCTTAAAACTGATGGCGGTGCTACCGTCGGTACTGCCGT
GGGGTAATGGCCAAGGGCGAAGGATGATTCGGAGAGCACCAGTTGAGGAT
ACCATGAATTTCTCGGAAGTTGGGAACAACAAGACTGAAGGTAGCCAGAC
TTTGTGCTCTAGAGGGCCCAAAAATGACAATATGGAGAGAATCCAATTGA
AACCTTCATCACGTCCATTAGAAGTCGAAACTGTCAGGACGAGGCCAAAG
GAAACGCCGGTTGAACGTACACCTCTATTTCCTTTGTCTCGAGAAAACCT
CTCTAGTACATCTAATGAATCAGAGGTATCTTTCAAAATGGCGAAAGCTT
CAAAAGGAATCACAAGAAAGGGAATCCACGTTCGTTCAATCAATGATCAT
GGTCCCATACCGCGGGCAAAAGTTACTGATTCGATTCGAGTTGGCGGGCG
GCGTATCAACATGGTTTATGACACAGAAGATGGCGGTCTCGTTGAGGATT
CTGGAGACGAAATAGTTGCTGTAGTGTCCTCATCAAAAGAGAATGATGTC
AACCAAACTGGGAAACCGGTGGCAAAGAAGCATGCGACGCAAGCTGGGAA
TCGAAGCGACGCAGAATATTCGGATATGATGCGAGGTAGGGCAGTTCAGA
GGAAAGCTAGACGGAGGCCAGAGGACTCAAAAAGAATCTTAGTCGACGCA
TCAAATGCATCTCACACAACTGAGGACACGAGAGTTTTGAGATCCAGAAC
CAATTCCATAACGACGAAGTCCACTGATGGACTCTCTAAACGAGATGCAA
AAGAAAAGTCTGCGATCCCGAGAAGGCGTTCTGCTAGACTATCAGCAGTG
CATATGAACGAAACCTAA