Ggra7744.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7744.t1
Unique NameGgra7744.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length216
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:315257..316034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4558.Sb07g025510.1
PFAMsFKBP_C
Max annot lvl35493|Streptophyta
KEGG koko:K01802
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009532,GO:0009534,GO:0009536,GO:0009543,GO:0009570,GO:0009579,GO:0031976,GO:0031977,GO:0031978,GO:0031984,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464
Evalue4.27e-10
EggNOG OGsCOG0545@1|root,KOG0552@2759|Eukaryota,37T0E@33090|Viridiplantae,3G7HW@35493|Streptophyta,3KWI0@4447|Liliopsida,3I4SX@38820|Poales
EC5.2.1.8
DescriptionPeptidyl-prolyl cis-trans isomerase
COG categoryO
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7744Ggra7744Gracilaria gracilis GNS1m malegenetig00000088_pilon 315257..316034 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7744.t1Ggra7744.t1Gracilaria gracilis GNS1m malepolypeptidetig00000088_pilon 315257..316034 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7744.t1.stop1Ggra7744.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000088_pilon 315257..315259 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7744.t1.CDS1Ggra7744.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000088_pilon 315257..315365 -
Ggra7744.t1.CDS2Ggra7744.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000088_pilon 315496..316034 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7744.t1.exon1Ggra7744.t1.exon1Gracilaria gracilis GNS1m maleexontig00000088_pilon 315257..315365 -
Ggra7744.t1.exon2Ggra7744.t1.exon2Gracilaria gracilis GNS1m maleexontig00000088_pilon 315496..316034 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7744.t1.intron1Ggra7744.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000088_pilon 315366..315495 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7744.t1.start1Ggra7744.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000088_pilon 316032..316034 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7744.t1 ID=Ggra7744.t1|Name=Ggra7744.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=216bp
MAFSSSVPVGQVSRLSRNHPRNGLSSLRMKLEPVADAKLSRRAFVAVFAS
LPIAYISKSAHGVPDYDAIRTRRYVDLGRPPADRRPPTFVENVPVYPIDQ
LKVQDIVVGDGDTVKNGSLVVARWVTVLDNGSTLDDSNENRPALFRPGAH
QVPPGIEDAVVGMRVGGVRRVYGTAERILTNIMLGYDIGERSPVPNQSNI
YIDLFVDRVDPYGTR*
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spliced messenger RNA

>Ggra7744.t1 ID=Ggra7744.t1|Name=Ggra7744.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=648bp|location=Sequence derived from alignment at tig00000088_pilon:315257..316034- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTCAGCAGTTCTGTTCCCGTCGGACAAGTATCACGCCTGTCTCG
AAACCATCCTCGCAATGGCCTGAGTTCACTCCGTATGAAACTCGAGCCAG
TGGCCGATGCAAAACTCTCACGCCGTGCTTTCGTTGCGGTCTTTGCCTCT
TTGCCGATTGCATACATTTCCAAATCTGCCCATGGCGTCCCAGATTATGA
CGCTATCCGGACACGTCGTTACGTCGACCTTGGCCGTCCCCCAGCGGACC
GGAGACCTCCCACGTTTGTTGAAAACGTCCCAGTGTATCCCATTGATCAG
TTAAAGGTTCAAGACATTGTCGTGGGAGACGGAGACACAGTTAAGAACGG
ATCCCTGGTCGTGGCGAGGTGGGTAACTGTTCTAGACAACGGCTCCACCC
TCGATGATTCCAATGAGAACAGACCAGCTTTGTTTCGGCCAGGAGCTCAT
CAGGTGCCGCCTGGTATAGAGGACGCTGTGGTTGGTATGCGCGTTGGTGG
TGTGCGTCGTGTCTACGGTACAGCTGAAAGAATTTTAACAAACATTATGT
TGGGATATGATATCGGTGAACGTAGTCCGGTACCTAATCAATCTAATATC
TATATCGATCTTTTTGTAGATCGAGTGGATCCGTATGGCACACGATGA
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protein sequence of Ggra7744.t1

>Ggra7744.t1 ID=Ggra7744.t1|Name=Ggra7744.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=216bp
MAFSSSVPVGQVSRLSRNHPRNGLSSLRMKLEPVADAKLSRRAFVAVFAS
LPIAYISKSAHGVPDYDAIRTRRYVDLGRPPADRRPPTFVENVPVYPIDQ
LKVQDIVVGDGDTVKNGSLVVARWVTVLDNGSTLDDSNENRPALFRPGAH
QVPPGIEDAVVGMRVGGVRRVYGTAERILTNIMLGYDIGERSPVPNQSNI
YIDLFVDRVDPYGTR*
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mRNA from alignment at tig00000088_pilon:315257..316034-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7744.t1 ID=Ggra7744.t1|Name=Ggra7744.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=778bp|location=Sequence derived from alignment at tig00000088_pilon:315257..316034- (Gracilaria gracilis GNS1m male)
ATGGCCTTCAGCAGTTCTGTTCCCGTCGGACAAGTATCACGCCTGTCTCG
AAACCATCCTCGCAATGGCCTGAGTTCACTCCGTATGAAACTCGAGCCAG
TGGCCGATGCAAAACTCTCACGCCGTGCTTTCGTTGCGGTCTTTGCCTCT
TTGCCGATTGCATACATTTCCAAATCTGCCCATGGCGTCCCAGATTATGA
CGCTATCCGGACACGTCGTTACGTCGACCTTGGCCGTCCCCCAGCGGACC
GGAGACCTCCCACGTTTGTTGAAAACGTCCCAGTGTATCCCATTGATCAG
TTAAAGGTTCAAGACATTGTCGTGGGAGACGGAGACACAGTTAAGAACGG
ATCCCTGGTCGTGGCGAGGTGGGTAACTGTTCTAGACAACGGCTCCACCC
TCGATGATTCCAATGAGAACAGACCAGCTTTGTTTCGGCCAGGAGCTCAT
CAGGTGCCGCCTGGTATAGAGGACGCTGTGGTTGGTATGCGCGTTGGTGG
TGTGCGTCGTGTCTACGGTACAGCTGAAAGAATTTTAACGTAAGTTACTT
CACTCAGTTCAGAAAGGTCATCACTGTATGATTTATATGCTAATACCTCG
GCTCCAATTCTAATATATGGTATACCAATTCGGAATTCGCAATTTTGTTA
CGGTGGTTGTGACAAACAGAAACATTATGTTGGGATATGATATCGGTGAA
CGTAGTCCGGTACCTAATCAATCTAATATCTATATCGATCTTTTTGTAGA
TCGAGTGGATCCGTATGGCACACGATGA
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Coding sequence (CDS) from alignment at tig00000088_pilon:315257..316034-

>Ggra7744.t1 ID=Ggra7744.t1|Name=Ggra7744.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=648bp|location=Sequence derived from alignment at tig00000088_pilon:315257..316034- (Gracilaria gracilis GNS1m male)
ATGGCCTTCAGCAGTTCTGTTCCCGTCGGACAAGTATCACGCCTGTCTCG
AAACCATCCTCGCAATGGCCTGAGTTCACTCCGTATGAAACTCGAGCCAG
TGGCCGATGCAAAACTCTCACGCCGTGCTTTCGTTGCGGTCTTTGCCTCT
TTGCCGATTGCATACATTTCCAAATCTGCCCATGGCGTCCCAGATTATGA
CGCTATCCGGACACGTCGTTACGTCGACCTTGGCCGTCCCCCAGCGGACC
GGAGACCTCCCACGTTTGTTGAAAACGTCCCAGTGTATCCCATTGATCAG
TTAAAGGTTCAAGACATTGTCGTGGGAGACGGAGACACAGTTAAGAACGG
ATCCCTGGTCGTGGCGAGGTGGGTAACTGTTCTAGACAACGGCTCCACCC
TCGATGATTCCAATGAGAACAGACCAGCTTTGTTTCGGCCAGGAGCTCAT
CAGGTGCCGCCTGGTATAGAGGACGCTGTGGTTGGTATGCGCGTTGGTGG
TGTGCGTCGTGTCTACGGTACAGCTGAAAGAATTTTAACAAACATTATGT
TGGGATATGATATCGGTGAACGTAGTCCGGTACCTAATCAATCTAATATC
TATATCGATCTTTTTGTAGATCGAGTGGATCCGTATGGCACACGATGA
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