Ggra7728.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7728.t1
Unique NameGgra7728.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length205
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:170065..170748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7728Ggra7728Gracilaria gracilis GNS1m malegenetig00000088_pilon 170065..170748 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7728.t1Ggra7728.t1Gracilaria gracilis GNS1m malepolypeptidetig00000088_pilon 170065..170748 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7728.t1.start1Ggra7728.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000088_pilon 170065..170067 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7728.t1.CDS1Ggra7728.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000088_pilon 170065..170538 +
Ggra7728.t1.CDS2Ggra7728.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000088_pilon 170608..170748 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7728.t1.exon1Ggra7728.t1.exon1Gracilaria gracilis GNS1m maleexontig00000088_pilon 170065..170538 +
Ggra7728.t1.exon2Ggra7728.t1.exon2Gracilaria gracilis GNS1m maleexontig00000088_pilon 170608..170748 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7728.t1.intron1Ggra7728.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000088_pilon 170539..170607 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7728.t1.stop1Ggra7728.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000088_pilon 170746..170748 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7728.t1 ID=Ggra7728.t1|Name=Ggra7728.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=205bp
MVFFPSEFIPEYRPAKKHSVFSSNGWWLNRWPILGWLEAFIKVAAWIAVP
HVRTHIPEQIPTLSPSAAVQLAVMLVASILLLFAVIDRLVYREIISMIFV
FPNNWAHWTVTLALYQCGREGINSKYFRIFCWLMFAGDVVKLVFFAFHDF
SRIGVGLYVLVFLTALFAAMYGVILLLDYGYGSLWAIRAAKALALDTLFT
RLRR*
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spliced messenger RNA

>Ggra7728.t1 ID=Ggra7728.t1|Name=Ggra7728.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=615bp|location=Sequence derived from alignment at tig00000088_pilon:170065..170748+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCTTCTTTCCTTCAGAGTTTATCCCCGAATACCGCCCAGCTAAGAA
GCACTCAGTCTTTTCGTCAAATGGCTGGTGGCTAAACCGGTGGCCGATAT
TGGGGTGGTTAGAGGCCTTTATCAAGGTAGCTGCTTGGATTGCTGTTCCT
CATGTAAGGACCCATATTCCTGAACAGATTCCCACCTTGTCGCCTTCTGC
AGCAGTTCAGCTCGCAGTAATGTTGGTTGCTTCCATTCTGTTGCTCTTCG
CAGTCATCGATCGTTTGGTTTACCGTGAGATCATCTCCATGATATTTGTC
TTTCCAAACAACTGGGCTCACTGGACCGTGACGTTAGCCTTATACCAGTG
TGGTCGAGAGGGTATCAACTCTAAGTATTTTCGTATCTTTTGCTGGCTCA
TGTTTGCCGGCGATGTCGTCAAGTTGGTGTTTTTTGCTTTCCATGACTTT
TCAAGAATAGGCGTTGGTCTCTATGTCTTGGTTTTCCTCACAGCACTATT
TGCTGCAATGTACGGTGTCATACTCCTGCTAGATTATGGATATGGGTCCT
TATGGGCTATACGGGCTGCGAAAGCATTGGCGCTAGACACTCTGTTCACC
AGATTACGACGATAA
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protein sequence of Ggra7728.t1

>Ggra7728.t1 ID=Ggra7728.t1|Name=Ggra7728.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=205bp
MVFFPSEFIPEYRPAKKHSVFSSNGWWLNRWPILGWLEAFIKVAAWIAVP
HVRTHIPEQIPTLSPSAAVQLAVMLVASILLLFAVIDRLVYREIISMIFV
FPNNWAHWTVTLALYQCGREGINSKYFRIFCWLMFAGDVVKLVFFAFHDF
SRIGVGLYVLVFLTALFAAMYGVILLLDYGYGSLWAIRAAKALALDTLFT
RLRR*
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mRNA from alignment at tig00000088_pilon:170065..170748+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7728.t1 ID=Ggra7728.t1|Name=Ggra7728.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00000088_pilon:170065..170748+ (Gracilaria gracilis GNS1m male)
ATGGTCTTCTTTCCTTCAGAGTTTATCCCCGAATACCGCCCAGCTAAGAA
GCACTCAGTCTTTTCGTCAAATGGCTGGTGGCTAAACCGGTGGCCGATAT
TGGGGTGGTTAGAGGCCTTTATCAAGGTAGCTGCTTGGATTGCTGTTCCT
CATGTAAGGACCCATATTCCTGAACAGATTCCCACCTTGTCGCCTTCTGC
AGCAGTTCAGCTCGCAGTAATGTTGGTTGCTTCCATTCTGTTGCTCTTCG
CAGTCATCGATCGTTTGGTTTACCGTGAGATCATCTCCATGATATTTGTC
TTTCCAAACAACTGGGCTCACTGGACCGTGACGTTAGCCTTATACCAGTG
TGGTCGAGAGGGTATCAACTCTAAGTATTTTCGTATCTTTTGCTGGCTCA
TGTTTGCCGGCGATGTCGTCAAGTTGGTGTTTTTTGCTTTCCATGACTTT
TCAAGAATAGGCGTTGGTCTCTATGTACGTTTCTTCTTCTTTCAATCACA
AGATGTGGATTCTAACGGAAGTCTGTTTTGATACACTGCACAGGTCTTGG
TTTTCCTCACAGCACTATTTGCTGCAATGTACGGTGTCATACTCCTGCTA
GATTATGGATATGGGTCCTTATGGGCTATACGGGCTGCGAAAGCATTGGC
GCTAGACACTCTGTTCACCAGATTACGACGATAA
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Coding sequence (CDS) from alignment at tig00000088_pilon:170065..170748+

>Ggra7728.t1 ID=Ggra7728.t1|Name=Ggra7728.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=615bp|location=Sequence derived from alignment at tig00000088_pilon:170065..170748+ (Gracilaria gracilis GNS1m male)
ATGGTCTTCTTTCCTTCAGAGTTTATCCCCGAATACCGCCCAGCTAAGAA
GCACTCAGTCTTTTCGTCAAATGGCTGGTGGCTAAACCGGTGGCCGATAT
TGGGGTGGTTAGAGGCCTTTATCAAGGTAGCTGCTTGGATTGCTGTTCCT
CATGTAAGGACCCATATTCCTGAACAGATTCCCACCTTGTCGCCTTCTGC
AGCAGTTCAGCTCGCAGTAATGTTGGTTGCTTCCATTCTGTTGCTCTTCG
CAGTCATCGATCGTTTGGTTTACCGTGAGATCATCTCCATGATATTTGTC
TTTCCAAACAACTGGGCTCACTGGACCGTGACGTTAGCCTTATACCAGTG
TGGTCGAGAGGGTATCAACTCTAAGTATTTTCGTATCTTTTGCTGGCTCA
TGTTTGCCGGCGATGTCGTCAAGTTGGTGTTTTTTGCTTTCCATGACTTT
TCAAGAATAGGCGTTGGTCTCTATGTCTTGGTTTTCCTCACAGCACTATT
TGCTGCAATGTACGGTGTCATACTCCTGCTAGATTATGGATATGGGTCCT
TATGGGCTATACGGGCTGCGAAAGCATTGGCGCTAGACACTCTGTTCACC
AGATTACGACGATAA
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