Ggra7720.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7720.t1
Unique Name	Ggra7720.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	368

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000088_pilon	contig	tig00000088_pilon:149751..150854 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S75_253V6.1
PFAMs	THF_DHG_CYH,THF_DHG_CYH_C
Max annot lvl	33090\|Viridiplantae
GOs	GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019219,GO:0019222,GO:0019238,GO:0019752,GO:0031323,GO:0034641,GO:0042558,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0044030,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046653,GO:0050789,GO:0050794,GO:0051052,GO:0051171,GO:0051186,GO:0055114,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:1901360,GO:1901564
Evalue	1.31e-125
EggNOG OGs	COG0190@1\|root,KOG0089@2759\|Eukaryota,37K6Z@33090\|Viridiplantae,3GFZP@35493\|Streptophyta
Description	Bifunctional protein FolD
COG category	H

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7720	Ggra7720	Gracilaria gracilis GNS1m male	gene	tig00000088_pilon 149751..150854 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7720.t1.start1	Ggra7720.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000088_pilon 149751..149753 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7720.t1.CDS1	Ggra7720.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000088_pilon 149751..150854 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7720.t1.exon1	Ggra7720.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000088_pilon 149751..150854 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7720.t1.stop1	Ggra7720.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000088_pilon 150852..150854 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7720.t1	Ggra7720.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000088_pilon 149751..150854 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000088_pilon:149751..150854+
coding sequence from alignment at tig00000088_pilon:149751..150854+

mRNA sequence

>Ggra7720.t1 ID=Ggra7720.t1|Name=Ggra7720.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=368bp
MQSSMSPCFILSPVARRVAVRSAQLGICSRLTSSFLAIDEKKVANSLWVT
QNRVQETPPASVSAVTHAQAQKLDGKLTAATIRQEIAREIASLVQTRGET
ARPGLAVVIVGERRDSQTYVRSKRKACDEVGIASFGFELPADCTQEQLEE
VVDQLNSRKDVHGILIQLPLPDHIDDEKLLDRIRLEKDVDGFHPLNIGRL
CMSGRTPPLFIPCTPQGCIELLDRYAIDIDGKNAVVIGRSNIVGLPVAML
LMHRNATVTICHSRTKDTREKIQQADIVIAACGRAEFVKADWLKPGAVVI
DVGINAVEDATKKKGYRLVGDVDYENSADVASYITPVPGGVGPMTIAMLL
SNTLRACREQIGEQEYS*

spliced messenger RNA

>Ggra7720.t1 ID=Ggra7720.t1|Name=Ggra7720.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1104bp|location=Sequence derived from alignment at tig00000088_pilon:149751..150854+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTCTTCCATGTCACCATGTTTCATTTTGTCTCCAGTTGCCAGGAG
AGTAGCTGTAAGAAGCGCACAACTTGGAATATGTTCCAGGCTCACATCTT
CCTTCTTGGCAATTGACGAGAAAAAGGTCGCGAACTCCCTCTGGGTCACG
CAAAACCGTGTCCAAGAGACACCTCCTGCGTCTGTTTCTGCAGTAACTCA
TGCCCAAGCACAAAAGCTAGACGGAAAACTAACTGCTGCCACAATACGCC
AAGAAATTGCACGGGAGATCGCGAGCCTTGTGCAGACAAGAGGAGAGACT
GCTCGACCTGGTCTAGCAGTAGTTATTGTTGGTGAGCGAAGGGACTCTCA
AACGTATGTTAGATCAAAAAGGAAGGCATGTGATGAAGTTGGAATAGCGT
CATTTGGATTTGAATTGCCCGCAGATTGTACCCAAGAGCAACTTGAAGAG
GTTGTCGATCAACTTAATTCACGCAAAGATGTGCATGGTATTCTCATACA
GTTACCCTTACCAGATCACATTGATGACGAAAAGCTTCTCGATCGCATCA
GGTTGGAGAAGGATGTGGATGGGTTCCATCCGCTTAACATCGGGCGGTTA
TGCATGAGTGGAAGGACACCTCCTCTGTTCATTCCATGTACGCCACAGGG
CTGCATAGAGCTGCTCGATCGATACGCAATTGATATTGATGGAAAGAATG
CAGTTGTCATCGGAAGAAGTAATATCGTAGGACTACCCGTGGCAATGCTT
CTAATGCATCGAAACGCGACAGTAACTATATGTCACTCAAGGACAAAAGA
CACTCGCGAGAAAATTCAACAGGCGGATATTGTAATTGCAGCCTGTGGGC
GTGCAGAGTTCGTTAAGGCTGACTGGTTGAAACCTGGTGCCGTTGTGATT
GATGTCGGAATTAATGCCGTTGAAGATGCTACAAAGAAGAAGGGATATCG
TCTCGTGGGGGATGTGGATTATGAGAACTCGGCCGATGTTGCATCCTACA
TAACTCCAGTTCCTGGTGGCGTAGGTCCAATGACTATTGCTATGTTGCTC
TCGAACACTTTGCGAGCGTGTAGAGAGCAGATTGGGGAACAAGAATATTC
ATAA

protein sequence of Ggra7720.t1

>Ggra7720.t1 ID=Ggra7720.t1|Name=Ggra7720.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=368bp
MQSSMSPCFILSPVARRVAVRSAQLGICSRLTSSFLAIDEKKVANSLWVT
QNRVQETPPASVSAVTHAQAQKLDGKLTAATIRQEIAREIASLVQTRGET
ARPGLAVVIVGERRDSQTYVRSKRKACDEVGIASFGFELPADCTQEQLEE
VVDQLNSRKDVHGILIQLPLPDHIDDEKLLDRIRLEKDVDGFHPLNIGRL
CMSGRTPPLFIPCTPQGCIELLDRYAIDIDGKNAVVIGRSNIVGLPVAML
LMHRNATVTICHSRTKDTREKIQQADIVIAACGRAEFVKADWLKPGAVVI
DVGINAVEDATKKKGYRLVGDVDYENSADVASYITPVPGGVGPMTIAMLL
SNTLRACREQIGEQEYS*

mRNA from alignment at tig00000088_pilon:149751..150854+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7720.t1 ID=Ggra7720.t1|Name=Ggra7720.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1104bp|location=Sequence derived from alignment at tig00000088_pilon:149751..150854+ (Gracilaria gracilis GNS1m male)
ATGCAGTCTTCCATGTCACCATGTTTCATTTTGTCTCCAGTTGCCAGGAG
AGTAGCTGTAAGAAGCGCACAACTTGGAATATGTTCCAGGCTCACATCTT
CCTTCTTGGCAATTGACGAGAAAAAGGTCGCGAACTCCCTCTGGGTCACG
CAAAACCGTGTCCAAGAGACACCTCCTGCGTCTGTTTCTGCAGTAACTCA
TGCCCAAGCACAAAAGCTAGACGGAAAACTAACTGCTGCCACAATACGCC
AAGAAATTGCACGGGAGATCGCGAGCCTTGTGCAGACAAGAGGAGAGACT
GCTCGACCTGGTCTAGCAGTAGTTATTGTTGGTGAGCGAAGGGACTCTCA
AACGTATGTTAGATCAAAAAGGAAGGCATGTGATGAAGTTGGAATAGCGT
CATTTGGATTTGAATTGCCCGCAGATTGTACCCAAGAGCAACTTGAAGAG
GTTGTCGATCAACTTAATTCACGCAAAGATGTGCATGGTATTCTCATACA
GTTACCCTTACCAGATCACATTGATGACGAAAAGCTTCTCGATCGCATCA
GGTTGGAGAAGGATGTGGATGGGTTCCATCCGCTTAACATCGGGCGGTTA
TGCATGAGTGGAAGGACACCTCCTCTGTTCATTCCATGTACGCCACAGGG
CTGCATAGAGCTGCTCGATCGATACGCAATTGATATTGATGGAAAGAATG
CAGTTGTCATCGGAAGAAGTAATATCGTAGGACTACCCGTGGCAATGCTT
CTAATGCATCGAAACGCGACAGTAACTATATGTCACTCAAGGACAAAAGA
CACTCGCGAGAAAATTCAACAGGCGGATATTGTAATTGCAGCCTGTGGGC
GTGCAGAGTTCGTTAAGGCTGACTGGTTGAAACCTGGTGCCGTTGTGATT
GATGTCGGAATTAATGCCGTTGAAGATGCTACAAAGAAGAAGGGATATCG
TCTCGTGGGGGATGTGGATTATGAGAACTCGGCCGATGTTGCATCCTACA
TAACTCCAGTTCCTGGTGGCGTAGGTCCAATGACTATTGCTATGTTGCTC
TCGAACACTTTGCGAGCGTGTAGAGAGCAGATTGGGGAACAAGAATATTC
ATAA

Coding sequence (CDS) from alignment at tig00000088_pilon:149751..150854+

>Ggra7720.t1 ID=Ggra7720.t1|Name=Ggra7720.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1104bp|location=Sequence derived from alignment at tig00000088_pilon:149751..150854+ (Gracilaria gracilis GNS1m male)
ATGCAGTCTTCCATGTCACCATGTTTCATTTTGTCTCCAGTTGCCAGGAG
AGTAGCTGTAAGAAGCGCACAACTTGGAATATGTTCCAGGCTCACATCTT
CCTTCTTGGCAATTGACGAGAAAAAGGTCGCGAACTCCCTCTGGGTCACG
CAAAACCGTGTCCAAGAGACACCTCCTGCGTCTGTTTCTGCAGTAACTCA
TGCCCAAGCACAAAAGCTAGACGGAAAACTAACTGCTGCCACAATACGCC
AAGAAATTGCACGGGAGATCGCGAGCCTTGTGCAGACAAGAGGAGAGACT
GCTCGACCTGGTCTAGCAGTAGTTATTGTTGGTGAGCGAAGGGACTCTCA
AACGTATGTTAGATCAAAAAGGAAGGCATGTGATGAAGTTGGAATAGCGT
CATTTGGATTTGAATTGCCCGCAGATTGTACCCAAGAGCAACTTGAAGAG
GTTGTCGATCAACTTAATTCACGCAAAGATGTGCATGGTATTCTCATACA
GTTACCCTTACCAGATCACATTGATGACGAAAAGCTTCTCGATCGCATCA
GGTTGGAGAAGGATGTGGATGGGTTCCATCCGCTTAACATCGGGCGGTTA
TGCATGAGTGGAAGGACACCTCCTCTGTTCATTCCATGTACGCCACAGGG
CTGCATAGAGCTGCTCGATCGATACGCAATTGATATTGATGGAAAGAATG
CAGTTGTCATCGGAAGAAGTAATATCGTAGGACTACCCGTGGCAATGCTT
CTAATGCATCGAAACGCGACAGTAACTATATGTCACTCAAGGACAAAAGA
CACTCGCGAGAAAATTCAACAGGCGGATATTGTAATTGCAGCCTGTGGGC
GTGCAGAGTTCGTTAAGGCTGACTGGTTGAAACCTGGTGCCGTTGTGATT
GATGTCGGAATTAATGCCGTTGAAGATGCTACAAAGAAGAAGGGATATCG
TCTCGTGGGGGATGTGGATTATGAGAACTCGGCCGATGTTGCATCCTACA
TAACTCCAGTTCCTGGTGGCGTAGGTCCAATGACTATTGCTATGTTGCTC
TCGAACACTTTGCGAGCGTGTAGAGAGCAGATTGGGGAACAAGAATATTC
ATAA