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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 1380394.JADL01000001_gene3102 |
| PFAMs | ABC_membrane,ABC_tran |
| Max annot lvl | 204441|Rhodospirillales |
| KEGG ko | ko:K06147 |
| KEGG TC | 3.A.1.106,3.A.1.109,3.A.1.21 |
| Evalue | 3.88e-153 |
| EggNOG OGs | COG5265@1|root,COG5265@2|Bacteria,1NSKS@1224|Proteobacteria,2UQAG@28211|Alphaproteobacteria,2JR6D@204441|Rhodospirillales |
| Description | COG5265 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components |
| COG category | V |
| BRITE | ko00000,ko02000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra7717.t1.stop1 | Ggra7717.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000088_pilon 143104..143106 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra7717.t1.start1 | Ggra7717.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000088_pilon 145831..145833 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra7717.t1 ID=Ggra7717.t1|Name=Ggra7717.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=677bp MPRFHSTWGSRRRATAAGPTERTPLLQSRQGDGINWLETYHLARPYIIPE TSKLRAVAFFSFLMVLCNKVLILVPPFAYKLAVDALANNLLGGPLVIPYS AVVLYIGSRVLADVVNGLQSYSYSIVSTDTKKRFSIDLFSHLQSLSLAFH LQRKTGEVLRIMNRGKSSIETILSTVLTNLLPILFEVSLVSGIFFHLGTP LIALVILVTVIAYFVYTILITKWRVQIRRDVIEIDTKLFQKTADTLFNYE TVKMFGMEQEEAAAYRELAEEYRGKAVYSRGSLSILNFGQSFIQRSGLLG SMILAARAVAFGGLTPGDFVLINTYVGQIFQPLFFLGSSYRIISQAATDL ENSIDLLQQKVTVKDRSDAVPLLISEEEILTGRAGEVTFENVSFCYKGEE RGTNGGLRNISFKVQPGRMVALVGSSGAGKSTIMRLLLRFYDVDSGKILI DGKDIRSFSQKSLRQSIGVVAQDTVLFNRTLRYNISYGKQDATDAETLDA ATSAALGPFIDSLPLGLDTVVGERGVRLSGGERQRVGCARCVIKSPAIVL LDEATSALDTHTERELQTNFKEVCKNRTTVVVAHRLSTVMMADEILVLGK EETENKRPATGDLKFDPDEGFEKDTSPISYGIIIERGTHKELLQRGGVYA KMWESQTSAAKESIEDMESSSADSNM* back to topspliced messenger RNA >Ggra7717.t1 ID=Ggra7717.t1|Name=Ggra7717.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2031bp|location=Sequence derived from alignment at tig00000088_pilon:143104..145833- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGCCGCGGTTTCACTCCACGTGGGGCTCTAGGCGCAGAGCAACTGCAGC CGGGCCTACAGAGCGAACTCCGCTACTACAATCGAGGCAGGGAGATGGAA TAAACTGGCTGGAAACTTATCATTTGGCTCGTCCGTATATTATCCCAGAG ACGAGCAAGCTACGTGCTGTTGCTTTCTTCTCATTTTTGATGGTGCTCTG TAATAAGGTTCTAATCCTTGTTCCTCCATTTGCCTACAAACTCGCTGTAG ACGCTTTGGCTAACAACCTCCTTGGAGGACCTCTGGTCATTCCATATAGT GCCGTTGTTCTCTACATTGGGTCCCGGGTGCTCGCCGATGTTGTCAACGG GTTGCAATCATACTCGTATAGTATTGTGTCTACTGATACCAAAAAGAGGT TTTCAATCGACTTGTTTTCACACTTACAAAGCCTCAGTCTTGCGTTTCAC TTACAGCGAAAGACAGGTGAGGTTCTTAGGATCATGAACCGAGGCAAAAG TAGCATTGAAACCATTCTATCCACTGTTTTAACCAACTTGCTTCCAATAC TGTTTGAAGTTTCTCTTGTCAGTGGTATTTTCTTTCATCTTGGAACTCCT TTGATTGCTCTCGTTATTTTGGTCACAGTAATCGCCTATTTCGTTTACAC GATCTTAATCACAAAATGGCGTGTCCAAATTCGACGTGACGTTATTGAAA TAGACACCAAACTTTTTCAAAAGACTGCTGATACTCTGTTCAACTATGAG ACCGTGAAAATGTTTGGAATGGAACAAGAAGAAGCAGCAGCATACAGAGA ACTAGCGGAAGAGTATCGTGGAAAAGCGGTATATTCCCGAGGATCACTCA GCATTCTAAACTTTGGTCAGTCTTTTATACAAAGGAGTGGTCTATTAGGT TCGATGATTCTTGCAGCCAGAGCAGTTGCTTTCGGTGGTTTGACGCCAGG AGATTTTGTGTTGATCAACACTTACGTTGGCCAAATCTTCCAGCCTCTGT TCTTCCTTGGATCGTCCTACAGAATCATATCCCAAGCTGCTACCGATCTT GAGAACAGCATCGACTTACTGCAGCAAAAGGTTACGGTGAAGGATCGCAG TGATGCTGTTCCATTACTCATTTCTGAGGAAGAAATTCTAACAGGTCGCG CAGGGGAGGTCACATTTGAGAACGTTTCTTTTTGCTACAAAGGGGAGGAA AGAGGAACCAATGGAGGGCTTCGAAACATATCGTTCAAAGTACAACCAGG AAGAATGGTTGCCCTTGTTGGCAGCTCAGGAGCAGGGAAAAGCACCATAA TGCGTCTTCTTCTCAGGTTCTACGATGTAGACAGCGGCAAGATTCTAATA GATGGAAAGGATATTCGTTCGTTCTCCCAAAAATCTCTTCGCCAAAGCAT TGGTGTTGTTGCCCAAGATACCGTCTTGTTCAACAGAACTCTTAGATACA ACATTTCTTACGGAAAGCAGGATGCAACAGATGCTGAAACTCTTGACGCA GCAACCTCTGCCGCGTTAGGGCCGTTTATCGATTCTCTTCCTTTGGGTCT TGATACCGTAGTTGGAGAAAGAGGGGTTCGGTTATCTGGTGGTGAACGAC AACGCGTCGGATGCGCTAGATGTGTTATCAAATCTCCTGCAATAGTTCTC CTGGACGAAGCAACATCTGCACTTGACACTCACACTGAGCGCGAACTCCA AACGAATTTCAAAGAAGTTTGCAAAAACCGAACGACAGTAGTAGTGGCCC ACAGACTGTCGACGGTCATGATGGCGGATGAAATACTCGTACTTGGGAAG GAGGAAACCGAAAATAAGCGCCCTGCAACAGGAGATCTCAAATTCGATCC TGATGAAGGGTTTGAAAAGGATACTTCCCCCATTTCATATGGCATCATTA TCGAAAGGGGAACCCACAAAGAACTTCTTCAACGTGGTGGAGTATATGCG AAAATGTGGGAATCCCAAACTAGTGCAGCTAAGGAAAGTATTGAAGATAT GGAAAGCAGCTCGGCTGATTCCAATATGTGA back to topprotein sequence of Ggra7717.t1 >Ggra7717.t1 ID=Ggra7717.t1|Name=Ggra7717.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=677bp
MPRFHSTWGSRRRATAAGPTERTPLLQSRQGDGINWLETYHLARPYIIPE TSKLRAVAFFSFLMVLCNKVLILVPPFAYKLAVDALANNLLGGPLVIPYS AVVLYIGSRVLADVVNGLQSYSYSIVSTDTKKRFSIDLFSHLQSLSLAFH LQRKTGEVLRIMNRGKSSIETILSTVLTNLLPILFEVSLVSGIFFHLGTP LIALVILVTVIAYFVYTILITKWRVQIRRDVIEIDTKLFQKTADTLFNYE TVKMFGMEQEEAAAYRELAEEYRGKAVYSRGSLSILNFGQSFIQRSGLLG SMILAARAVAFGGLTPGDFVLINTYVGQIFQPLFFLGSSYRIISQAATDL ENSIDLLQQKVTVKDRSDAVPLLISEEEILTGRAGEVTFENVSFCYKGEE RGTNGGLRNISFKVQPGRMVALVGSSGAGKSTIMRLLLRFYDVDSGKILI DGKDIRSFSQKSLRQSIGVVAQDTVLFNRTLRYNISYGKQDATDAETLDA ATSAALGPFIDSLPLGLDTVVGERGVRLSGGERQRVGCARCVIKSPAIVL LDEATSALDTHTERELQTNFKEVCKNRTTVVVAHRLSTVMMADEILVLGK EETENKRPATGDLKFDPDEGFEKDTSPISYGIIIERGTHKELLQRGGVYA KMWESQTSAAKESIEDMESSSADSNM* back to topmRNA from alignment at tig00000088_pilon:143104..145833- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra7717.t1 ID=Ggra7717.t1|Name=Ggra7717.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2730bp|location=Sequence derived from alignment at tig00000088_pilon:143104..145833- (Gracilaria gracilis GNS1m male) ATGCCGCGGTTTCACTCCACGTGGGGCTCTAGGCGCAGAGCAACTGCAGC
CGGGCCTACAGAGCGAACTCCGCTACTACAATCGAGGCAGGGAGATGGAA
TAAACTGGCTGGAAACTTATCATTTGGCTCGTCCGTATATTATCCCAGAG
ACGAGCAAGCTACGTGCTGTTGCTTTCTTCTCATTTTTGATGGTGCTCTG
TAATAAGGTTCTAATCCTTGTTCCTCCATTTGCCTACAAACTCGCTGTAG
ACGCTTTGGCTAACAACCTCCTTGGAGGACCTCTGGTCATTCCATATAGT
GCCGTTGTTCTCTACATTGGGTCCCGGGTGCTCGCCGATGTTGTCAACGG
GTTGCAATCATACTCGTATAGTATTGTGTCTACTGATACCAAAAAGAGGT
TTTCAATCGACTTGTTTTCACACTTACAAAGCCTCAGTCTTGCGTTTCAC
TTACAGCGAAAGACAGGTGAGGTTCTTAGGATCATGAACCGAGGCAAAAG
TAGCATTGAAACCATTCTATCCACTGTTTTAACCAACTTGCTTCCAATGT
ATGCTATTCCCTTCTTCCTGAATACTTTCTGCAACCATGTACCTAACACA
AACAGACAGACTGTTTGAAGTTTCTCTTGTCAGTGGTATTTTCTTTCATC
TTGGAACTCCTTTGATTGCTCTCGTTATTTTGGTCACAGTAATCGCCTAT
TTCGTTTACACGATCTTAATCACAAAATGGCGGTATGTGAACTCGAAAGA
CTTCATTAGAATATGCTTGGAATGATTGCGTCTAACTTTTCCTTTTGTTC
CTGATATCAGTGTCCAAATTCGACGTGACGTTATTGAAATAGACACCAAA
CTTTTTCGTGAGTATTTCATTCTGACCGTTTTGTCTTTGAGGTTGCGATG
AGCCAGCCCAGCACTTACATTCGTTTGTACTTTAATGCAACAACAGAAAA
GGTAAGCGGATCTATTTGTTCACCAGATTGTAACAACGACATGTGCTAAC
TTCCTTGGTTCCCTAGACTGCTGATACTCTGTTCAACTATGAGACCGTGA
AAATGTTTGGAATGGAACAAGAAGAAGCAGCAGCATACAGAGAACTAGCG
GAAGAGTATCGTGGAAAAGCGGTATATTCCCGAGGATCACTCAGCATTCT
AAACTTTGGTCAGTCTTTTATACAAAGGAGTGGTCTATTAGGTTCGATGA
TTCTTGCAGCCAGAGCAGTTGCTTTCGGTGGTTTGACGCCAGGAGATTTT
GTGTTGATCAACACTTACGTTGGCCAAATCTTCCAGCCTCTGTTCGTAAG
TTACGTATCCTTTCACACTATTAATGTCCACGGGGATCAGTTGAGTACTA
TGTAAGGAATCCTGATCCTTTTGCAGTTTCAATTTGACACTTACACATAC
ATACTTCATTTGAATTGGACAGTTCCTTGGATCGTCCTACAGAATCATAT
CCCAAGCTGCTACCGATCTTGAGAACAGCATCGACTTACTGCAGCAAAAG
GTTACGGTGAAGGATCGCAGTGATGCTGTTCCATTACTCATTTCTGAGGA
AGAAATTCTAACAGGTCGCGCAGGGGAGGTCACATTTGAGAACGTTTCTT
TTTGCTACAAAGGGGAGGAAAGAGGAACCAATGGAGGGCTTCGAAACATA
TCGTTCAAAGTACAACCAGGAAGAATGGTTGCCCTTGTTGGCAGCTCAGG
AGCAGGGAAAAGGTGGGTAACAAGAAGAGAATGTGTTATTTTGTGTAATA
ACAATGCGCTAACTTTTGCATGTCCTTTTGCATGTTCGCACCTTTTTTCG
CTTCTAGCACCATAATGCGTCTTCTTCTCAGGTTCTACGATGTAGACAGC
GGCAAGATTCTAATAGATGGAAAGGATATTCGTTCGTTCTCCCAAAAATC
TCTTCGCCAAAGCATTGGTGTTGTTGCCCAAGATACCGTAAGTGATGAAG
TCTAACTTCAACATGGAAGATGTTCGAGCTGATGGGCTCCTTGATTATGG
TTCTGACTAGTTCTTTCCATTTGTGTTTCAGGTCTTGTTCAACAGAACTC
TTAGATACAACATTTCTTACGGAAAGCAGGATGCAACAGATGCTGAAACT
CTTGACGCAGCAACCTCTGCCGCGTTAGGGCCGTTTATCGATTCTCTTCC
TTTGGGTCTTGATACCGTAGTTGGAGAAAGAGGGGTTCGGTTATCTGGTG
GTGAACGACAACGCGTCGGATGCGCTAGATGTGTTATCAAATCTCCTGCA
ATAGTTCTCCTGGACGAAGCAACATCTGCACTTGTACGTGGGCACTCCAG
ACCATAACTCACTACTCACAAGGAGAATTTGTATCTTGGCTAACCCTTGT
TTCATTATTCTTTGATTGTGTAGGACACTCACACTGAGCGCGAACTCCAA
ACGAATTTCAAAGAAGTTTGCAAAAACCGAACGACAGTAGTAGTGGCCCA
CAGACTGTCGACGGTCATGATGGCGGATGAAATACTCGTACTTGGGAAGG
AGGAAACCGAAAATAAGCGCCCTGCAACAGGAGATCTCAAATTCGATCCT
GATGAAGGGTTTGAAAAGGATACTTCCCCCATTTCATATGGCATCATTAT
CGAAAGGGGAACCCACAAAGAACTTCTTCAACGTGGTGGAGTATATGCGA
AAATGTGGGAATCCCAAACTAGTGCAGCTAAGGAAAGTATTGAAGATATG
GAAAGCAGCTCGGCTGATTCCAATATGTGA back to topCoding sequence (CDS) from alignment at tig00000088_pilon:143104..145833- >Ggra7717.t1 ID=Ggra7717.t1|Name=Ggra7717.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2031bp|location=Sequence derived from alignment at tig00000088_pilon:143104..145833- (Gracilaria gracilis GNS1m male) ATGCCGCGGTTTCACTCCACGTGGGGCTCTAGGCGCAGAGCAACTGCAGC CGGGCCTACAGAGCGAACTCCGCTACTACAATCGAGGCAGGGAGATGGAA TAAACTGGCTGGAAACTTATCATTTGGCTCGTCCGTATATTATCCCAGAG ACGAGCAAGCTACGTGCTGTTGCTTTCTTCTCATTTTTGATGGTGCTCTG TAATAAGGTTCTAATCCTTGTTCCTCCATTTGCCTACAAACTCGCTGTAG ACGCTTTGGCTAACAACCTCCTTGGAGGACCTCTGGTCATTCCATATAGT GCCGTTGTTCTCTACATTGGGTCCCGGGTGCTCGCCGATGTTGTCAACGG GTTGCAATCATACTCGTATAGTATTGTGTCTACTGATACCAAAAAGAGGT TTTCAATCGACTTGTTTTCACACTTACAAAGCCTCAGTCTTGCGTTTCAC TTACAGCGAAAGACAGGTGAGGTTCTTAGGATCATGAACCGAGGCAAAAG TAGCATTGAAACCATTCTATCCACTGTTTTAACCAACTTGCTTCCAATAC TGTTTGAAGTTTCTCTTGTCAGTGGTATTTTCTTTCATCTTGGAACTCCT TTGATTGCTCTCGTTATTTTGGTCACAGTAATCGCCTATTTCGTTTACAC GATCTTAATCACAAAATGGCGTGTCCAAATTCGACGTGACGTTATTGAAA TAGACACCAAACTTTTTCAAAAGACTGCTGATACTCTGTTCAACTATGAG ACCGTGAAAATGTTTGGAATGGAACAAGAAGAAGCAGCAGCATACAGAGA ACTAGCGGAAGAGTATCGTGGAAAAGCGGTATATTCCCGAGGATCACTCA GCATTCTAAACTTTGGTCAGTCTTTTATACAAAGGAGTGGTCTATTAGGT TCGATGATTCTTGCAGCCAGAGCAGTTGCTTTCGGTGGTTTGACGCCAGG AGATTTTGTGTTGATCAACACTTACGTTGGCCAAATCTTCCAGCCTCTGT TCTTCCTTGGATCGTCCTACAGAATCATATCCCAAGCTGCTACCGATCTT GAGAACAGCATCGACTTACTGCAGCAAAAGGTTACGGTGAAGGATCGCAG TGATGCTGTTCCATTACTCATTTCTGAGGAAGAAATTCTAACAGGTCGCG CAGGGGAGGTCACATTTGAGAACGTTTCTTTTTGCTACAAAGGGGAGGAA AGAGGAACCAATGGAGGGCTTCGAAACATATCGTTCAAAGTACAACCAGG AAGAATGGTTGCCCTTGTTGGCAGCTCAGGAGCAGGGAAAAGCACCATAA TGCGTCTTCTTCTCAGGTTCTACGATGTAGACAGCGGCAAGATTCTAATA GATGGAAAGGATATTCGTTCGTTCTCCCAAAAATCTCTTCGCCAAAGCAT TGGTGTTGTTGCCCAAGATACCGTCTTGTTCAACAGAACTCTTAGATACA ACATTTCTTACGGAAAGCAGGATGCAACAGATGCTGAAACTCTTGACGCA GCAACCTCTGCCGCGTTAGGGCCGTTTATCGATTCTCTTCCTTTGGGTCT TGATACCGTAGTTGGAGAAAGAGGGGTTCGGTTATCTGGTGGTGAACGAC AACGCGTCGGATGCGCTAGATGTGTTATCAAATCTCCTGCAATAGTTCTC CTGGACGAAGCAACATCTGCACTTGACACTCACACTGAGCGCGAACTCCA AACGAATTTCAAAGAAGTTTGCAAAAACCGAACGACAGTAGTAGTGGCCC ACAGACTGTCGACGGTCATGATGGCGGATGAAATACTCGTACTTGGGAAG GAGGAAACCGAAAATAAGCGCCCTGCAACAGGAGATCTCAAATTCGATCC TGATGAAGGGTTTGAAAAGGATACTTCCCCCATTTCATATGGCATCATTA TCGAAAGGGGAACCCACAAAGAACTTCTTCAACGTGGTGGAGTATATGCG AAAATGTGGGAATCCCAAACTAGTGCAGCTAAGGAAAGTATTGAAGATAT GGAAAGCAGCTCGGCTGATTCCAATATGTGA back to top
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