Ggra7625.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7625.t1
Unique Name	Ggra7625.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	504

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000866_pilon	contig	tig00000866_pilon:441025..443924 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	28583.AMAG_11711T0
Max annot lvl	4751\|Fungi
Evalue	1.6e-07
EggNOG OGs	2E3H1@1\|root,2SAJC@2759\|Eukaryota,3ARBF@33154\|Opisthokonta,3PFVF@4751\|Fungi
Description	Allomyces macrogynus ATCC 38327
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7625	Ggra7625	Gracilaria gracilis GNS1m male	gene	tig00000866_pilon 441025..443924 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7625.t1	Ggra7625.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000866_pilon 441025..443924 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7625.t1.start1	Ggra7625.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000866_pilon 441025..441027 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7625.t1.CDS1	Ggra7625.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000866_pilon 441025..441698 +
Ggra7625.t1.CDS2	Ggra7625.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000866_pilon 443087..443924 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7625.t1.exon1	Ggra7625.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000866_pilon 441025..441698 +
Ggra7625.t1.exon2	Ggra7625.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000866_pilon 443087..443924 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7625.t1.intron1	Ggra7625.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000866_pilon 441699..443086 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7625.t1.stop1	Ggra7625.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000866_pilon 443922..443924 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000866_pilon:441025..443924+
coding sequence from alignment at tig00000866_pilon:441025..443924+

mRNA sequence

>Ggra7625.t1 ID=Ggra7625.t1|Name=Ggra7625.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=504bp
MTQPQSTSPRVCRVGGQPQFGERNCRGPCDLVPVRARPRWANFWSPRHPA
ATYRRGQRAVIKYARNNHGPGGFVRLTLVPTDRVMSAAAHAANAFHYSCW
GAHAVIARGNELRRARFGFSMVGSDGGFHHFPKGYYQVTVTIPTVVPDGD
YVLGWAWYGGTGGQLRSATRQQYPKSTGYFGDYYSCAFVRIKGGRSTRTY
RPRFVNNMRRFSSVGCMASADRPGVMTSSAPTPPPTPRRVVEYELENNER
LLRRLQISERRQSHPSRAEQKMEGVSASQGRPPKCNSTRKTAAEPRRGIK
KPTYRSATAAAARAATSRRNTNAKKTRAVDRSSKCSQPSQRSAQRNKTPS
GTGTFRPATNRTNHADIQSQVHQHTHRDPAGAHWRGRAAKRTYLVRRSSQ
PRVSHPYRKMERGELYWNTTPQGGMAVLPASAVEIGEAGRASFGQTTATF
PLGPSVAYVANAMYYDVFASVPLAGGDHGGRAQGTVVLPSGLVVHGGSSC
GWR*

spliced messenger RNA

>Ggra7625.t1 ID=Ggra7625.t1|Name=Ggra7625.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1512bp|location=Sequence derived from alignment at tig00000866_pilon:441025..443924+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atgacgcagccgcagtccacgtcgccgcgcgtgtgccgcgTGGGCGGGCA
GCCGCAGTTTGGCGAGCGCAACTGCCGCGGCCCGTGCGACTTGGTGCCGG
TACGCGCGCGGCCGCGCTGGGCAAACTTCTGGTCGCCGCGCCACCCGGCG
GCCACGTACCGGCGCGGGCAGCGCGCGGTGATCAAGTACGCGCGCAACAA
CCACGGGCCGGGCGGCTTTGTGCGCCTCACGTTGGTGCCGACCGACCGCG
TGATGAGCGCGGCGGCGCACGCCGCCAACGCGTTCCACTACAGCTGCTGG
GGCGCGCACGCGGTGATTGCGCGCGGCAACGAGCTGCGACGCGCACGGTT
CGGCTTCTCCATGGTGGGGTCGGACGGCGGCTTCCACCACTTTCCGAAGG
GCTACTACCAGGTGACGGTGACCATCCCCACCGTGGTGCCGGACGGCGAC
TACGTGCTGGGCTGGGCGTGGTACGGCGGCACGGGCGGGCAGCTGCGCAG
CGCCACGCGCCAGCAGTACCCGAAGAGCACGGGCTACTTTGGCGACTACT
ACTCGTGCGCGTTTGTGCGCATCAAGGGCGGCCGCAGCACGCGCACGTAC
CGGCCGCGCTTCGTCAACAACATGCGCCGCTTCTCCTCCGTGGGCTGCAT
GGCGTCGGCCGACCGCCCGGGCGTCATGACTTCTTCCGCCCCCACCCCTC
CTCCGACTCCACGCCGCGTCGTCGAATATGAGCTTGAAAACAATGAGCGC
CTTCTACGTCGTTTGCAAATCAGCGAACGCCGCCAAAGCCACCCCAGCCG
TGCTGAGCAGAAAATGGAAGGCGTGTCTGCGTCGCAAGGAAGGCCGCCAA
AGTGCAACTCAACGCGAAAGACTGCCGCCGAGCCACGGCGAGGCATTAAA
AAACCCACTTACCGCTCAGCTACCGCCGCAGCCGCCCGCGCGGCGACCAG
TCGCAGGAACACCAATGCTAAGAAAACGCGTGCTGTCGACCGCAGCTCCA
AATGTTCACAGCCTTCACAGCGGTCAGCGCAACGCAATAAGACGCCATCT
GGGACCGGAACGTTCCGACCAGCCACCAATCGTACGAACCATGCTGACAT
TCAGTCGCAAGTGCACCAGCACACACATCGAGACCCTGCGGGGGCGCACT
GGCGCGGCAGAGCGGCAAAGCGGACCTACCTCGTACGCAGAAGCTCGCAG
CCGCGTGTGAGTCACCCGTACAGGAAGATGGAGCGAGGCGAGCTATACTG
GAATACGACGCCACAGGGCGGCATGGCCGTGTTGCCCGCGTCAGCTGTCG
AGATAGGCGAGGCTGGGCGTGCCAGCTTCGGCCAAACAACAGCGACTTTT
CCTTTGGGGCCGTCAGTAGCGTATGTGGCGAATGCTATGTATTACGACGT
CTTTGCAAGCGTGCCACTGGCGGGGGGCGACCATGGGGGGCGGGCGCAGG
GAACGGTGGTGCTACCGTCTGGCTTGGTGGTGCACGGCGGCTCCAGTTGC
GGTTGGCGATAA

protein sequence of Ggra7625.t1

>Ggra7625.t1 ID=Ggra7625.t1|Name=Ggra7625.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=504bp
MTQPQSTSPRVCRVGGQPQFGERNCRGPCDLVPVRARPRWANFWSPRHPA
ATYRRGQRAVIKYARNNHGPGGFVRLTLVPTDRVMSAAAHAANAFHYSCW
GAHAVIARGNELRRARFGFSMVGSDGGFHHFPKGYYQVTVTIPTVVPDGD
YVLGWAWYGGTGGQLRSATRQQYPKSTGYFGDYYSCAFVRIKGGRSTRTY
RPRFVNNMRRFSSVGCMASADRPGVMTSSAPTPPPTPRRVVEYELENNER
LLRRLQISERRQSHPSRAEQKMEGVSASQGRPPKCNSTRKTAAEPRRGIK
KPTYRSATAAAARAATSRRNTNAKKTRAVDRSSKCSQPSQRSAQRNKTPS
GTGTFRPATNRTNHADIQSQVHQHTHRDPAGAHWRGRAAKRTYLVRRSSQ
PRVSHPYRKMERGELYWNTTPQGGMAVLPASAVEIGEAGRASFGQTTATF
PLGPSVAYVANAMYYDVFASVPLAGGDHGGRAQGTVVLPSGLVVHGGSSC
GWR*

mRNA from alignment at tig00000866_pilon:441025..443924+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7625.t1 ID=Ggra7625.t1|Name=Ggra7625.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2900bp|location=Sequence derived from alignment at tig00000866_pilon:441025..443924+ (Gracilaria gracilis GNS1m male)
atgacgcagccgcagtccacgtcgccgcgcgtgtgccgcgTGGGCGGGCA
GCCGCAGTTTGGCGAGCGCAACTGCCGCGGCCCGTGCGACTTGGTGCCGG
TACGCGCGCGGCCGCGCTGGGCAAACTTCTGGTCGCCGCGCCACCCGGCG
GCCACGTACCGGCGCGGGCAGCGCGCGGTGATCAAGTACGCGCGCAACAA
CCACGGGCCGGGCGGCTTTGTGCGCCTCACGTTGGTGCCGACCGACCGCG
TGATGAGCGCGGCGGCGCACGCCGCCAACGCGTTCCACTACAGCTGCTGG
GGCGCGCACGCGGTGATTGCGCGCGGCAACGAGCTGCGACGCGCACGGTT
CGGCTTCTCCATGGTGGGGTCGGACGGCGGCTTCCACCACTTTCCGAAGG
GCTACTACCAGGTGACGGTGACCATCCCCACCGTGGTGCCGGACGGCGAC
TACGTGCTGGGCTGGGCGTGGTACGGCGGCACGGGCGGGCAGCTGCGCAG
CGCCACGCGCCAGCAGTACCCGAAGAGCACGGGCTACTTTGGCGACTACT
ACTCGTGCGCGTTTGTGCGCATCAAGGGCGGCCGCAGCACGCGCACGTAC
CGGCCGCGCTTCGTCAACAACATGCGCCGCTTCTCCTCCGTGGGCTGCAT
GGCGTCGGCCGACCGCCCGGGCGTGTGCGCGAGCGAGCCGTGCATCAAGA
AGGCGTGGTTCcggccgccgcgcccgttcgcggcggggcgccgcccggcg
ccgctcacgcgcgcgCACTTTGAACAAGGCACCGGCAGCAGCACCGCCAC
GGCGACGCGGCAGCCGCCGTACTGGCGGCGCGTGCTGGCGGCATGCCACT
gcgtgcgcagcggcgccaagtgcgcgcgcgcgctggtgcgccgcagcaac
tggcgctgccgcgcgcgcacgcaccccgcgcAACAGCCGCCAGAGTGTCG
ACGGCTGTGCTGCCAAATGTGCCGCGTGCACCGGCATGTGCGCGACGTTT
GTTGGGCGCGCAACGTGCGCGCCACCTGCGGCTTCTGAGCGCCGCCGCGC
TGTACATAATACATATATAaacaccaccaccaacaacaacaacaacctgc
tgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctg
ctgcCTGCGCCAGATCTGCCGCTCACGCGAGCAAGCACCGCCACAGTGAG
ACGCGGACACATCATACCCTTGATGTACCGACGGTACCAACGGTACTTGG
TCTTGTGAGCCACAGTCTCACTTGTGACTGACTACACGTCGCCAATTGAA
TCAAAACTCGTCGCAATAATACTATAAGTTACTGTAAACAATTTTTGAAT
GCATTCGCTCGTATTCAATTATGTAATTTGTGAAAACAAGCCTTGCATAT
GCGCCTTGGTCCACCAATGGTGAACCCCCCCCCCGTTTCATATACTTCAA
ACTTTCGATCCATTCAGGCTGTTCCCCTCATCCGCCAGCAACAGCAAGAT
GAGACTAACAACCCAATAAGGAACCCGTTAAGTAAAGTTTGAATTGTTTT
GATATCTCGACAAACAGACAACACACAATGCCCTTGACGCTCATCCTCTT
TTTCTTCGGTACAGTTCCACTTTTCATACATGTTTTGCATGTCACAGAGC
TTCATGTCGCGGTCATCAAACAGTAGCAGCGTTCATTTGTTCCTTCATAT
TAGAAAAGGTTGCAATGCTTCATTTTCAAGCTTCATTTTCAAGCGCACAC
ACAACGACGTAGCCACGGCGAGCCACAAAAGTTTCCGAAACGGGTCATAC
TTAATTCACACATTGTTCAGCTCTCGTTTGCGTCCGCCATGAAGCACACG
CCAGGAAACGTTTCCCCGCCATCGACTCCCAAACCAGAAAGAGAGTCCTC
ATGCGCCTGTCTCTCGCGTTGGAGACGTATTTACAACAAAGCTGCTGTGC
TTTTGCATAAATACAGCCCCAACAGCGGCTCGAATCCCTTCCTCCCCTCG
GTAACACCACCTCCTTCGGCATTTCAGCTTCTGATCGTTTCGCTCCTTCT
TTCTTTCATCAGCATGACTTCTTCCGCCCCCACCCCTCCTCCGACTCCAC
GCCGCGTCGTCGAATATGAGCTTGAAAACAATGAGCGCCTTCTACGTCGT
TTGCAAATCAGCGAACGCCGCCAAAGCCACCCCAGCCGTGCTGAGCAGAA
AATGGAAGGCGTGTCTGCGTCGCAAGGAAGGCCGCCAAAGTGCAACTCAA
CGCGAAAGACTGCCGCCGAGCCACGGCGAGGCATTAAAAAACCCACTTAC
CGCTCAGCTACCGCCGCAGCCGCCCGCGCGGCGACCAGTCGCAGGAACAC
CAATGCTAAGAAAACGCGTGCTGTCGACCGCAGCTCCAAATGTTCACAGC
CTTCACAGCGGTCAGCGCAACGCAATAAGACGCCATCTGGGACCGGAACG
TTCCGACCAGCCACCAATCGTACGAACCATGCTGACATTCAGTCGCAAGT
GCACCAGCACACACATCGAGACCCTGCGGGGGCGCACTGGCGCGGCAGAG
CGGCAAAGCGGACCTACCTCGTACGCAGAAGCTCGCAGCCGCGTGTGAGT
CACCCGTACAGGAAGATGGAGCGAGGCGAGCTATACTGGAATACGACGCC
ACAGGGCGGCATGGCCGTGTTGCCCGCGTCAGCTGTCGAGATAGGCGAGG
CTGGGCGTGCCAGCTTCGGCCAAACAACAGCGACTTTTCCTTTGGGGCCG
TCAGTAGCGTATGTGGCGAATGCTATGTATTACGACGTCTTTGCAAGCGT
GCCACTGGCGGGGGGCGACCATGGGGGGCGGGCGCAGGGAACGGTGGTGC
TACCGTCTGGCTTGGTGGTGCACGGCGGCTCCAGTTGCGGTTGGCGATAA

Coding sequence (CDS) from alignment at tig00000866_pilon:441025..443924+

>Ggra7625.t1 ID=Ggra7625.t1|Name=Ggra7625.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1512bp|location=Sequence derived from alignment at tig00000866_pilon:441025..443924+ (Gracilaria gracilis GNS1m male)
atgacgcagccgcagtccacgtcgccgcgcgtgtgccgcgTGGGCGGGCA
GCCGCAGTTTGGCGAGCGCAACTGCCGCGGCCCGTGCGACTTGGTGCCGG
TACGCGCGCGGCCGCGCTGGGCAAACTTCTGGTCGCCGCGCCACCCGGCG
GCCACGTACCGGCGCGGGCAGCGCGCGGTGATCAAGTACGCGCGCAACAA
CCACGGGCCGGGCGGCTTTGTGCGCCTCACGTTGGTGCCGACCGACCGCG
TGATGAGCGCGGCGGCGCACGCCGCCAACGCGTTCCACTACAGCTGCTGG
GGCGCGCACGCGGTGATTGCGCGCGGCAACGAGCTGCGACGCGCACGGTT
CGGCTTCTCCATGGTGGGGTCGGACGGCGGCTTCCACCACTTTCCGAAGG
GCTACTACCAGGTGACGGTGACCATCCCCACCGTGGTGCCGGACGGCGAC
TACGTGCTGGGCTGGGCGTGGTACGGCGGCACGGGCGGGCAGCTGCGCAG
CGCCACGCGCCAGCAGTACCCGAAGAGCACGGGCTACTTTGGCGACTACT
ACTCGTGCGCGTTTGTGCGCATCAAGGGCGGCCGCAGCACGCGCACGTAC
CGGCCGCGCTTCGTCAACAACATGCGCCGCTTCTCCTCCGTGGGCTGCAT
GGCGTCGGCCGACCGCCCGGGCGTCATGACTTCTTCCGCCCCCACCCCTC
CTCCGACTCCACGCCGCGTCGTCGAATATGAGCTTGAAAACAATGAGCGC
CTTCTACGTCGTTTGCAAATCAGCGAACGCCGCCAAAGCCACCCCAGCCG
TGCTGAGCAGAAAATGGAAGGCGTGTCTGCGTCGCAAGGAAGGCCGCCAA
AGTGCAACTCAACGCGAAAGACTGCCGCCGAGCCACGGCGAGGCATTAAA
AAACCCACTTACCGCTCAGCTACCGCCGCAGCCGCCCGCGCGGCGACCAG
TCGCAGGAACACCAATGCTAAGAAAACGCGTGCTGTCGACCGCAGCTCCA
AATGTTCACAGCCTTCACAGCGGTCAGCGCAACGCAATAAGACGCCATCT
GGGACCGGAACGTTCCGACCAGCCACCAATCGTACGAACCATGCTGACAT
TCAGTCGCAAGTGCACCAGCACACACATCGAGACCCTGCGGGGGCGCACT
GGCGCGGCAGAGCGGCAAAGCGGACCTACCTCGTACGCAGAAGCTCGCAG
CCGCGTGTGAGTCACCCGTACAGGAAGATGGAGCGAGGCGAGCTATACTG
GAATACGACGCCACAGGGCGGCATGGCCGTGTTGCCCGCGTCAGCTGTCG
AGATAGGCGAGGCTGGGCGTGCCAGCTTCGGCCAAACAACAGCGACTTTT
CCTTTGGGGCCGTCAGTAGCGTATGTGGCGAATGCTATGTATTACGACGT
CTTTGCAAGCGTGCCACTGGCGGGGGGCGACCATGGGGGGCGGGCGCAGG
GAACGGTGGTGCTACCGTCTGGCTTGGTGGTGCACGGCGGCTCCAGTTGC
GGTTGGCGATAA