Ggra7617.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7617.t1
Unique NameGgra7617.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length99
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000866_piloncontigtig00000866_pilon:325754..326050 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707243.1
Preferred nameDAD1
PFAMsDAD
Max annot lvl2759|Eukaryota
KEGG koko:K12668
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ModuleM00072
GOsGO:0001701,GO:0001824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0007275,GO:0007584,GO:0008150,GO:0008152,GO:0008250,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009605,GO:0009790,GO:0009792,GO:0009987,GO:0009991,GO:0010941,GO:0012505,GO:0016020,GO:0016021,GO:0018193,GO:0018196,GO:0018279,GO:0019538,GO:0031224,GO:0031667,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0034645,GO:0036211,GO:0042175,GO:0042221,GO:0042493,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0060548,GO:0065007,GO:0070085,GO:0071704,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990234
Evalue6.06e-32
EggNOG OGsKOG1746@1|root,KOG1746@2759|Eukaryota
Descriptiondolichyl-diphosphooligosaccharide-protein glycotransferase activity
COG categoryI
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7617Ggra7617Gracilaria gracilis GNS1m malegenetig00000866_pilon 325754..326050 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7617.t1.stop1Ggra7617.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000866_pilon 325754..325756 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7617.t1.CDS1Ggra7617.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000866_pilon 325754..326050 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7617.t1.exon1Ggra7617.t1.exon1Gracilaria gracilis GNS1m maleexontig00000866_pilon 325754..326050 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7617.t1.start1Ggra7617.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000866_pilon 326048..326050 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7617.t1Ggra7617.t1Gracilaria gracilis GNS1m malepolypeptidetig00000866_pilon 325754..326050 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7617.t1 ID=Ggra7617.t1|Name=Ggra7617.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=99bp
MPRELKVMDAFLAHVLAVGVAQLLYMIAAGSFPYNSFLAGFLSSVGVFVL
TVSLRMQLDDNNRRNAHNRWRTLSKRRAYVDWLFCNLILHMAVLNFVG*
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spliced messenger RNA

>Ggra7617.t1 ID=Ggra7617.t1|Name=Ggra7617.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=297bp|location=Sequence derived from alignment at tig00000866_pilon:325754..326050- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCGCGAGCTCAAGGTGATGGACGCGTTCCTAGCGCACGTGCTGGC
GGTGGGCGTGGCGCAGCTGCTATACATGATCGCAGCGGGCTCGTTCCCAT
ACAACTCGTTCCTGGCGGGCTTTCTGTCCAGCGTGGGCGTGTTCGTGCTC
ACCGTGTCGCTGCGCATGCAGCTGGACGACAACAACCGGCGCAACGCGCA
CAACCGCTGGCGCACGCTGTCCAAGCGGCGCGCGTACGTGGACTGGCTGT
TCTGCAACCTCATCCTTCACATGGCCGTGCTCAACTTCGTGGGCTAG
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protein sequence of Ggra7617.t1

>Ggra7617.t1 ID=Ggra7617.t1|Name=Ggra7617.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=99bp
MPRELKVMDAFLAHVLAVGVAQLLYMIAAGSFPYNSFLAGFLSSVGVFVL
TVSLRMQLDDNNRRNAHNRWRTLSKRRAYVDWLFCNLILHMAVLNFVG*
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mRNA from alignment at tig00000866_pilon:325754..326050-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7617.t1 ID=Ggra7617.t1|Name=Ggra7617.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=297bp|location=Sequence derived from alignment at tig00000866_pilon:325754..326050- (Gracilaria gracilis GNS1m male)
ATGCCGCGCGAGCTCAAGGTGATGGACGCGTTCCTAGCGCACGTGCTGGC
GGTGGGCGTGGCGCAGCTGCTATACATGATCGCAGCGGGCTCGTTCCCAT
ACAACTCGTTCCTGGCGGGCTTTCTGTCCAGCGTGGGCGTGTTCGTGCTC
ACCGTGTCGCTGCGCATGCAGCTGGACGACAACAACCGGCGCAACGCGCA
CAACCGCTGGCGCACGCTGTCCAAGCGGCGCGCGTACGTGGACTGGCTGT
TCTGCAACCTCATCCTTCACATGGCCGTGCTCAACTTCGTGGGCTAG
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Coding sequence (CDS) from alignment at tig00000866_pilon:325754..326050-

>Ggra7617.t1 ID=Ggra7617.t1|Name=Ggra7617.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=297bp|location=Sequence derived from alignment at tig00000866_pilon:325754..326050- (Gracilaria gracilis GNS1m male)
ATGCCGCGCGAGCTCAAGGTGATGGACGCGTTCCTAGCGCACGTGCTGGC
GGTGGGCGTGGCGCAGCTGCTATACATGATCGCAGCGGGCTCGTTCCCAT
ACAACTCGTTCCTGGCGGGCTTTCTGTCCAGCGTGGGCGTGTTCGTGCTC
ACCGTGTCGCTGCGCATGCAGCTGGACGACAACAACCGGCGCAACGCGCA
CAACCGCTGGCGCACGCTGTCCAAGCGGCGCGCGTACGTGGACTGGCTGT
TCTGCAACCTCATCCTTCACATGGCCGTGCTCAACTTCGTGGGCTAG
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