Ggra7587.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7587.t1
Unique NameGgra7587.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length441
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000866_piloncontigtig00000866_pilon:243554..244876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707089.1
PFAMsDUF563
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00059
KEGG koko:K18134
KEGG ReactionR09304,R09676
KEGG Pathwayko00514,map00514
Evalue2.95e-22
EggNOG OGs2E70N@1|root,2SDNQ@2759|Eukaryota
EC2.4.1.255
DescriptionProtein of unknown function (DUF563)
COG categoryS
CAZyGT41
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7587Ggra7587Gracilaria gracilis GNS1m malegenetig00000866_pilon 243554..244876 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7587.t1.start1Ggra7587.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000866_pilon 243554..243556 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7587.t1.CDS1Ggra7587.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000866_pilon 243554..244876 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7587.t1.exon1Ggra7587.t1.exon1Gracilaria gracilis GNS1m maleexontig00000866_pilon 243554..244876 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7587.t1.stop1Ggra7587.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000866_pilon 244874..244876 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7587.t1Ggra7587.t1Gracilaria gracilis GNS1m malepolypeptidetig00000866_pilon 243554..244876 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7587.t1 ID=Ggra7587.t1|Name=Ggra7587.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=441bp
MLVQSLVLFVTVAGSLAFDFCHTDPRLQVLQNDPSSTASCPSAIYVPELG
RNPNHALHDRLWAVSHYLKHCADNEASLILNDHVFYNLSLCGEEDESPDP
KRPTWGICVAFILSQWHKLLLYFSKSHIWPEKMAQTPGSCYSRHIWIGVQ
PTPAETNDLGITVSHFRKLSWFGRDCEQQKPCLSGMGPLPESLQRSALGN
IASAAYNFLEIEFAPQESVNILVYDRSDTIRRQWNGASEVFDKLRSDKRV
NVQLLHRMPISFARQVKLFTWANIVVAPHGGAMANTIFMQTGSDILEVRR
NCEADKRFPNFMPWDWTGWHAHLLGLNLMYIRCTMQKEKTKRTSSLKDEE
PSQFTVNVTEVLRVLEGCIRRQIHRRNAAHRNQLLNKKLPGEEDEEIFDL
VHREFQRITIVEFSVLVSIAAMVIIGSRFFSRRSHRMRRT*
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spliced messenger RNA

>Ggra7587.t1 ID=Ggra7587.t1|Name=Ggra7587.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1323bp|location=Sequence derived from alignment at tig00000866_pilon:243554..244876+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGTGCAGAGCCTAGTTCTCTTCGTCACTGTTGCAGGATCCCTCGC
GTTTGACTTCTGCCACACCGATCCTCGTCTTCAAGTACTCCAGAATGACC
CGTCGTCAACAGCCTCATGTCCATCGGCAATATATGTTCCGGAACTGGGC
CGAAATCCAAACCACGCCCTGCACGACCGATTGTGGGCTGTGTCGCATTA
CTTAAAACATTGCGCTGACAATGAGGCAAGTCTGATATTGAACGACCACG
TCTTCTACAACCTCAGCTTGTGTGGAGAGGAAGACGAATCCCCTGATCCG
AAGCGCCCAACATGGGGGATTTGTGTGGCTTTCATCCTTTCTCAATGGCA
CAAACTGTTGCTGTACTTCTCCAAGAGTCATATCTGGCCGGAGAAGATGG
CCCAGACGCCCGGCTCCTGTTATTCGCGGCATATTTGGATTGGAGTACAA
CCAACACCGGCTGAAACAAACGACTTAGGGATTACAGTGTCCCACTTTCG
CAAGCTCAGCTGGTTTGGACGGGACTGCGAACAGCAGAAACCTTGTCTGA
GCGGTATGGGTCCACTACCGGAGTCTCTGCAGAGATCCGCTTTGGGTAAC
ATTGCGTCAGCTGCGTATAACTTTCTCGAGATTGAATTCGCCCCACAAGA
ATCTGTTAATATTCTTGTTTATGATCGTAGTGACACAATCCGAAGGCAGT
GGAATGGTGCCAGTGAAGTTTTTGACAAACTAAGATCTGATAAAAGGGTC
AACGTACAACTTTTACATCGAATGCCAATCAGCTTCGCGCGACAAGTGAA
ACTGTTCACTTGGGCTAATATAGTTGTGGCGCCCCACGGAGGGGCAATGG
CCAACACGATATTCATGCAAACTGGAAGCGACATTCTCGAAGTACGGCGA
AACTGTGAGGCGGACAAACGGTTTCCAAACTTCATGCCTTGGGATTGGAC
CGGGTGGCACGCTCACCTGCTCGGCCTTAATCTCATGTATATCAGATGCA
CGATGCAGAAGGAGAAAACGAAAAGAACAAGCAGTTTAAAGGACGAGGAA
CCGTCACAATTCACAGTTAACGTCACTGAGGTGCTAAGGGTGCTTGAAGG
ATGTATTCGACGACAAATTCACCGCAGGAATGCAGCACACAGAAATCAGT
TGTTGAACAAGAAATTACCAGGTGAAGAAGACGAAGAAATCTTCGACCTG
GTCCATAGGGAGTTTCAGAGGATAACGATAGTTGAGTTCTCGGTGCTTGT
CTCGATTGCAGCCATGGTTATTATTGGTTCTAGATTTTTCTCCAGAAGAA
GCCACAGGATGAGAAGAACATGA
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protein sequence of Ggra7587.t1

>Ggra7587.t1 ID=Ggra7587.t1|Name=Ggra7587.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=441bp
MLVQSLVLFVTVAGSLAFDFCHTDPRLQVLQNDPSSTASCPSAIYVPELG
RNPNHALHDRLWAVSHYLKHCADNEASLILNDHVFYNLSLCGEEDESPDP
KRPTWGICVAFILSQWHKLLLYFSKSHIWPEKMAQTPGSCYSRHIWIGVQ
PTPAETNDLGITVSHFRKLSWFGRDCEQQKPCLSGMGPLPESLQRSALGN
IASAAYNFLEIEFAPQESVNILVYDRSDTIRRQWNGASEVFDKLRSDKRV
NVQLLHRMPISFARQVKLFTWANIVVAPHGGAMANTIFMQTGSDILEVRR
NCEADKRFPNFMPWDWTGWHAHLLGLNLMYIRCTMQKEKTKRTSSLKDEE
PSQFTVNVTEVLRVLEGCIRRQIHRRNAAHRNQLLNKKLPGEEDEEIFDL
VHREFQRITIVEFSVLVSIAAMVIIGSRFFSRRSHRMRRT*
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mRNA from alignment at tig00000866_pilon:243554..244876+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7587.t1 ID=Ggra7587.t1|Name=Ggra7587.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1323bp|location=Sequence derived from alignment at tig00000866_pilon:243554..244876+ (Gracilaria gracilis GNS1m male)
ATGCTGGTGCAGAGCCTAGTTCTCTTCGTCACTGTTGCAGGATCCCTCGC
GTTTGACTTCTGCCACACCGATCCTCGTCTTCAAGTACTCCAGAATGACC
CGTCGTCAACAGCCTCATGTCCATCGGCAATATATGTTCCGGAACTGGGC
CGAAATCCAAACCACGCCCTGCACGACCGATTGTGGGCTGTGTCGCATTA
CTTAAAACATTGCGCTGACAATGAGGCAAGTCTGATATTGAACGACCACG
TCTTCTACAACCTCAGCTTGTGTGGAGAGGAAGACGAATCCCCTGATCCG
AAGCGCCCAACATGGGGGATTTGTGTGGCTTTCATCCTTTCTCAATGGCA
CAAACTGTTGCTGTACTTCTCCAAGAGTCATATCTGGCCGGAGAAGATGG
CCCAGACGCCCGGCTCCTGTTATTCGCGGCATATTTGGATTGGAGTACAA
CCAACACCGGCTGAAACAAACGACTTAGGGATTACAGTGTCCCACTTTCG
CAAGCTCAGCTGGTTTGGACGGGACTGCGAACAGCAGAAACCTTGTCTGA
GCGGTATGGGTCCACTACCGGAGTCTCTGCAGAGATCCGCTTTGGGTAAC
ATTGCGTCAGCTGCGTATAACTTTCTCGAGATTGAATTCGCCCCACAAGA
ATCTGTTAATATTCTTGTTTATGATCGTAGTGACACAATCCGAAGGCAGT
GGAATGGTGCCAGTGAAGTTTTTGACAAACTAAGATCTGATAAAAGGGTC
AACGTACAACTTTTACATCGAATGCCAATCAGCTTCGCGCGACAAGTGAA
ACTGTTCACTTGGGCTAATATAGTTGTGGCGCCCCACGGAGGGGCAATGG
CCAACACGATATTCATGCAAACTGGAAGCGACATTCTCGAAGTACGGCGA
AACTGTGAGGCGGACAAACGGTTTCCAAACTTCATGCCTTGGGATTGGAC
CGGGTGGCACGCTCACCTGCTCGGCCTTAATCTCATGTATATCAGATGCA
CGATGCAGAAGGAGAAAACGAAAAGAACAAGCAGTTTAAAGGACGAGGAA
CCGTCACAATTCACAGTTAACGTCACTGAGGTGCTAAGGGTGCTTGAAGG
ATGTATTCGACGACAAATTCACCGCAGGAATGCAGCACACAGAAATCAGT
TGTTGAACAAGAAATTACCAGGTGAAGAAGACGAAGAAATCTTCGACCTG
GTCCATAGGGAGTTTCAGAGGATAACGATAGTTGAGTTCTCGGTGCTTGT
CTCGATTGCAGCCATGGTTATTATTGGTTCTAGATTTTTCTCCAGAAGAA
GCCACAGGATGAGAAGAACATGA
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Coding sequence (CDS) from alignment at tig00000866_pilon:243554..244876+

>Ggra7587.t1 ID=Ggra7587.t1|Name=Ggra7587.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1323bp|location=Sequence derived from alignment at tig00000866_pilon:243554..244876+ (Gracilaria gracilis GNS1m male)
ATGCTGGTGCAGAGCCTAGTTCTCTTCGTCACTGTTGCAGGATCCCTCGC
GTTTGACTTCTGCCACACCGATCCTCGTCTTCAAGTACTCCAGAATGACC
CGTCGTCAACAGCCTCATGTCCATCGGCAATATATGTTCCGGAACTGGGC
CGAAATCCAAACCACGCCCTGCACGACCGATTGTGGGCTGTGTCGCATTA
CTTAAAACATTGCGCTGACAATGAGGCAAGTCTGATATTGAACGACCACG
TCTTCTACAACCTCAGCTTGTGTGGAGAGGAAGACGAATCCCCTGATCCG
AAGCGCCCAACATGGGGGATTTGTGTGGCTTTCATCCTTTCTCAATGGCA
CAAACTGTTGCTGTACTTCTCCAAGAGTCATATCTGGCCGGAGAAGATGG
CCCAGACGCCCGGCTCCTGTTATTCGCGGCATATTTGGATTGGAGTACAA
CCAACACCGGCTGAAACAAACGACTTAGGGATTACAGTGTCCCACTTTCG
CAAGCTCAGCTGGTTTGGACGGGACTGCGAACAGCAGAAACCTTGTCTGA
GCGGTATGGGTCCACTACCGGAGTCTCTGCAGAGATCCGCTTTGGGTAAC
ATTGCGTCAGCTGCGTATAACTTTCTCGAGATTGAATTCGCCCCACAAGA
ATCTGTTAATATTCTTGTTTATGATCGTAGTGACACAATCCGAAGGCAGT
GGAATGGTGCCAGTGAAGTTTTTGACAAACTAAGATCTGATAAAAGGGTC
AACGTACAACTTTTACATCGAATGCCAATCAGCTTCGCGCGACAAGTGAA
ACTGTTCACTTGGGCTAATATAGTTGTGGCGCCCCACGGAGGGGCAATGG
CCAACACGATATTCATGCAAACTGGAAGCGACATTCTCGAAGTACGGCGA
AACTGTGAGGCGGACAAACGGTTTCCAAACTTCATGCCTTGGGATTGGAC
CGGGTGGCACGCTCACCTGCTCGGCCTTAATCTCATGTATATCAGATGCA
CGATGCAGAAGGAGAAAACGAAAAGAACAAGCAGTTTAAAGGACGAGGAA
CCGTCACAATTCACAGTTAACGTCACTGAGGTGCTAAGGGTGCTTGAAGG
ATGTATTCGACGACAAATTCACCGCAGGAATGCAGCACACAGAAATCAGT
TGTTGAACAAGAAATTACCAGGTGAAGAAGACGAAGAAATCTTCGACCTG
GTCCATAGGGAGTTTCAGAGGATAACGATAGTTGAGTTCTCGGTGCTTGT
CTCGATTGCAGCCATGGTTATTATTGGTTCTAGATTTTTCTCCAGAAGAA
GCCACAGGATGAGAAGAACATGA
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