Ggra7582.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7582.t1
Unique NameGgra7582.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length373
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000866_piloncontigtig00000866_pilon:113229..114347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705728.1
Preferred nameVTE2-2
PFAMsUbiA
Max annot lvl2759|Eukaryota
KEGG rclassRC01840
KEGG koko:K12501
KEGG ReactionR08782
KEGG Pathwayko00130,map00130
Evalue3.71e-112
EggNOG OGsCOG0382@1|root,2QUHT@2759|Eukaryota
EC2.5.1.117
Descriptionhomogentisate solanyltransferase activity
COG categoryH
BRITEko00000,ko00001,ko01000,ko01006
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7582Ggra7582Gracilaria gracilis GNS1m malegenetig00000866_pilon 113229..114347 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7582.t1.stop1Ggra7582.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000866_pilon 113229..113231 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7582.t1.CDS1Ggra7582.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000866_pilon 113229..114347 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7582.t1.exon1Ggra7582.t1.exon1Gracilaria gracilis GNS1m maleexontig00000866_pilon 113229..114347 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7582.t1.start1Ggra7582.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000866_pilon 114345..114347 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7582.t1Ggra7582.t1Gracilaria gracilis GNS1m malepolypeptidetig00000866_pilon 113229..114347 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7582.t1 ID=Ggra7582.t1|Name=Ggra7582.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=373bp
MGLGNITFALSTAPYHELRGAFVTNRSSVTHSFSRGRFGGRPRTRAPVKN
PPPSWIATRCSALAEANGAAEPPKVSMAEAIFKFTRPHTIRGTILAAFAG
CARALLESSAYVDWALFPRAIIGLLALLFGNAFIVGINQIYDIRLDKINK
PFLPLAAGEMRGSLAWGIVLSSAVLGLTLVRLFFSRLIFGLYAFGMSFGA
LYSVPPFRFKRYPPLAAITISCVRGFLLNFGVYHATKSALSVPFAWSPPI
TFLAVFMTVFACVIALSKDLPDIKGDKIEGIPTFASRIGPTKMVKLVVTV
LLMNYAGAIVTALVAPPGAFRRYVLLFGHLFLAGWLLRYQRKIKPSNQDS
IKAFYAFIWKLFYTEYMLFPFI*
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spliced messenger RNA

>Ggra7582.t1 ID=Ggra7582.t1|Name=Ggra7582.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1119bp|location=Sequence derived from alignment at tig00000866_pilon:113229..114347- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCTAGGTAACATTACATTCGCGCTTTCAACCGCACCATACCATGA
GTTGAGGGGTGCATTTGTTACGAACCGAAGCAGTGTAACGCATTCATTCA
GCAGAGGTCGATTTGGAGGAAGACCAAGAACAAGAGCTCCTGTGAAAAAC
CCTCCACCTTCATGGATTGCCACAAGGTGTTCCGCTCTGGCAGAAGCCAA
CGGGGCAGCCGAACCGCCGAAAGTTTCTATGGCCGAGGCCATTTTCAAGT
TCACCAGACCGCATACCATTCGCGGCACCATACTAGCAGCATTTGCAGGA
TGTGCGCGCGCTCTTTTGGAGTCATCAGCGTACGTTGACTGGGCACTTTT
TCCGCGGGCCATCATCGGATTGTTAGCGCTGTTGTTTGGAAATGCGTTTA
TCGTCGGCATCAATCAAATCTACGATATTCGTTTAGACAAGATTAACAAG
CCGTTTCTTCCTCTGGCTGCTGGGGAGATGAGGGGATCTCTTGCGTGGGG
CATTGTGTTATCGAGCGCTGTGCTTGGACTTACGCTTGTTCGATTGTTCT
TTTCTCGTCTTATCTTCGGCTTGTATGCGTTTGGCATGTCATTTGGAGCT
TTGTACTCAGTGCCACCGTTCAGATTTAAGCGCTATCCACCACTGGCAGC
CATAACTATCTCATGCGTGCGAGGGTTCCTGTTGAACTTTGGCGTATATC
ATGCGACGAAATCCGCTTTGAGTGTTCCGTTTGCTTGGTCTCCCCCAATC
ACATTTCTTGCCGTGTTCATGACCGTATTCGCATGCGTAATTGCACTTTC
GAAGGACTTACCGGACATCAAAGGGGACAAGATTGAGGGCATTCCAACCT
TTGCTTCTAGAATTGGCCCTACGAAGATGGTCAAGTTAGTCGTTACAGTT
TTGTTGATGAATTACGCTGGAGCAATTGTCACAGCTCTAGTCGCACCACC
GGGTGCATTCCGAAGATATGTATTACTCTTTGGACACCTCTTCTTAGCGG
GATGGCTTCTTCGATATCAGCGGAAGATCAAACCGAGTAACCAAGACTCG
ATCAAGGCGTTCTACGCCTTTATATGGAAACTGTTCTATACGGAGTACAT
GCTCTTCCCGTTCATATGA
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protein sequence of Ggra7582.t1

>Ggra7582.t1 ID=Ggra7582.t1|Name=Ggra7582.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=373bp
MGLGNITFALSTAPYHELRGAFVTNRSSVTHSFSRGRFGGRPRTRAPVKN
PPPSWIATRCSALAEANGAAEPPKVSMAEAIFKFTRPHTIRGTILAAFAG
CARALLESSAYVDWALFPRAIIGLLALLFGNAFIVGINQIYDIRLDKINK
PFLPLAAGEMRGSLAWGIVLSSAVLGLTLVRLFFSRLIFGLYAFGMSFGA
LYSVPPFRFKRYPPLAAITISCVRGFLLNFGVYHATKSALSVPFAWSPPI
TFLAVFMTVFACVIALSKDLPDIKGDKIEGIPTFASRIGPTKMVKLVVTV
LLMNYAGAIVTALVAPPGAFRRYVLLFGHLFLAGWLLRYQRKIKPSNQDS
IKAFYAFIWKLFYTEYMLFPFI*
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mRNA from alignment at tig00000866_pilon:113229..114347-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7582.t1 ID=Ggra7582.t1|Name=Ggra7582.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1119bp|location=Sequence derived from alignment at tig00000866_pilon:113229..114347- (Gracilaria gracilis GNS1m male)
ATGGGTCTAGGTAACATTACATTCGCGCTTTCAACCGCACCATACCATGA
GTTGAGGGGTGCATTTGTTACGAACCGAAGCAGTGTAACGCATTCATTCA
GCAGAGGTCGATTTGGAGGAAGACCAAGAACAAGAGCTCCTGTGAAAAAC
CCTCCACCTTCATGGATTGCCACAAGGTGTTCCGCTCTGGCAGAAGCCAA
CGGGGCAGCCGAACCGCCGAAAGTTTCTATGGCCGAGGCCATTTTCAAGT
TCACCAGACCGCATACCATTCGCGGCACCATACTAGCAGCATTTGCAGGA
TGTGCGCGCGCTCTTTTGGAGTCATCAGCGTACGTTGACTGGGCACTTTT
TCCGCGGGCCATCATCGGATTGTTAGCGCTGTTGTTTGGAAATGCGTTTA
TCGTCGGCATCAATCAAATCTACGATATTCGTTTAGACAAGATTAACAAG
CCGTTTCTTCCTCTGGCTGCTGGGGAGATGAGGGGATCTCTTGCGTGGGG
CATTGTGTTATCGAGCGCTGTGCTTGGACTTACGCTTGTTCGATTGTTCT
TTTCTCGTCTTATCTTCGGCTTGTATGCGTTTGGCATGTCATTTGGAGCT
TTGTACTCAGTGCCACCGTTCAGATTTAAGCGCTATCCACCACTGGCAGC
CATAACTATCTCATGCGTGCGAGGGTTCCTGTTGAACTTTGGCGTATATC
ATGCGACGAAATCCGCTTTGAGTGTTCCGTTTGCTTGGTCTCCCCCAATC
ACATTTCTTGCCGTGTTCATGACCGTATTCGCATGCGTAATTGCACTTTC
GAAGGACTTACCGGACATCAAAGGGGACAAGATTGAGGGCATTCCAACCT
TTGCTTCTAGAATTGGCCCTACGAAGATGGTCAAGTTAGTCGTTACAGTT
TTGTTGATGAATTACGCTGGAGCAATTGTCACAGCTCTAGTCGCACCACC
GGGTGCATTCCGAAGATATGTATTACTCTTTGGACACCTCTTCTTAGCGG
GATGGCTTCTTCGATATCAGCGGAAGATCAAACCGAGTAACCAAGACTCG
ATCAAGGCGTTCTACGCCTTTATATGGAAACTGTTCTATACGGAGTACAT
GCTCTTCCCGTTCATATGA
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Coding sequence (CDS) from alignment at tig00000866_pilon:113229..114347-

>Ggra7582.t1 ID=Ggra7582.t1|Name=Ggra7582.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1119bp|location=Sequence derived from alignment at tig00000866_pilon:113229..114347- (Gracilaria gracilis GNS1m male)
ATGGGTCTAGGTAACATTACATTCGCGCTTTCAACCGCACCATACCATGA
GTTGAGGGGTGCATTTGTTACGAACCGAAGCAGTGTAACGCATTCATTCA
GCAGAGGTCGATTTGGAGGAAGACCAAGAACAAGAGCTCCTGTGAAAAAC
CCTCCACCTTCATGGATTGCCACAAGGTGTTCCGCTCTGGCAGAAGCCAA
CGGGGCAGCCGAACCGCCGAAAGTTTCTATGGCCGAGGCCATTTTCAAGT
TCACCAGACCGCATACCATTCGCGGCACCATACTAGCAGCATTTGCAGGA
TGTGCGCGCGCTCTTTTGGAGTCATCAGCGTACGTTGACTGGGCACTTTT
TCCGCGGGCCATCATCGGATTGTTAGCGCTGTTGTTTGGAAATGCGTTTA
TCGTCGGCATCAATCAAATCTACGATATTCGTTTAGACAAGATTAACAAG
CCGTTTCTTCCTCTGGCTGCTGGGGAGATGAGGGGATCTCTTGCGTGGGG
CATTGTGTTATCGAGCGCTGTGCTTGGACTTACGCTTGTTCGATTGTTCT
TTTCTCGTCTTATCTTCGGCTTGTATGCGTTTGGCATGTCATTTGGAGCT
TTGTACTCAGTGCCACCGTTCAGATTTAAGCGCTATCCACCACTGGCAGC
CATAACTATCTCATGCGTGCGAGGGTTCCTGTTGAACTTTGGCGTATATC
ATGCGACGAAATCCGCTTTGAGTGTTCCGTTTGCTTGGTCTCCCCCAATC
ACATTTCTTGCCGTGTTCATGACCGTATTCGCATGCGTAATTGCACTTTC
GAAGGACTTACCGGACATCAAAGGGGACAAGATTGAGGGCATTCCAACCT
TTGCTTCTAGAATTGGCCCTACGAAGATGGTCAAGTTAGTCGTTACAGTT
TTGTTGATGAATTACGCTGGAGCAATTGTCACAGCTCTAGTCGCACCACC
GGGTGCATTCCGAAGATATGTATTACTCTTTGGACACCTCTTCTTAGCGG
GATGGCTTCTTCGATATCAGCGGAAGATCAAACCGAGTAACCAAGACTCG
ATCAAGGCGTTCTACGCCTTTATATGGAAACTGTTCTATACGGAGTACAT
GCTCTTCCCGTTCATATGA
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