Ggra7580.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7580.t1
Unique Name	Ggra7580.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	462

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000866_pilon	contig	tig00000866_pilon:108307..109692 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7580	Ggra7580	Gracilaria gracilis GNS1m male	gene	tig00000866_pilon 108307..109692 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7580.t1.start1	Ggra7580.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000866_pilon 108307..108309 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7580.t1.CDS1	Ggra7580.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000866_pilon 108307..109692 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7580.t1.exon1	Ggra7580.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000866_pilon 108307..109692 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7580.t1.stop1	Ggra7580.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000866_pilon 109690..109692 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7580.t1	Ggra7580.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000866_pilon 108307..109692 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000866_pilon:108307..109692+
coding sequence from alignment at tig00000866_pilon:108307..109692+

mRNA sequence

>Ggra7580.t1 ID=Ggra7580.t1|Name=Ggra7580.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=462bp
MLRSDHLFEDDRAVPLCTLTQSTPSFKGARGAVSTTFTAPCSASPMENAQ
EHLVRDDDGSWRGWLGGKVANAEAAIASVFSNDVEADAVPPPDRPEQRPL
QNDDEQFLAPQMSRTTSGLSFSEAWCAVRRAAVAAIGGLEQADGVALTPD
SSETQESQEQPSPEQRGAAVKLDSRPVLGDCKQNDPNVPSAPISAHFSMS
DCSEMEQLGKDVQFDTYDEDFHVVEHNNASALYDKQLECAVHRDKQSVEK
PEPAISEEHLAQLKSRFDIMFEQNGGAECVARVKEIGDVQLMAMRDSSKM
DSRVLTELCEAKHILDKALSSLESAARNRTDETGEAASAATSVIEQTKEN
CNREHNLVDDCSRLLAVFASNVCSNVLRCVEERDVHSWSDRVKRLVDLAS
VGVGQLRTICFSFAAELAPHERCAHALKDVSVRHVLQCVALAVAAFHVEA
AERAVQCSTEF*

spliced messenger RNA

>Ggra7580.t1 ID=Ggra7580.t1|Name=Ggra7580.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1386bp|location=Sequence derived from alignment at tig00000866_pilon:108307..109692+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTACGGTCGGACCACCTCTTCGAAGACGATCGAGCCGTTCCGCTTTG
CACGCTGACACAATCGACGCCTTCGTTCAAAGGCGCGCGCGGCGCAGTCA
GCACCACCTTCACCGCGCCATGCAGCGCTTCACCCATGGAGAATGCTCAG
GAGCATCTGGTGCGGGACGATGACGGGAGCTGGCGCGGCTGGCTTGGCGG
AAAGGTTGCTAATGCTGAAGCGGCAATAGCGTCGGTCTTCAGCAATGACG
TTGAGGCTGACGCCGTGCCTCCGCCAGACCGCCCTGAACAACGACCGTTG
CAGAATGACGACGAGCAGTTCCTTGCGCCGCAGATGTCGCGTACCACTTC
GGGTTTGTCGTTCTCGGAAGCGTGGTGTGCGGTGCGTCGTGCCGCTGTTG
CTGCTATCGGAGGGCTTGAACAGGCTGATGGTGTTGCTTTGACGCCCGAT
TCTAGCGAGACACAGGAAAGCCAGGAGCAGCCTAGTCCCGAACAGCGCGG
CGCCGCGGTTAAGTTGGACAGCCGGCCAGTTTTAGGAGACTGCAAGCAGA
ACGATCCAAATGTACCGTCGGCGCCCATATCAGCTCATTTCTCCATGTCA
GACTGCAGTGAAATGGAACAACTAGGAAAGGATGTACAATTCGATACGTA
TGACGAAGATTTCCATGTGGTGGAGCACAATAATGCCTCTGCTTTGTATG
ACAAGCAGCTCGAGTGTGCAGTGCATCGTGATAAGCAATCTGTAGAGAAA
CCAGAACCCGCCATAAGTGAAGAGCACCTCGCACAACTAAAGAGCCGCTT
CGACATCATGTTTGAGCAGAATGGTGGCGCTGAGTGTGTGGCGCGCGTCA
AGGAGATTGGCGATGTGCAACTCATGGCAATGCGAGATTCCTCCAAAATG
GACTCCCGCGTACTTACAGAATTGTGTGAAGCTAAGCATATCCTAGACAA
GGCCCTCAGCAGTCTCGAGTCTGCAGCCAGAAATCGCACGGATGAAACTG
GTGAAGCTGCCTCGGCTGCTACAAGCGTCATTGAACAGACCAAGGAAAAC
TGCAATCGTGAGCATAATCTTGTAGATGACTGCAGTCGTCTCCTTGCTGT
GTTTGCTAGCAATGTATGTTCGAATGTACTGCGGTGTGTTGAGGAACGTG
ATGTTCATAGTTGGAGTGATCGTGTGAAACGTCTTGTCGATCTTGCGTCT
GTGGGCGTTGGACAGTTGCGTACTATTTGCTTTTCATTTGCTGCTGAGCT
TGCTCCTCATGAAAGATGCGCGCACGCTCTCAAGGACGTTTCTGTCAGGC
ATGTTCTGCAATGTGTTGCGCTTGCCGTGGCTGCATTTCATGTTGAGGCA
GCAGAGCGTGCTGTGCAATGTAGTACAGAATTCTAA

protein sequence of Ggra7580.t1

>Ggra7580.t1 ID=Ggra7580.t1|Name=Ggra7580.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=462bp
MLRSDHLFEDDRAVPLCTLTQSTPSFKGARGAVSTTFTAPCSASPMENAQ
EHLVRDDDGSWRGWLGGKVANAEAAIASVFSNDVEADAVPPPDRPEQRPL
QNDDEQFLAPQMSRTTSGLSFSEAWCAVRRAAVAAIGGLEQADGVALTPD
SSETQESQEQPSPEQRGAAVKLDSRPVLGDCKQNDPNVPSAPISAHFSMS
DCSEMEQLGKDVQFDTYDEDFHVVEHNNASALYDKQLECAVHRDKQSVEK
PEPAISEEHLAQLKSRFDIMFEQNGGAECVARVKEIGDVQLMAMRDSSKM
DSRVLTELCEAKHILDKALSSLESAARNRTDETGEAASAATSVIEQTKEN
CNREHNLVDDCSRLLAVFASNVCSNVLRCVEERDVHSWSDRVKRLVDLAS
VGVGQLRTICFSFAAELAPHERCAHALKDVSVRHVLQCVALAVAAFHVEA
AERAVQCSTEF*

mRNA from alignment at tig00000866_pilon:108307..109692+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7580.t1 ID=Ggra7580.t1|Name=Ggra7580.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1386bp|location=Sequence derived from alignment at tig00000866_pilon:108307..109692+ (Gracilaria gracilis GNS1m male)
ATGCTACGGTCGGACCACCTCTTCGAAGACGATCGAGCCGTTCCGCTTTG
CACGCTGACACAATCGACGCCTTCGTTCAAAGGCGCGCGCGGCGCAGTCA
GCACCACCTTCACCGCGCCATGCAGCGCTTCACCCATGGAGAATGCTCAG
GAGCATCTGGTGCGGGACGATGACGGGAGCTGGCGCGGCTGGCTTGGCGG
AAAGGTTGCTAATGCTGAAGCGGCAATAGCGTCGGTCTTCAGCAATGACG
TTGAGGCTGACGCCGTGCCTCCGCCAGACCGCCCTGAACAACGACCGTTG
CAGAATGACGACGAGCAGTTCCTTGCGCCGCAGATGTCGCGTACCACTTC
GGGTTTGTCGTTCTCGGAAGCGTGGTGTGCGGTGCGTCGTGCCGCTGTTG
CTGCTATCGGAGGGCTTGAACAGGCTGATGGTGTTGCTTTGACGCCCGAT
TCTAGCGAGACACAGGAAAGCCAGGAGCAGCCTAGTCCCGAACAGCGCGG
CGCCGCGGTTAAGTTGGACAGCCGGCCAGTTTTAGGAGACTGCAAGCAGA
ACGATCCAAATGTACCGTCGGCGCCCATATCAGCTCATTTCTCCATGTCA
GACTGCAGTGAAATGGAACAACTAGGAAAGGATGTACAATTCGATACGTA
TGACGAAGATTTCCATGTGGTGGAGCACAATAATGCCTCTGCTTTGTATG
ACAAGCAGCTCGAGTGTGCAGTGCATCGTGATAAGCAATCTGTAGAGAAA
CCAGAACCCGCCATAAGTGAAGAGCACCTCGCACAACTAAAGAGCCGCTT
CGACATCATGTTTGAGCAGAATGGTGGCGCTGAGTGTGTGGCGCGCGTCA
AGGAGATTGGCGATGTGCAACTCATGGCAATGCGAGATTCCTCCAAAATG
GACTCCCGCGTACTTACAGAATTGTGTGAAGCTAAGCATATCCTAGACAA
GGCCCTCAGCAGTCTCGAGTCTGCAGCCAGAAATCGCACGGATGAAACTG
GTGAAGCTGCCTCGGCTGCTACAAGCGTCATTGAACAGACCAAGGAAAAC
TGCAATCGTGAGCATAATCTTGTAGATGACTGCAGTCGTCTCCTTGCTGT
GTTTGCTAGCAATGTATGTTCGAATGTACTGCGGTGTGTTGAGGAACGTG
ATGTTCATAGTTGGAGTGATCGTGTGAAACGTCTTGTCGATCTTGCGTCT
GTGGGCGTTGGACAGTTGCGTACTATTTGCTTTTCATTTGCTGCTGAGCT
TGCTCCTCATGAAAGATGCGCGCACGCTCTCAAGGACGTTTCTGTCAGGC
ATGTTCTGCAATGTGTTGCGCTTGCCGTGGCTGCATTTCATGTTGAGGCA
GCAGAGCGTGCTGTGCAATGTAGTACAGAATTCTAA

Coding sequence (CDS) from alignment at tig00000866_pilon:108307..109692+

>Ggra7580.t1 ID=Ggra7580.t1|Name=Ggra7580.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1386bp|location=Sequence derived from alignment at tig00000866_pilon:108307..109692+ (Gracilaria gracilis GNS1m male)
ATGCTACGGTCGGACCACCTCTTCGAAGACGATCGAGCCGTTCCGCTTTG
CACGCTGACACAATCGACGCCTTCGTTCAAAGGCGCGCGCGGCGCAGTCA
GCACCACCTTCACCGCGCCATGCAGCGCTTCACCCATGGAGAATGCTCAG
GAGCATCTGGTGCGGGACGATGACGGGAGCTGGCGCGGCTGGCTTGGCGG
AAAGGTTGCTAATGCTGAAGCGGCAATAGCGTCGGTCTTCAGCAATGACG
TTGAGGCTGACGCCGTGCCTCCGCCAGACCGCCCTGAACAACGACCGTTG
CAGAATGACGACGAGCAGTTCCTTGCGCCGCAGATGTCGCGTACCACTTC
GGGTTTGTCGTTCTCGGAAGCGTGGTGTGCGGTGCGTCGTGCCGCTGTTG
CTGCTATCGGAGGGCTTGAACAGGCTGATGGTGTTGCTTTGACGCCCGAT
TCTAGCGAGACACAGGAAAGCCAGGAGCAGCCTAGTCCCGAACAGCGCGG
CGCCGCGGTTAAGTTGGACAGCCGGCCAGTTTTAGGAGACTGCAAGCAGA
ACGATCCAAATGTACCGTCGGCGCCCATATCAGCTCATTTCTCCATGTCA
GACTGCAGTGAAATGGAACAACTAGGAAAGGATGTACAATTCGATACGTA
TGACGAAGATTTCCATGTGGTGGAGCACAATAATGCCTCTGCTTTGTATG
ACAAGCAGCTCGAGTGTGCAGTGCATCGTGATAAGCAATCTGTAGAGAAA
CCAGAACCCGCCATAAGTGAAGAGCACCTCGCACAACTAAAGAGCCGCTT
CGACATCATGTTTGAGCAGAATGGTGGCGCTGAGTGTGTGGCGCGCGTCA
AGGAGATTGGCGATGTGCAACTCATGGCAATGCGAGATTCCTCCAAAATG
GACTCCCGCGTACTTACAGAATTGTGTGAAGCTAAGCATATCCTAGACAA
GGCCCTCAGCAGTCTCGAGTCTGCAGCCAGAAATCGCACGGATGAAACTG
GTGAAGCTGCCTCGGCTGCTACAAGCGTCATTGAACAGACCAAGGAAAAC
TGCAATCGTGAGCATAATCTTGTAGATGACTGCAGTCGTCTCCTTGCTGT
GTTTGCTAGCAATGTATGTTCGAATGTACTGCGGTGTGTTGAGGAACGTG
ATGTTCATAGTTGGAGTGATCGTGTGAAACGTCTTGTCGATCTTGCGTCT
GTGGGCGTTGGACAGTTGCGTACTATTTGCTTTTCATTTGCTGCTGAGCT
TGCTCCTCATGAAAGATGCGCGCACGCTCTCAAGGACGTTTCTGTCAGGC
ATGTTCTGCAATGTGTTGCGCTTGCCGTGGCTGCATTTCATGTTGAGGCA
GCAGAGCGTGCTGTGCAATGTAGTACAGAATTCTAA