Ggra7579.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7579.t1
Unique NameGgra7579.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length252
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000866_piloncontigtig00000866_pilon:107268..108023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7579Ggra7579Gracilaria gracilis GNS1m malegenetig00000866_pilon 107268..108023 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7579.t1.stop1Ggra7579.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000866_pilon 107268..107270 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7579.t1.CDS1Ggra7579.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000866_pilon 107268..108023 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7579.t1.exon1Ggra7579.t1.exon1Gracilaria gracilis GNS1m maleexontig00000866_pilon 107268..108023 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7579.t1.start1Ggra7579.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000866_pilon 108021..108023 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7579.t1Ggra7579.t1Gracilaria gracilis GNS1m malepolypeptidetig00000866_pilon 107268..108023 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7579.t1 ID=Ggra7579.t1|Name=Ggra7579.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=252bp
MDCSAFVQPSFSSAFTPSRARRAAVSQRPTSSTPARIVMADGEKKPFFRN
PFAAKPKGPNVPAVTFIAPQPGDPGYKEAAQAKPAAEAKPAPKTQTVTQK
SGSSPQKLPVVSGDVIKRGLDLLKEDVLKNAPERAGVGRQDSSAVVMRPQ
AGEPGYKPAAYQTVQVSKLGISTFSDDKNYVSKVGGIDAVKQAALDLKTG
QKTGKQIKKEALMKAENIKMKAEAPKEFDIPDYLKPLPEDTPRRGRSWKN
Y*
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spliced messenger RNA

>Ggra7579.t1 ID=Ggra7579.t1|Name=Ggra7579.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00000866_pilon:107268..108023- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTGCTCCGCTTTCGTGCAACCGTCGTTCTCGTCCGCCTTCACGCC
GTCGCGCGCGCGACGCGCTGCGGTGTCGCAGCGCCCCACATCCTCTACAC
CGGCGCGCATCGTTATGGCAGACGGTGAGAAAAAGCCCTTCTTCCGTAAC
CCATTTGCCGCCAAACCAAAGGGCCCAAATGTTCCAGCCGTTACATTCAT
CGCGCCTCAGCCAGGAGACCCTGGGTACAAGGAGGCTGCCCAGGCAAAGC
CGGCGGCCGAAGCAAAGCCTGCGCCGAAGACGCAGACCGTTACTCAGAAG
AGCGGTTCGTCGCCGCAGAAGCTTCCAGTTGTTTCTGGGGACGTAATCAA
GCGCGGTCTCGATTTGCTCAAGGAGGATGTTCTTAAGAACGCCCCCGAGC
GCGCCGGCGTTGGCCGTCAGGATTCTTCAGCCGTTGTTATGCGTCCGCAA
GCGGGTGAGCCTGGTTACAAGCCCGCCGCCTACCAAACAGTCCAGGTTTC
CAAGTTGGGTATTTCTACCTTCTCCGATGATAAGAACTATGTCAGTAAGG
TTGGTGGAATCGACGCTGTTAAGCAAGCAGCTCTTGATCTTAAGACTGGT
CAAAAGACCGGAAAACAAATCAAGAAAGAGGCTCTCATGAAGGCGGAAAA
CATCAAGATGAAAGCAGAGGCTCCCAAAGAGTTTGATATTCCTGATTATC
TCAAACCACTCCCAGAAGACACTCCTAGGAGGGGTAGATCATGGAAGAAC
TACTAG
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protein sequence of Ggra7579.t1

>Ggra7579.t1 ID=Ggra7579.t1|Name=Ggra7579.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=252bp
MDCSAFVQPSFSSAFTPSRARRAAVSQRPTSSTPARIVMADGEKKPFFRN
PFAAKPKGPNVPAVTFIAPQPGDPGYKEAAQAKPAAEAKPAPKTQTVTQK
SGSSPQKLPVVSGDVIKRGLDLLKEDVLKNAPERAGVGRQDSSAVVMRPQ
AGEPGYKPAAYQTVQVSKLGISTFSDDKNYVSKVGGIDAVKQAALDLKTG
QKTGKQIKKEALMKAENIKMKAEAPKEFDIPDYLKPLPEDTPRRGRSWKN
Y*
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mRNA from alignment at tig00000866_pilon:107268..108023-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7579.t1 ID=Ggra7579.t1|Name=Ggra7579.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00000866_pilon:107268..108023- (Gracilaria gracilis GNS1m male)
ATGGATTGCTCCGCTTTCGTGCAACCGTCGTTCTCGTCCGCCTTCACGCC
GTCGCGCGCGCGACGCGCTGCGGTGTCGCAGCGCCCCACATCCTCTACAC
CGGCGCGCATCGTTATGGCAGACGGTGAGAAAAAGCCCTTCTTCCGTAAC
CCATTTGCCGCCAAACCAAAGGGCCCAAATGTTCCAGCCGTTACATTCAT
CGCGCCTCAGCCAGGAGACCCTGGGTACAAGGAGGCTGCCCAGGCAAAGC
CGGCGGCCGAAGCAAAGCCTGCGCCGAAGACGCAGACCGTTACTCAGAAG
AGCGGTTCGTCGCCGCAGAAGCTTCCAGTTGTTTCTGGGGACGTAATCAA
GCGCGGTCTCGATTTGCTCAAGGAGGATGTTCTTAAGAACGCCCCCGAGC
GCGCCGGCGTTGGCCGTCAGGATTCTTCAGCCGTTGTTATGCGTCCGCAA
GCGGGTGAGCCTGGTTACAAGCCCGCCGCCTACCAAACAGTCCAGGTTTC
CAAGTTGGGTATTTCTACCTTCTCCGATGATAAGAACTATGTCAGTAAGG
TTGGTGGAATCGACGCTGTTAAGCAAGCAGCTCTTGATCTTAAGACTGGT
CAAAAGACCGGAAAACAAATCAAGAAAGAGGCTCTCATGAAGGCGGAAAA
CATCAAGATGAAAGCAGAGGCTCCCAAAGAGTTTGATATTCCTGATTATC
TCAAACCACTCCCAGAAGACACTCCTAGGAGGGGTAGATCATGGAAGAAC
TACTAG
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Coding sequence (CDS) from alignment at tig00000866_pilon:107268..108023-

>Ggra7579.t1 ID=Ggra7579.t1|Name=Ggra7579.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=756bp|location=Sequence derived from alignment at tig00000866_pilon:107268..108023- (Gracilaria gracilis GNS1m male)
ATGGATTGCTCCGCTTTCGTGCAACCGTCGTTCTCGTCCGCCTTCACGCC
GTCGCGCGCGCGACGCGCTGCGGTGTCGCAGCGCCCCACATCCTCTACAC
CGGCGCGCATCGTTATGGCAGACGGTGAGAAAAAGCCCTTCTTCCGTAAC
CCATTTGCCGCCAAACCAAAGGGCCCAAATGTTCCAGCCGTTACATTCAT
CGCGCCTCAGCCAGGAGACCCTGGGTACAAGGAGGCTGCCCAGGCAAAGC
CGGCGGCCGAAGCAAAGCCTGCGCCGAAGACGCAGACCGTTACTCAGAAG
AGCGGTTCGTCGCCGCAGAAGCTTCCAGTTGTTTCTGGGGACGTAATCAA
GCGCGGTCTCGATTTGCTCAAGGAGGATGTTCTTAAGAACGCCCCCGAGC
GCGCCGGCGTTGGCCGTCAGGATTCTTCAGCCGTTGTTATGCGTCCGCAA
GCGGGTGAGCCTGGTTACAAGCCCGCCGCCTACCAAACAGTCCAGGTTTC
CAAGTTGGGTATTTCTACCTTCTCCGATGATAAGAACTATGTCAGTAAGG
TTGGTGGAATCGACGCTGTTAAGCAAGCAGCTCTTGATCTTAAGACTGGT
CAAAAGACCGGAAAACAAATCAAGAAAGAGGCTCTCATGAAGGCGGAAAA
CATCAAGATGAAAGCAGAGGCTCCCAAAGAGTTTGATATTCCTGATTATC
TCAAACCACTCCCAGAAGACACTCCTAGGAGGGGTAGATCATGGAAGAAC
TACTAG
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