Ggra7552.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7552.t1
Unique Name	Ggra7552.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	288

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000866_pilon	contig	tig00000866_pilon:48941..49804 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707085.1
Preferred name	C15orf41
PFAMs	TPD
Max annot lvl	2759\|Eukaryota
Evalue	3.27e-66
EggNOG OGs	arCOG04990@1\|root,2R9SY@2759\|Eukaryota
Description	Protein of unknown function TPD sequence-motif
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7552	Ggra7552	Gracilaria gracilis GNS1m male	gene	tig00000866_pilon 48941..49804 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7552.t1.start1	Ggra7552.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000866_pilon 48941..48943 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7552.t1.CDS1	Ggra7552.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000866_pilon 48941..49804 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7552.t1.exon1	Ggra7552.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000866_pilon 48941..49804 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7552.t1.stop1	Ggra7552.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000866_pilon 49802..49804 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7552.t1	Ggra7552.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000866_pilon 48941..49804 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000866_pilon:48941..49804+
coding sequence from alignment at tig00000866_pilon:48941..49804+

mRNA sequence

>Ggra7552.t1 ID=Ggra7552.t1|Name=Ggra7552.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=288bp
MLMSEWMRMCSLLVCREDTTRIARERPDIGHDTISLIYEQLYARQVAKTF
YLIRMHGKAFVERYQSGQSLTDIAERFNLSPSLVARKVLELHLGLNRRAI
TQLMRDPSSINDERLRQDIALCVEMDEHCSPRLDRLRTALGLEYELRLTD
EVKNLGLEFETENQLRHRGCHKTPDILLCVPVLIRNKVVRWIDSKAKFGD
EYTLNKDYVSSVSSYIGRFGAGMVVYWFGFIEDCDSRMLQDNGLLITEIF
PTEIELLPGGSRFEACLGDDEANESEEDEQIPDWEEL*

spliced messenger RNA

>Ggra7552.t1 ID=Ggra7552.t1|Name=Ggra7552.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00000866_pilon:48941..49804+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGATGTCGGAATGGATGCGAATGTGCTCACTGCTCGTGTGCAGAGA
AGACACAACAAGAATTGCCAGAGAGCGGCCTGACATTGGTCATGACACTA
TTTCACTCATTTACGAACAACTCTACGCACGCCAAGTAGCCAAAACCTTC
TACCTCATTAGGATGCATGGAAAAGCATTTGTCGAAAGGTATCAGAGCGG
CCAGTCGTTGACGGATATTGCTGAACGGTTCAATCTGTCTCCTAGTTTAG
TGGCAAGAAAAGTTTTGGAGCTCCATCTGGGTTTGAATCGAAGAGCAATA
ACCCAGCTTATGCGTGATCCATCAAGTATCAACGACGAACGCTTACGTCA
GGATATTGCCCTCTGTGTGGAAATGGACGAACATTGCAGTCCCAGGCTGG
ATCGGCTGCGAACTGCGCTAGGTCTTGAGTATGAGTTGCGGCTCACAGAT
GAGGTCAAGAATCTTGGTCTGGAATTTGAAACTGAGAATCAGTTACGACA
TCGCGGGTGCCACAAGACCCCTGATATCTTACTCTGCGTCCCAGTTTTAA
TTCGCAACAAGGTCGTTCGATGGATCGACAGTAAGGCAAAATTTGGGGAT
GAGTATACTCTGAATAAGGATTACGTTTCTTCTGTAAGTTCTTATATTGG
AAGATTTGGTGCAGGTATGGTTGTGTACTGGTTTGGATTTATTGAAGACT
GCGACTCTCGTATGTTACAGGACAATGGACTCTTGATCACAGAAATATTC
CCAACTGAGATTGAATTGCTTCCCGGAGGCAGCAGGTTTGAGGCCTGTCT
AGGCGATGATGAAGCTAACGAAAGTGAAGAGGATGAACAAATTCCAGATT
GGGAAGAACTCTGA

protein sequence of Ggra7552.t1

>Ggra7552.t1 ID=Ggra7552.t1|Name=Ggra7552.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=288bp
MLMSEWMRMCSLLVCREDTTRIARERPDIGHDTISLIYEQLYARQVAKTF
YLIRMHGKAFVERYQSGQSLTDIAERFNLSPSLVARKVLELHLGLNRRAI
TQLMRDPSSINDERLRQDIALCVEMDEHCSPRLDRLRTALGLEYELRLTD
EVKNLGLEFETENQLRHRGCHKTPDILLCVPVLIRNKVVRWIDSKAKFGD
EYTLNKDYVSSVSSYIGRFGAGMVVYWFGFIEDCDSRMLQDNGLLITEIF
PTEIELLPGGSRFEACLGDDEANESEEDEQIPDWEEL*

mRNA from alignment at tig00000866_pilon:48941..49804+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7552.t1 ID=Ggra7552.t1|Name=Ggra7552.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00000866_pilon:48941..49804+ (Gracilaria gracilis GNS1m male)
ATGTTGATGTCGGAATGGATGCGAATGTGCTCACTGCTCGTGTGCAGAGA
AGACACAACAAGAATTGCCAGAGAGCGGCCTGACATTGGTCATGACACTA
TTTCACTCATTTACGAACAACTCTACGCACGCCAAGTAGCCAAAACCTTC
TACCTCATTAGGATGCATGGAAAAGCATTTGTCGAAAGGTATCAGAGCGG
CCAGTCGTTGACGGATATTGCTGAACGGTTCAATCTGTCTCCTAGTTTAG
TGGCAAGAAAAGTTTTGGAGCTCCATCTGGGTTTGAATCGAAGAGCAATA
ACCCAGCTTATGCGTGATCCATCAAGTATCAACGACGAACGCTTACGTCA
GGATATTGCCCTCTGTGTGGAAATGGACGAACATTGCAGTCCCAGGCTGG
ATCGGCTGCGAACTGCGCTAGGTCTTGAGTATGAGTTGCGGCTCACAGAT
GAGGTCAAGAATCTTGGTCTGGAATTTGAAACTGAGAATCAGTTACGACA
TCGCGGGTGCCACAAGACCCCTGATATCTTACTCTGCGTCCCAGTTTTAA
TTCGCAACAAGGTCGTTCGATGGATCGACAGTAAGGCAAAATTTGGGGAT
GAGTATACTCTGAATAAGGATTACGTTTCTTCTGTAAGTTCTTATATTGG
AAGATTTGGTGCAGGTATGGTTGTGTACTGGTTTGGATTTATTGAAGACT
GCGACTCTCGTATGTTACAGGACAATGGACTCTTGATCACAGAAATATTC
CCAACTGAGATTGAATTGCTTCCCGGAGGCAGCAGGTTTGAGGCCTGTCT
AGGCGATGATGAAGCTAACGAAAGTGAAGAGGATGAACAAATTCCAGATT
GGGAAGAACTCTGA

Coding sequence (CDS) from alignment at tig00000866_pilon:48941..49804+

>Ggra7552.t1 ID=Ggra7552.t1|Name=Ggra7552.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=864bp|location=Sequence derived from alignment at tig00000866_pilon:48941..49804+ (Gracilaria gracilis GNS1m male)
ATGTTGATGTCGGAATGGATGCGAATGTGCTCACTGCTCGTGTGCAGAGA
AGACACAACAAGAATTGCCAGAGAGCGGCCTGACATTGGTCATGACACTA
TTTCACTCATTTACGAACAACTCTACGCACGCCAAGTAGCCAAAACCTTC
TACCTCATTAGGATGCATGGAAAAGCATTTGTCGAAAGGTATCAGAGCGG
CCAGTCGTTGACGGATATTGCTGAACGGTTCAATCTGTCTCCTAGTTTAG
TGGCAAGAAAAGTTTTGGAGCTCCATCTGGGTTTGAATCGAAGAGCAATA
ACCCAGCTTATGCGTGATCCATCAAGTATCAACGACGAACGCTTACGTCA
GGATATTGCCCTCTGTGTGGAAATGGACGAACATTGCAGTCCCAGGCTGG
ATCGGCTGCGAACTGCGCTAGGTCTTGAGTATGAGTTGCGGCTCACAGAT
GAGGTCAAGAATCTTGGTCTGGAATTTGAAACTGAGAATCAGTTACGACA
TCGCGGGTGCCACAAGACCCCTGATATCTTACTCTGCGTCCCAGTTTTAA
TTCGCAACAAGGTCGTTCGATGGATCGACAGTAAGGCAAAATTTGGGGAT
GAGTATACTCTGAATAAGGATTACGTTTCTTCTGTAAGTTCTTATATTGG
AAGATTTGGTGCAGGTATGGTTGTGTACTGGTTTGGATTTATTGAAGACT
GCGACTCTCGTATGTTACAGGACAATGGACTCTTGATCACAGAAATATTC
CCAACTGAGATTGAATTGCTTCCCGGAGGCAGCAGGTTTGAGGCCTGTCT
AGGCGATGATGAAGCTAACGAAAGTGAAGAGGATGAACAAATTCCAGATT
GGGAAGAACTCTGA