Ggra7532.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7532.t1
Unique NameGgra7532.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length362
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000102_piloncontigtig00000102_pilon:318839..321010 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog235985.BBPN01000004_gene3194
PFAMsRHS,RHS_repeat,Tox-HNH-EHHH
Max annot lvl201174|Actinobacteria
Evalue5.53e-11
EggNOG OGsCOG3209@1|root,COG3209@2|Bacteria,2GMBB@201174|Actinobacteria,2NFRY@228398|Streptacidiphilus
DescriptionRHS Repeat
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7532Ggra7532Gracilaria gracilis GNS1m malegenetig00000102_pilon 318839..321010 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7532.t1Ggra7532.t1Gracilaria gracilis GNS1m malepolypeptidetig00000102_pilon 318839..321010 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7532.t1.stop1Ggra7532.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000102_pilon 318839..318841 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7532.t1.CDS1Ggra7532.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000102_pilon 318839..319500 -
Ggra7532.t1.CDS2Ggra7532.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000102_pilon 320587..321010 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7532.t1.exon1Ggra7532.t1.exon1Gracilaria gracilis GNS1m maleexontig00000102_pilon 318839..319500 -
Ggra7532.t1.exon2Ggra7532.t1.exon2Gracilaria gracilis GNS1m maleexontig00000102_pilon 320587..321010 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7532.t1.intron1Ggra7532.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000102_pilon 319501..320586 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7532.t1.start1Ggra7532.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000102_pilon 321008..321010 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7532.t1 ID=Ggra7532.t1|Name=Ggra7532.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=362bp
MSELSVSKVKFRDSPSGAGLTNSISGRLYKRSEKDERLILLKRALEGGRF
TGNHDEEAVNFAVSYESRGVTPCKPQGLAELDTMICDIFRQYGVNDFRLW
FDNIYTSGAAPHMAGQEWVQHGLSPYAFSVVLVLGGASVAHGFSFHVDEI
GIFEFNTTVRPSGLHLIDAANVLAFSQHGGFLANRGFDDEQKNLDVHACM
TQASYNALRKDKSPGGSIKPSGWKQLANGPRRQRCYLIAARLGGSHKDAR
NFVTCHAYANSPVMACYERLVAEKLISLDHGLTIVYAITPIYEEPALYPI
NIRMRAVRRGFRIFGVLYDLIIWNSDLNGVRVKFVCVGSLDQPGPPSLPR
RRIERSSSPCT*
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spliced messenger RNA

>Ggra7532.t1 ID=Ggra7532.t1|Name=Ggra7532.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1086bp|location=Sequence derived from alignment at tig00000102_pilon:318839..321010- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGAGCTGTCTGTATCGAAGGTAAAGTTTCGGGACAGCCCATCAGG
CGCCGGTCTCACCAACTCCATCTCAGGCCGCCTTTACAAACGTTCAGAGA
AAGATGAACGTCTTATACTTCTAAAAAGGGCTCTTGAAGGTGGAAGATTT
ACCGGGAATCATGATGAAGAAGCCGTGAATTTTGCAGTATCCTACGAATC
CCGTGGAGTGACTCCATGCAAGCCCCAAGGTCTTGCAGAGTTGGATACCA
TGATTTGCGACATATTTAGGCAGTATGGCGTTAACGACTTTCGTTTGTGG
TTCGATAACATTTATACGAGTGGGGCGGCGCCTCATATGGCGGGCCAGGA
GTGGGTGCAACATGGTCTTTCTCCGTACGCTTTTAGTGTTGTGCTCGTTC
TTGGGGGCGCATCTGTGGCTCACGGGTTCAGCTTTCATGTGGATGAGATT
GGAATCTTTGAGTTCAACACTACAGTCAGGCCAAGTGGTCTGCATTTGAT
AGATGCAGCAAACGTTCTAGCTTTTTCGCAGCATGGCGGTTTTCTTGCGA
ACAGAGGATTCGATGATGAGCAAAAGAACTTAGATGTTCACGCTTGCATG
ACCCAGGCAAGTTATAACGCGCTCAGAAAAGATAAGTCACCTGGAGGATC
GATCAAGCCTTCTGGATGGAAACAACTCGCAAATGGACCAAGGAGGCAGC
GTTGCTATCTGATTGCAGCCCGCCTCGGTGGCTCGCACAAAGATGCCAGG
AACTTCGTTACTTGCCATGCGTACGCAAATTCTCCAGTTATGGCTTGCTA
CGAACGTCTCGTGGCCGAGAAGTTAATCTCATTGGACCATGGACTTACAA
TTGTTTATGCTATAACTCCAATATACGAAGAACCAGCATTGTACCCGATC
AACATTAGAATGAGAGCTGTTCGGCGAGGATTTCGCATCTTTGGTGTTTT
GTATGATTTAATTATATGGAACAGCGATTTGAACGGAGTCAGAGTTAAGT
TTGTTTGCGTTGGAAGTCTTGACCAGCCCGGACCGCCTTCGCTTCCTAGA
AGAAGAATTGAGCGAAGTTCTTCGCCCTGCACGTAA
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protein sequence of Ggra7532.t1

>Ggra7532.t1 ID=Ggra7532.t1|Name=Ggra7532.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=362bp
MSELSVSKVKFRDSPSGAGLTNSISGRLYKRSEKDERLILLKRALEGGRF
TGNHDEEAVNFAVSYESRGVTPCKPQGLAELDTMICDIFRQYGVNDFRLW
FDNIYTSGAAPHMAGQEWVQHGLSPYAFSVVLVLGGASVAHGFSFHVDEI
GIFEFNTTVRPSGLHLIDAANVLAFSQHGGFLANRGFDDEQKNLDVHACM
TQASYNALRKDKSPGGSIKPSGWKQLANGPRRQRCYLIAARLGGSHKDAR
NFVTCHAYANSPVMACYERLVAEKLISLDHGLTIVYAITPIYEEPALYPI
NIRMRAVRRGFRIFGVLYDLIIWNSDLNGVRVKFVCVGSLDQPGPPSLPR
RRIERSSSPCT*
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mRNA from alignment at tig00000102_pilon:318839..321010-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7532.t1 ID=Ggra7532.t1|Name=Ggra7532.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2172bp|location=Sequence derived from alignment at tig00000102_pilon:318839..321010- (Gracilaria gracilis GNS1m male)
ATGTCAGAGCTGTCTGTATCGAAGGTAAAGTTTCGGGACAGCCCATCAGG
CGCCGGTCTCACCAACTCCATCTCAGGCCGCCTTTACAAACGTTCAGAGA
AAGATGAACGTCTTATACTTCTAAAAAGGGCTCTTGAAGGTGGAAGATTT
ACCGGGAATCATGATGAAGAAGCCGTGAATTTTGCAGTATCCTACGAATC
CCGTGGAGTGACTCCATGCAAGCCCCAAGGTCTTGCAGAGTTGGATACCA
TGATTTGCGACATATTTAGGCAGTATGGCGTTAACGACTTTCGTTTGTGG
TTCGATAACATTTATACGAGTGGGGCGGCGCCTCATATGGCGGGCCAGGA
GTGGGTGCAACATGGTCTTTCTCCGTACGCTTTTAGTGTTGTGCTCGTTC
TTGGGGGCGCATCTGTGGCTCACGGTTCAATGCGTGCTTGGGTTTGCAGT
GAGGTGGCTACTGGGCGTGTACACAAGGGATACGTTTATTGTTCAACCCT
AACTCTGTTCTCTTTCACAATCAGTATGACTCCTGTCATGTGCCGTGGAT
ATCGCACTAGTTGGAACTCGTCCACGGGAAGATCTGAAGCGCGTACTATT
TATCAAGAACTATATGATGGCGACACCTCGTGCTTCAGTAAGAGTGATAA
AAAAGGTTTGTTGTCTTTAATGAGGCAATGGTCCGGCCGTCGTTAAGCAC
CCGGTTTGTTTCTGTGTAACACAAATGGTCGCAGTTTTAGCATGTGATGC
ACTTCGCATTTCGAGTAGATACGGATTGAGGGGCGAGCCATCATGATGTT
TCCAATACAAGGTACTGTACAGGTATGGGTTCAGGCTGCTTGCAAATGGA
GAACATCTAGCTAGAGACGACGCCGAGCAGACTTCTCTCTCCCGTCTACG
TCTTGTGAGCACTATACGTAAACCTACAACGTCATTAGTCAGCAGACGAC
ATTCGCTGGCAAACCCAGCGCCGTCGCATCGCCCTTTGAGCGCCGCACAG
AAAATAGACAAACGTATCACTCTCTCTCTCTATCACCCTCGTCGCAGTAT
TCCGTTTAACATCATTATGCTCTCCATTCGCAACCACATTCGTAAACCTC
TTCTAAAATATCAAACGGTGCCATTAACTGCACCAGTGAACACAAAATTT
TGCCAATGACTGTGAGCGCACTGATCCGTACGAGAGCCAGATCAACGCGT
ACCACCACACTCTACATTTTGGCTGTCATATAGTGGATGGTGCGACCTTC
TCGGAATCCGGGAGGGCGTCAAAGTTCTGCTTGTTTCGTGTCTCACATGC
TTGGAAGCTCACTTCGATGCGATTGATTGCCATATAGATTGCTCCTATAA
AAGCAGAAGGACAATGAACGAGTCAAGAACAAAGACATACAGAGATTTGC
CCGACATTCAAACTCCATCCCAAGGCTCTTTCTCTCTATCTCTGCGACAA
TGGGTTTCTGTGCTTTCCATCTTCCTATTATTCTCATACTGTTATCTCTA
GCTTTAGCAGGGTTCAGCTTTCATGTGGATGAGATTGGAATCTTTGAGTT
CAACACTACAGTCAGGCCAAGTGGTCTGCATTTGATAGATGCAGCAAACG
TTCTAGCTTTTTCGCAGCATGGCGGTTTTCTTGCGAACAGAGGATTCGAT
GATGAGCAAAAGAACTTAGATGTTCACGCTTGCATGACCCAGGCAAGTTA
TAACGCGCTCAGAAAAGATAAGTCACCTGGAGGATCGATCAAGCCTTCTG
GATGGAAACAACTCGCAAATGGACCAAGGAGGCAGCGTTGCTATCTGATT
GCAGCCCGCCTCGGTGGCTCGCACAAAGATGCCAGGAACTTCGTTACTTG
CCATGCGTACGCAAATTCTCCAGTTATGGCTTGCTACGAACGTCTCGTGG
CCGAGAAGTTAATCTCATTGGACCATGGACTTACAATTGTTTATGCTATA
ACTCCAATATACGAAGAACCAGCATTGTACCCGATCAACATTAGAATGAG
AGCTGTTCGGCGAGGATTTCGCATCTTTGGTGTTTTGTATGATTTAATTA
TATGGAACAGCGATTTGAACGGAGTCAGAGTTAAGTTTGTTTGCGTTGGA
AGTCTTGACCAGCCCGGACCGCCTTCGCTTCCTAGAAGAAGAATTGAGCG
AAGTTCTTCGCCCTGCACGTAA
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Coding sequence (CDS) from alignment at tig00000102_pilon:318839..321010-

>Ggra7532.t1 ID=Ggra7532.t1|Name=Ggra7532.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1086bp|location=Sequence derived from alignment at tig00000102_pilon:318839..321010- (Gracilaria gracilis GNS1m male)
ATGTCAGAGCTGTCTGTATCGAAGGTAAAGTTTCGGGACAGCCCATCAGG
CGCCGGTCTCACCAACTCCATCTCAGGCCGCCTTTACAAACGTTCAGAGA
AAGATGAACGTCTTATACTTCTAAAAAGGGCTCTTGAAGGTGGAAGATTT
ACCGGGAATCATGATGAAGAAGCCGTGAATTTTGCAGTATCCTACGAATC
CCGTGGAGTGACTCCATGCAAGCCCCAAGGTCTTGCAGAGTTGGATACCA
TGATTTGCGACATATTTAGGCAGTATGGCGTTAACGACTTTCGTTTGTGG
TTCGATAACATTTATACGAGTGGGGCGGCGCCTCATATGGCGGGCCAGGA
GTGGGTGCAACATGGTCTTTCTCCGTACGCTTTTAGTGTTGTGCTCGTTC
TTGGGGGCGCATCTGTGGCTCACGGGTTCAGCTTTCATGTGGATGAGATT
GGAATCTTTGAGTTCAACACTACAGTCAGGCCAAGTGGTCTGCATTTGAT
AGATGCAGCAAACGTTCTAGCTTTTTCGCAGCATGGCGGTTTTCTTGCGA
ACAGAGGATTCGATGATGAGCAAAAGAACTTAGATGTTCACGCTTGCATG
ACCCAGGCAAGTTATAACGCGCTCAGAAAAGATAAGTCACCTGGAGGATC
GATCAAGCCTTCTGGATGGAAACAACTCGCAAATGGACCAAGGAGGCAGC
GTTGCTATCTGATTGCAGCCCGCCTCGGTGGCTCGCACAAAGATGCCAGG
AACTTCGTTACTTGCCATGCGTACGCAAATTCTCCAGTTATGGCTTGCTA
CGAACGTCTCGTGGCCGAGAAGTTAATCTCATTGGACCATGGACTTACAA
TTGTTTATGCTATAACTCCAATATACGAAGAACCAGCATTGTACCCGATC
AACATTAGAATGAGAGCTGTTCGGCGAGGATTTCGCATCTTTGGTGTTTT
GTATGATTTAATTATATGGAACAGCGATTTGAACGGAGTCAGAGTTAAGT
TTGTTTGCGTTGGAAGTCTTGACCAGCCCGGACCGCCTTCGCTTCCTAGA
AGAAGAATTGAGCGAAGTTCTTCGCCCTGCACGTAA
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