Ggra7490.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7490.t1
Unique NameGgra7490.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length313
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000102_piloncontigtig00000102_pilon:173841..174779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7490Ggra7490Gracilaria gracilis GNS1m malegenetig00000102_pilon 173841..174779 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7490.t1.stop1Ggra7490.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000102_pilon 173841..173843 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7490.t1.CDS1Ggra7490.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000102_pilon 173841..174779 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7490.t1.exon1Ggra7490.t1.exon1Gracilaria gracilis GNS1m maleexontig00000102_pilon 173841..174779 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7490.t1.start1Ggra7490.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000102_pilon 174777..174779 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7490.t1Ggra7490.t1Gracilaria gracilis GNS1m malepolypeptidetig00000102_pilon 173841..174779 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7490.t1 ID=Ggra7490.t1|Name=Ggra7490.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=313bp
MSRELLCVALFVLIVVTHAAPVAPSLPHASVERAVVRRRHAHHVAFVIRA
AQLAVPGHEEGDGLESAAAAEGANHTDVGKGDAAVAENETAQNEGQHTLP
TGSETKESDTKPSEAKQSDTQAGATQQGKPQQGKPQQSVPEQSETQQNET
QQNETQQNETQQNETQQNEPQQSEPQQSTTQQSEPQQNDTISDPRTQSDE
NAQLEQPLQAQQAQDGANFSKKSMQPPFNPSVSTVGFVGAIATVIVAAFL
VWSKSSNSSLSPVQLASHAYQRVRSGAQDHNVSAQSSADADGWNAGWDDD
DDWNPEAPSAKV*
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spliced messenger RNA

>Ggra7490.t1 ID=Ggra7490.t1|Name=Ggra7490.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=939bp|location=Sequence derived from alignment at tig00000102_pilon:173841..174779- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGCGAGCTTCTTTGCGTCGCATTGTTTGTACTCATCGTCGTCAC
GCACGCCGCCCCCGTTGCTCCGTCTTTGCCACACGCGTCGGTCGAACGGG
CCGTTGTGAGGAGACGACACGCTCATCATGTCGCTTTTGTTATTCGCGCC
GCTCAGCTGGCTGTGCCGGGCCACGAGGAAGGGGACGGATTGGAGAGTGC
TGCTGCTGCTGAGGGTGCCAACCACACAGATGTTGGCAAGGGTGACGCCG
CTGTCGCCGAAAACGAGACGGCACAGAACGAAGGGCAACACACCCTTCCG
ACAGGGAGTGAGACAAAGGAGAGCGACACAAAACCGAGCGAAGCGAAGCA
GAGCGACACGCAAGCGGGTGCAACGCAGCAGGGCAAACCCCAGCAGGGCA
AACCGCAGCAGAGCGTACCTGAGCAGAGCGAGACACAGCAGAACGAGACC
CAGCAGAACGAGACCCAGCAGAACGAGACCCAGCAGAACGAGACCCAGCA
GAACGAGCCGCAGCAGAGCGAACCACAGCAGAGCACAACGCAGCAGAGTG
AGCCGCAGCAAAACGATACCATTTCCGACCCAAGAACGCAGTCTGACGAA
AACGCGCAGCTCGAGCAACCACTCCAAGCTCAGCAAGCTCAGGATGGCGC
CAACTTTTCAAAGAAATCCATGCAACCGCCATTCAATCCTTCCGTCTCCA
CAGTTGGCTTTGTGGGCGCCATTGCTACTGTCATTGTCGCAGCGTTTCTC
GTTTGGTCAAAGTCTTCAAATAGTTCGTTGTCACCTGTACAACTTGCGAG
TCATGCGTATCAACGCGTGCGTAGCGGTGCTCAAGACCACAACGTTTCCG
CCCAGAGTTCTGCAGACGCTGATGGATGGAATGCTGGATGGGATGATGAT
GATGATTGGAATCCGGAGGCACCAAGTGCAAAAGTCTGA
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protein sequence of Ggra7490.t1

>Ggra7490.t1 ID=Ggra7490.t1|Name=Ggra7490.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=313bp
MSRELLCVALFVLIVVTHAAPVAPSLPHASVERAVVRRRHAHHVAFVIRA
AQLAVPGHEEGDGLESAAAAEGANHTDVGKGDAAVAENETAQNEGQHTLP
TGSETKESDTKPSEAKQSDTQAGATQQGKPQQGKPQQSVPEQSETQQNET
QQNETQQNETQQNETQQNEPQQSEPQQSTTQQSEPQQNDTISDPRTQSDE
NAQLEQPLQAQQAQDGANFSKKSMQPPFNPSVSTVGFVGAIATVIVAAFL
VWSKSSNSSLSPVQLASHAYQRVRSGAQDHNVSAQSSADADGWNAGWDDD
DDWNPEAPSAKV*
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mRNA from alignment at tig00000102_pilon:173841..174779-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7490.t1 ID=Ggra7490.t1|Name=Ggra7490.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=939bp|location=Sequence derived from alignment at tig00000102_pilon:173841..174779- (Gracilaria gracilis GNS1m male)
ATGTCGCGCGAGCTTCTTTGCGTCGCATTGTTTGTACTCATCGTCGTCAC
GCACGCCGCCCCCGTTGCTCCGTCTTTGCCACACGCGTCGGTCGAACGGG
CCGTTGTGAGGAGACGACACGCTCATCATGTCGCTTTTGTTATTCGCGCC
GCTCAGCTGGCTGTGCCGGGCCACGAGGAAGGGGACGGATTGGAGAGTGC
TGCTGCTGCTGAGGGTGCCAACCACACAGATGTTGGCAAGGGTGACGCCG
CTGTCGCCGAAAACGAGACGGCACAGAACGAAGGGCAACACACCCTTCCG
ACAGGGAGTGAGACAAAGGAGAGCGACACAAAACCGAGCGAAGCGAAGCA
GAGCGACACGCAAGCGGGTGCAACGCAGCAGGGCAAACCCCAGCAGGGCA
AACCGCAGCAGAGCGTACCTGAGCAGAGCGAGACACAGCAGAACGAGACC
CAGCAGAACGAGACCCAGCAGAACGAGACCCAGCAGAACGAGACCCAGCA
GAACGAGCCGCAGCAGAGCGAACCACAGCAGAGCACAACGCAGCAGAGTG
AGCCGCAGCAAAACGATACCATTTCCGACCCAAGAACGCAGTCTGACGAA
AACGCGCAGCTCGAGCAACCACTCCAAGCTCAGCAAGCTCAGGATGGCGC
CAACTTTTCAAAGAAATCCATGCAACCGCCATTCAATCCTTCCGTCTCCA
CAGTTGGCTTTGTGGGCGCCATTGCTACTGTCATTGTCGCAGCGTTTCTC
GTTTGGTCAAAGTCTTCAAATAGTTCGTTGTCACCTGTACAACTTGCGAG
TCATGCGTATCAACGCGTGCGTAGCGGTGCTCAAGACCACAACGTTTCCG
CCCAGAGTTCTGCAGACGCTGATGGATGGAATGCTGGATGGGATGATGAT
GATGATTGGAATCCGGAGGCACCAAGTGCAAAAGTCTGA
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Coding sequence (CDS) from alignment at tig00000102_pilon:173841..174779-

>Ggra7490.t1 ID=Ggra7490.t1|Name=Ggra7490.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=939bp|location=Sequence derived from alignment at tig00000102_pilon:173841..174779- (Gracilaria gracilis GNS1m male)
ATGTCGCGCGAGCTTCTTTGCGTCGCATTGTTTGTACTCATCGTCGTCAC
GCACGCCGCCCCCGTTGCTCCGTCTTTGCCACACGCGTCGGTCGAACGGG
CCGTTGTGAGGAGACGACACGCTCATCATGTCGCTTTTGTTATTCGCGCC
GCTCAGCTGGCTGTGCCGGGCCACGAGGAAGGGGACGGATTGGAGAGTGC
TGCTGCTGCTGAGGGTGCCAACCACACAGATGTTGGCAAGGGTGACGCCG
CTGTCGCCGAAAACGAGACGGCACAGAACGAAGGGCAACACACCCTTCCG
ACAGGGAGTGAGACAAAGGAGAGCGACACAAAACCGAGCGAAGCGAAGCA
GAGCGACACGCAAGCGGGTGCAACGCAGCAGGGCAAACCCCAGCAGGGCA
AACCGCAGCAGAGCGTACCTGAGCAGAGCGAGACACAGCAGAACGAGACC
CAGCAGAACGAGACCCAGCAGAACGAGACCCAGCAGAACGAGACCCAGCA
GAACGAGCCGCAGCAGAGCGAACCACAGCAGAGCACAACGCAGCAGAGTG
AGCCGCAGCAAAACGATACCATTTCCGACCCAAGAACGCAGTCTGACGAA
AACGCGCAGCTCGAGCAACCACTCCAAGCTCAGCAAGCTCAGGATGGCGC
CAACTTTTCAAAGAAATCCATGCAACCGCCATTCAATCCTTCCGTCTCCA
CAGTTGGCTTTGTGGGCGCCATTGCTACTGTCATTGTCGCAGCGTTTCTC
GTTTGGTCAAAGTCTTCAAATAGTTCGTTGTCACCTGTACAACTTGCGAG
TCATGCGTATCAACGCGTGCGTAGCGGTGCTCAAGACCACAACGTTTCCG
CCCAGAGTTCTGCAGACGCTGATGGATGGAATGCTGGATGGGATGATGAT
GATGATTGGAATCCGGAGGCACCAAGTGCAAAAGTCTGA
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