Ggra7488.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7488.t1
Unique NameGgra7488.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length178
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000102_piloncontigtig00000102_pilon:171659..172192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2711.XP_006490792.1
PFAMsDUF3007
Max annot lvl35493|Streptophyta
Evalue1.65e-19
EggNOG OGs2CJ9H@1|root,2RZP3@2759|Eukaryota,37UK6@33090|Viridiplantae,3GICA@35493|Streptophyta
DescriptionProtein of unknown function (DUF3007)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7488Ggra7488Gracilaria gracilis GNS1m malegenetig00000102_pilon 171659..172192 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7488.t1.stop1Ggra7488.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000102_pilon 171659..171661 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7488.t1.CDS1Ggra7488.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000102_pilon 171659..172192 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7488.t1.exon1Ggra7488.t1.exon1Gracilaria gracilis GNS1m maleexontig00000102_pilon 171659..172192 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7488.t1.start1Ggra7488.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000102_pilon 172190..172192 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7488.t1Ggra7488.t1Gracilaria gracilis GNS1m malepolypeptidetig00000102_pilon 171659..172192 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7488.t1 ID=Ggra7488.t1|Name=Ggra7488.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=178bp
MPLHFAFVPALTCVSTSTKSSSLIRPFKPGTAKGAACHFNRTRRALRSSI
RMAEERNQSAPDRNDGRGTSSLFGIRLKTNGDVIKFGFAAIALVYAIKTG
LQVAGVPDLLAGQLTTAFVSVFSLLAWVSTYLFRVGSKGMTYAQQLREYE
DEVIKKRYEELTEEELAALGEELSDEA*
back to top

spliced messenger RNA

>Ggra7488.t1 ID=Ggra7488.t1|Name=Ggra7488.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00000102_pilon:171659..172192- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCCTTCATTTCGCCTTCGTTCCAGCTCTCACTTGTGTATCAACTTC
TACGAAAAGTTCGTCGTTGATACGTCCCTTCAAACCGGGCACAGCTAAGG
GGGCAGCATGCCACTTCAATCGTACGCGTCGCGCGCTCCGGAGCTCAATT
CGCATGGCAGAAGAACGAAATCAGTCTGCACCCGACAGAAATGATGGACG
TGGAACGTCCAGTTTGTTTGGCATAAGATTGAAAACGAACGGAGATGTTA
TCAAGTTTGGGTTTGCTGCTATTGCATTAGTTTATGCGATTAAGACTGGG
CTTCAAGTGGCTGGCGTACCTGACCTGCTTGCAGGGCAGTTGACTACTGC
TTTTGTCTCTGTGTTCAGCTTACTGGCTTGGGTTTCTACCTACTTATTCC
GCGTCGGCAGTAAGGGAATGACGTATGCACAGCAGTTACGGGAATACGAG
GATGAAGTTATAAAGAAGCGGTACGAAGAGCTCACAGAAGAGGAGTTGGC
AGCTCTCGGCGAAGAACTAAGTGATGAAGCATAG
back to top

protein sequence of Ggra7488.t1

>Ggra7488.t1 ID=Ggra7488.t1|Name=Ggra7488.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=178bp
MPLHFAFVPALTCVSTSTKSSSLIRPFKPGTAKGAACHFNRTRRALRSSI
RMAEERNQSAPDRNDGRGTSSLFGIRLKTNGDVIKFGFAAIALVYAIKTG
LQVAGVPDLLAGQLTTAFVSVFSLLAWVSTYLFRVGSKGMTYAQQLREYE
DEVIKKRYEELTEEELAALGEELSDEA*
back to top

mRNA from alignment at tig00000102_pilon:171659..172192-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7488.t1 ID=Ggra7488.t1|Name=Ggra7488.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00000102_pilon:171659..172192- (Gracilaria gracilis GNS1m male)
ATGCCCCTTCATTTCGCCTTCGTTCCAGCTCTCACTTGTGTATCAACTTC
TACGAAAAGTTCGTCGTTGATACGTCCCTTCAAACCGGGCACAGCTAAGG
GGGCAGCATGCCACTTCAATCGTACGCGTCGCGCGCTCCGGAGCTCAATT
CGCATGGCAGAAGAACGAAATCAGTCTGCACCCGACAGAAATGATGGACG
TGGAACGTCCAGTTTGTTTGGCATAAGATTGAAAACGAACGGAGATGTTA
TCAAGTTTGGGTTTGCTGCTATTGCATTAGTTTATGCGATTAAGACTGGG
CTTCAAGTGGCTGGCGTACCTGACCTGCTTGCAGGGCAGTTGACTACTGC
TTTTGTCTCTGTGTTCAGCTTACTGGCTTGGGTTTCTACCTACTTATTCC
GCGTCGGCAGTAAGGGAATGACGTATGCACAGCAGTTACGGGAATACGAG
GATGAAGTTATAAAGAAGCGGTACGAAGAGCTCACAGAAGAGGAGTTGGC
AGCTCTCGGCGAAGAACTAAGTGATGAAGCATAG
back to top

Coding sequence (CDS) from alignment at tig00000102_pilon:171659..172192-

>Ggra7488.t1 ID=Ggra7488.t1|Name=Ggra7488.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=534bp|location=Sequence derived from alignment at tig00000102_pilon:171659..172192- (Gracilaria gracilis GNS1m male)
ATGCCCCTTCATTTCGCCTTCGTTCCAGCTCTCACTTGTGTATCAACTTC
TACGAAAAGTTCGTCGTTGATACGTCCCTTCAAACCGGGCACAGCTAAGG
GGGCAGCATGCCACTTCAATCGTACGCGTCGCGCGCTCCGGAGCTCAATT
CGCATGGCAGAAGAACGAAATCAGTCTGCACCCGACAGAAATGATGGACG
TGGAACGTCCAGTTTGTTTGGCATAAGATTGAAAACGAACGGAGATGTTA
TCAAGTTTGGGTTTGCTGCTATTGCATTAGTTTATGCGATTAAGACTGGG
CTTCAAGTGGCTGGCGTACCTGACCTGCTTGCAGGGCAGTTGACTACTGC
TTTTGTCTCTGTGTTCAGCTTACTGGCTTGGGTTTCTACCTACTTATTCC
GCGTCGGCAGTAAGGGAATGACGTATGCACAGCAGTTACGGGAATACGAG
GATGAAGTTATAAAGAAGCGGTACGAAGAGCTCACAGAAGAGGAGTTGGC
AGCTCTCGGCGAAGAACTAAGTGATGAAGCATAG
back to top