Ggra7471.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7471.t2
Unique NameGgra7471.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length806
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000102_piloncontigtig00000102_pilon:132594..135011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog71139.XP_010037928.1
PFAMsPPR,PPR_2,PPR_3
Max annot lvl35493|Streptophyta
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363
Evalue6.8e-07
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota,37R8Y@33090|Viridiplantae,3G8FN@35493|Streptophyta
DescriptionPentatricopeptide repeat-containing protein At3g09650
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7471Ggra7471Gracilaria gracilis GNS1m malegenetig00000102_pilon 132594..135011 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7471.t2.start1Ggra7471.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000102_pilon 132594..132596 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7471.t2.CDS1Ggra7471.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000102_pilon 132594..135011 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7471.t2.exon1Ggra7471.t2.exon1Gracilaria gracilis GNS1m maleexontig00000102_pilon 132594..135011 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7471.t2.stop1Ggra7471.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000102_pilon 135009..135011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7471.t2Ggra7471.t2Gracilaria gracilis GNS1m malepolypeptidetig00000102_pilon 132594..135011 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7471.t2 ID=Ggra7471.t2|Name=Ggra7471.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=806bp
MAPPCHCERAVPLTFLSPCVLPRLQEYCTRSPSLNQRSIQARQARPRISP
DIHRATTLRKAGELHKAYDVLNSALPHVRQHVAYNRELIRTTAALIAQSS
SVESAEQLWFALERILRGDCSRPDSFTFNSLLSALRVLDAERNLPQHAQQ
HEKLDVLRLAKVVFDAMIDLGVRPDQFTMSILFNMCAFRADKRYAALFEK
QAVDDFGFKPNIVSGTSLLAAFAKSASLEEVDRVVNILQQQQVPFNERTY
TTIISAHLKFGKHAQVLHYFDQAISSPSVTPNVFLFSGVLTSCLRVSDEA
NALRVFQIMESKKVHPTRPILNVMLELALRSGSVRLGMKYVTDWAPRYDA
FCDVALYDKVIASWKKTSTNMSDTFHALYDLLQYMEASYNIKPNISTYNA
AIATLTAHGNIEQTEQILERMRRRDIVPDVCTYNILLHSHGKFGNIDKAL
ESIRTMKQNHVRPDQITYNILLQSFLSCGETEKVQSLFDEIENDEHLEID
AVGRCMQLKLYRIQRNTQAALQLHNATQRLGKPLDSKAYGLLLSILFEFG
EREKAISLFGWLVWTRQVACPIYNVMIGNVGKEENGHENCVKLFNHMKEK
RVLPDKITYTTMIRVFSRAGLLDRAFRLLGEMQDLGLAISDMYAWTSLMD
GCRRCGQWQRAVELLAFMKKHSSEYEHSLVPSPSTACYNAALYAAGIGGE
DWRTSVKIYESLLADQTQQPDYVTYSAMASIILRKRHRISEWHIVMQVSQ
ALEDLLLEHSKPPDETRKRRDTIEGLDRGLNKTMRKKLLSKMSSLKELIE
SVNNP*
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spliced messenger RNA

>Ggra7471.t2 ID=Ggra7471.t2|Name=Ggra7471.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2418bp|location=Sequence derived from alignment at tig00000102_pilon:132594..135011+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACCGCCTTGCCACTGCGAACGAGCTGTTCCTTTGACGTTCCTGTC
TCCATGTGTGCTTCCTCGCCTGCAGGAGTACTGCACCAGGAGCCCATCGC
TCAACCAGCGTTCAATACAAGCGCGACAAGCGCGCCCGCGCATCTCCCCA
GATATTCATCGTGCCACAACCCTGAGAAAGGCCGGTGAACTGCACAAAGC
ATATGACGTGTTGAACAGCGCCTTACCCCATGTACGCCAGCATGTGGCTT
ATAATCGTGAACTGATTCGTACCACTGCAGCCCTTATTGCGCAGAGCTCT
TCCGTCGAGAGTGCCGAGCAACTTTGGTTCGCACTGGAACGGATTTTGCG
AGGCGATTGTTCTCGCCCAGATTCTTTTACTTTCAACTCCCTTTTAAGCG
CTTTGCGTGTCTTAGATGCTGAGCGAAACCTTCCCCAACATGCCCAGCAG
CACGAGAAACTGGACGTTTTGCGCTTGGCGAAGGTGGTTTTTGATGCCAT
GATCGACTTGGGAGTGCGTCCTGATCAGTTTACTATGTCCATTCTGTTCA
ATATGTGTGCTTTCCGTGCTGACAAGCGCTATGCAGCTTTGTTTGAGAAA
CAAGCCGTTGACGATTTTGGCTTCAAGCCCAATATTGTATCTGGCACTTC
CTTGCTTGCGGCGTTCGCTAAATCTGCTTCCTTGGAAGAAGTCGATCGAG
TCGTCAATATCTTGCAACAGCAACAGGTTCCCTTTAACGAACGAACATAT
ACAACAATCATTTCCGCACACCTCAAATTTGGCAAGCATGCACAAGTCCT
CCACTACTTTGATCAAGCCATCAGTTCCCCATCTGTTACGCCGAATGTCT
TTCTCTTTTCCGGTGTACTAACCTCTTGCCTTCGCGTGAGTGACGAGGCC
AATGCGCTCCGCGTGTTTCAAATCATGGAAAGCAAAAAAGTGCATCCCAC
CAGACCCATACTCAACGTTATGCTAGAGCTAGCCCTTAGATCGGGAAGCG
TTCGTCTTGGTATGAAGTACGTCACAGATTGGGCTCCCAGGTACGATGCG
TTCTGTGATGTTGCTCTCTACGATAAGGTCATAGCATCATGGAAGAAAAC
CAGTACGAACATGTCCGATACATTTCATGCATTGTACGATCTGTTGCAGT
ACATGGAAGCCAGTTACAACATCAAACCGAATATATCCACGTACAATGCA
GCTATAGCCACCCTTACTGCTCACGGTAACATAGAACAAACTGAACAAAT
ATTGGAGCGCATGCGAAGAAGAGACATCGTTCCAGACGTCTGCACGTACA
ACATTTTGCTGCATTCGCATGGGAAGTTTGGAAACATTGATAAGGCACTC
GAAAGCATTCGCACAATGAAGCAGAATCATGTTAGACCCGATCAAATTAC
ATACAACATTCTCCTTCAATCGTTCCTGAGTTGTGGAGAAACTGAGAAAG
TACAAAGTCTCTTCGATGAGATTGAAAACGATGAGCACCTAGAGATAGAT
GCAGTTGGCAGGTGTATGCAACTCAAGCTGTACAGGATTCAGAGAAACAC
CCAGGCAGCACTCCAGTTACATAACGCGACACAACGACTTGGCAAACCCC
TTGATTCGAAAGCGTACGGTTTGTTGTTGTCGATTCTTTTCGAGTTTGGT
GAACGAGAGAAAGCCATATCACTTTTCGGGTGGCTAGTATGGACGCGTCA
AGTGGCATGTCCAATCTACAATGTAATGATAGGTAACGTTGGAAAGGAAG
AAAACGGGCACGAGAATTGCGTCAAGCTCTTTAATCATATGAAAGAAAAG
AGAGTTCTTCCCGACAAAATAACCTACACTACAATGATCCGCGTGTTTTC
GAGAGCCGGCTTACTAGATCGCGCTTTCCGCTTGCTCGGTGAAATGCAAG
ATCTGGGATTAGCAATTTCCGATATGTATGCCTGGACTTCTCTAATGGAT
GGATGCCGGAGGTGTGGACAATGGCAACGTGCAGTGGAACTTCTGGCATT
CATGAAGAAGCACAGCTCTGAGTATGAACACTCACTTGTCCCAAGCCCTT
CCACAGCGTGCTACAACGCTGCTCTATACGCAGCCGGAATCGGTGGTGAA
GACTGGAGGACTTCTGTGAAGATTTACGAATCGTTGCTCGCAGACCAGAC
ACAGCAACCTGATTATGTGACATATTCTGCCATGGCGAGCATAATACTGC
GCAAGAGGCATAGGATTTCGGAATGGCACATCGTGATGCAGGTTTCTCAA
GCTCTTGAAGATTTGTTGCTGGAACACAGCAAGCCTCCAGATGAAACTCG
AAAACGGCGAGATACCATTGAAGGTTTGGATCGAGGTTTGAATAAAACCA
TGAGAAAGAAGTTGTTGTCAAAAATGAGTAGCCTCAAGGAATTGATAGAA
TCCGTGAACAATCCTTAG
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protein sequence of Ggra7471.t2

>Ggra7471.t2 ID=Ggra7471.t2|Name=Ggra7471.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=806bp
MAPPCHCERAVPLTFLSPCVLPRLQEYCTRSPSLNQRSIQARQARPRISP
DIHRATTLRKAGELHKAYDVLNSALPHVRQHVAYNRELIRTTAALIAQSS
SVESAEQLWFALERILRGDCSRPDSFTFNSLLSALRVLDAERNLPQHAQQ
HEKLDVLRLAKVVFDAMIDLGVRPDQFTMSILFNMCAFRADKRYAALFEK
QAVDDFGFKPNIVSGTSLLAAFAKSASLEEVDRVVNILQQQQVPFNERTY
TTIISAHLKFGKHAQVLHYFDQAISSPSVTPNVFLFSGVLTSCLRVSDEA
NALRVFQIMESKKVHPTRPILNVMLELALRSGSVRLGMKYVTDWAPRYDA
FCDVALYDKVIASWKKTSTNMSDTFHALYDLLQYMEASYNIKPNISTYNA
AIATLTAHGNIEQTEQILERMRRRDIVPDVCTYNILLHSHGKFGNIDKAL
ESIRTMKQNHVRPDQITYNILLQSFLSCGETEKVQSLFDEIENDEHLEID
AVGRCMQLKLYRIQRNTQAALQLHNATQRLGKPLDSKAYGLLLSILFEFG
EREKAISLFGWLVWTRQVACPIYNVMIGNVGKEENGHENCVKLFNHMKEK
RVLPDKITYTTMIRVFSRAGLLDRAFRLLGEMQDLGLAISDMYAWTSLMD
GCRRCGQWQRAVELLAFMKKHSSEYEHSLVPSPSTACYNAALYAAGIGGE
DWRTSVKIYESLLADQTQQPDYVTYSAMASIILRKRHRISEWHIVMQVSQ
ALEDLLLEHSKPPDETRKRRDTIEGLDRGLNKTMRKKLLSKMSSLKELIE
SVNNP*
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mRNA from alignment at tig00000102_pilon:132594..135011+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7471.t2 ID=Ggra7471.t2|Name=Ggra7471.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2418bp|location=Sequence derived from alignment at tig00000102_pilon:132594..135011+ (Gracilaria gracilis GNS1m male)
ATGGCACCGCCTTGCCACTGCGAACGAGCTGTTCCTTTGACGTTCCTGTC TCCATGTGTGCTTCCTCGCCTGCAGGAGTACTGCACCAGGAGCCCATCGC TCAACCAGCGTTCAATACAAGCGCGACAAGCGCGCCCGCGCATCTCCCCA GATATTCATCGTGCCACAACCCTGAGAAAGGCCGGTGAACTGCACAAAGC ATATGACGTGTTGAACAGCGCCTTACCCCATGTACGCCAGCATGTGGCTT ATAATCGTGAACTGATTCGTACCACTGCAGCCCTTATTGCGCAGAGCTCT TCCGTCGAGAGTGCCGAGCAACTTTGGTTCGCACTGGAACGGATTTTGCG AGGCGATTGTTCTCGCCCAGATTCTTTTACTTTCAACTCCCTTTTAAGCG CTTTGCGTGTCTTAGATGCTGAGCGAAACCTTCCCCAACATGCCCAGCAG CACGAGAAACTGGACGTTTTGCGCTTGGCGAAGGTGGTTTTTGATGCCAT GATCGACTTGGGAGTGCGTCCTGATCAGTTTACTATGTCCATTCTGTTCA ATATGTGTGCTTTCCGTGCTGACAAGCGCTATGCAGCTTTGTTTGAGAAA CAAGCCGTTGACGATTTTGGCTTCAAGCCCAATATTGTATCTGGCACTTC CTTGCTTGCGGCGTTCGCTAAATCTGCTTCCTTGGAAGAAGTCGATCGAG TCGTCAATATCTTGCAACAGCAACAGGTTCCCTTTAACGAACGAACATAT ACAACAATCATTTCCGCACACCTCAAATTTGGCAAGCATGCACAAGTCCT CCACTACTTTGATCAAGCCATCAGTTCCCCATCTGTTACGCCGAATGTCT TTCTCTTTTCCGGTGTACTAACCTCTTGCCTTCGCGTGAGTGACGAGGCC AATGCGCTCCGCGTGTTTCAAATCATGGAAAGCAAAAAAGTGCATCCCAC CAGACCCATACTCAACGTTATGCTAGAGCTAGCCCTTAGATCGGGAAGCG TTCGTCTTGGTATGAAGTACGTCACAGATTGGGCTCCCAGGTACGATGCG TTCTGTGATGTTGCTCTCTACGATAAGGTCATAGCATCATGGAAGAAAAC CAGTACGAACATGTCCGATACATTTCATGCATTGTACGATCTGTTGCAGT ACATGGAAGCCAGTTACAACATCAAACCGAATATATCCACGTACAATGCA GCTATAGCCACCCTTACTGCTCACGGTAACATAGAACAAACTGAACAAAT ATTGGAGCGCATGCGAAGAAGAGACATCGTTCCAGACGTCTGCACGTACA ACATTTTGCTGCATTCGCATGGGAAGTTTGGAAACATTGATAAGGCACTC GAAAGCATTCGCACAATGAAGCAGAATCATGTTAGACCCGATCAAATTAC ATACAACATTCTCCTTCAATCGTTCCTGAGTTGTGGAGAAACTGAGAAAG TACAAAGTCTCTTCGATGAGATTGAAAACGATGAGCACCTAGAGATAGAT GCAGTTGGCAGGTGTATGCAACTCAAGCTGTACAGGATTCAGAGAAACAC CCAGGCAGCACTCCAGTTACATAACGCGACACAACGACTTGGCAAACCCC TTGATTCGAAAGCGTACGGTTTGTTGTTGTCGATTCTTTTCGAGTTTGGT GAACGAGAGAAAGCCATATCACTTTTCGGGTGGCTAGTATGGACGCGTCA AGTGGCATGTCCAATCTACAATGTAATGATAGGTAACGTTGGAAAGGAAG AAAACGGGCACGAGAATTGCGTCAAGCTCTTTAATCATATGAAAGAAAAG AGAGTTCTTCCCGACAAAATAACCTACACTACAATGATCCGCGTGTTTTC GAGAGCCGGCTTACTAGATCGCGCTTTCCGCTTGCTCGGTGAAATGCAAG ATCTGGGATTAGCAATTTCCGATATGTATGCCTGGACTTCTCTAATGGAT GGATGCCGGAGGTGTGGACAATGGCAACGTGCAGTGGAACTTCTGGCATT CATGAAGAAGCACAGCTCTGAGTATGAACACTCACTTGTCCCAAGCCCTT CCACAGCGTGCTACAACGCTGCTCTATACGCAGCCGGAATCGGTGGTGAA GACTGGAGGACTTCTGTGAAGATTTACGAATCGTTGCTCGCAGACCAGAC ACAGCAACCTGATTATGTGACATATTCTGCCATGGCGAGCATAATACTGC GCAAGAGGCATAGGATTTCGGAATGGCACATCGTGATGCAGGTTTCTCAA GCTCTTGAAGATTTGTTGCTGGAACACAGCAAGCCTCCAGATGAAACTCG AAAACGGCGAGATACCATTGAAGGTTTGGATCGAGGTTTGAATAAAACCA TGAGAAAGAAGTTGTTGTCAAAAATGAGTAGCCTCAAGGAATTGATAGAA TCCGTGAACAATCCTTAG
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Coding sequence (CDS) from alignment at tig00000102_pilon:132594..135011+

>Ggra7471.t2 ID=Ggra7471.t2|Name=Ggra7471.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2418bp|location=Sequence derived from alignment at tig00000102_pilon:132594..135011+ (Gracilaria gracilis GNS1m male)
ATGGCACCGCCTTGCCACTGCGAACGAGCTGTTCCTTTGACGTTCCTGTC
TCCATGTGTGCTTCCTCGCCTGCAGGAGTACTGCACCAGGAGCCCATCGC
TCAACCAGCGTTCAATACAAGCGCGACAAGCGCGCCCGCGCATCTCCCCA
GATATTCATCGTGCCACAACCCTGAGAAAGGCCGGTGAACTGCACAAAGC
ATATGACGTGTTGAACAGCGCCTTACCCCATGTACGCCAGCATGTGGCTT
ATAATCGTGAACTGATTCGTACCACTGCAGCCCTTATTGCGCAGAGCTCT
TCCGTCGAGAGTGCCGAGCAACTTTGGTTCGCACTGGAACGGATTTTGCG
AGGCGATTGTTCTCGCCCAGATTCTTTTACTTTCAACTCCCTTTTAAGCG
CTTTGCGTGTCTTAGATGCTGAGCGAAACCTTCCCCAACATGCCCAGCAG
CACGAGAAACTGGACGTTTTGCGCTTGGCGAAGGTGGTTTTTGATGCCAT
GATCGACTTGGGAGTGCGTCCTGATCAGTTTACTATGTCCATTCTGTTCA
ATATGTGTGCTTTCCGTGCTGACAAGCGCTATGCAGCTTTGTTTGAGAAA
CAAGCCGTTGACGATTTTGGCTTCAAGCCCAATATTGTATCTGGCACTTC
CTTGCTTGCGGCGTTCGCTAAATCTGCTTCCTTGGAAGAAGTCGATCGAG
TCGTCAATATCTTGCAACAGCAACAGGTTCCCTTTAACGAACGAACATAT
ACAACAATCATTTCCGCACACCTCAAATTTGGCAAGCATGCACAAGTCCT
CCACTACTTTGATCAAGCCATCAGTTCCCCATCTGTTACGCCGAATGTCT
TTCTCTTTTCCGGTGTACTAACCTCTTGCCTTCGCGTGAGTGACGAGGCC
AATGCGCTCCGCGTGTTTCAAATCATGGAAAGCAAAAAAGTGCATCCCAC
CAGACCCATACTCAACGTTATGCTAGAGCTAGCCCTTAGATCGGGAAGCG
TTCGTCTTGGTATGAAGTACGTCACAGATTGGGCTCCCAGGTACGATGCG
TTCTGTGATGTTGCTCTCTACGATAAGGTCATAGCATCATGGAAGAAAAC
CAGTACGAACATGTCCGATACATTTCATGCATTGTACGATCTGTTGCAGT
ACATGGAAGCCAGTTACAACATCAAACCGAATATATCCACGTACAATGCA
GCTATAGCCACCCTTACTGCTCACGGTAACATAGAACAAACTGAACAAAT
ATTGGAGCGCATGCGAAGAAGAGACATCGTTCCAGACGTCTGCACGTACA
ACATTTTGCTGCATTCGCATGGGAAGTTTGGAAACATTGATAAGGCACTC
GAAAGCATTCGCACAATGAAGCAGAATCATGTTAGACCCGATCAAATTAC
ATACAACATTCTCCTTCAATCGTTCCTGAGTTGTGGAGAAACTGAGAAAG
TACAAAGTCTCTTCGATGAGATTGAAAACGATGAGCACCTAGAGATAGAT
GCAGTTGGCAGGTGTATGCAACTCAAGCTGTACAGGATTCAGAGAAACAC
CCAGGCAGCACTCCAGTTACATAACGCGACACAACGACTTGGCAAACCCC
TTGATTCGAAAGCGTACGGTTTGTTGTTGTCGATTCTTTTCGAGTTTGGT
GAACGAGAGAAAGCCATATCACTTTTCGGGTGGCTAGTATGGACGCGTCA
AGTGGCATGTCCAATCTACAATGTAATGATAGGTAACGTTGGAAAGGAAG
AAAACGGGCACGAGAATTGCGTCAAGCTCTTTAATCATATGAAAGAAAAG
AGAGTTCTTCCCGACAAAATAACCTACACTACAATGATCCGCGTGTTTTC
GAGAGCCGGCTTACTAGATCGCGCTTTCCGCTTGCTCGGTGAAATGCAAG
ATCTGGGATTAGCAATTTCCGATATGTATGCCTGGACTTCTCTAATGGAT
GGATGCCGGAGGTGTGGACAATGGCAACGTGCAGTGGAACTTCTGGCATT
CATGAAGAAGCACAGCTCTGAGTATGAACACTCACTTGTCCCAAGCCCTT
CCACAGCGTGCTACAACGCTGCTCTATACGCAGCCGGAATCGGTGGTGAA
GACTGGAGGACTTCTGTGAAGATTTACGAATCGTTGCTCGCAGACCAGAC
ACAGCAACCTGATTATGTGACATATTCTGCCATGGCGAGCATAATACTGC
GCAAGAGGCATAGGATTTCGGAATGGCACATCGTGATGCAGGTTTCTCAA
GCTCTTGAAGATTTGTTGCTGGAACACAGCAAGCCTCCAGATGAAACTCG
AAAACGGCGAGATACCATTGAAGGTTTGGATCGAGGTTTGAATAAAACCA
TGAGAAAGAAGTTGTTGTCAAAAATGAGTAGCCTCAAGGAATTGATAGAA
TCCGTGAACAATCCTTAG
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