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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 71139.XP_010037928.1 |
| PFAMs | PPR,PPR_2,PPR_3 |
| Max annot lvl | 35493|Streptophyta |
| GOs | GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363 |
| Evalue | 6.8e-07 |
| EggNOG OGs | KOG4197@1|root,KOG4197@2759|Eukaryota,37R8Y@33090|Viridiplantae,3G8FN@35493|Streptophyta |
| Description | Pentatricopeptide repeat-containing protein At3g09650 |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra7471.t2.start1 | Ggra7471.t2.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000102_pilon 132594..132596 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra7471.t2.stop1 | Ggra7471.t2.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000102_pilon 135009..135011 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra7471.t2 ID=Ggra7471.t2|Name=Ggra7471.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=806bp MAPPCHCERAVPLTFLSPCVLPRLQEYCTRSPSLNQRSIQARQARPRISP DIHRATTLRKAGELHKAYDVLNSALPHVRQHVAYNRELIRTTAALIAQSS SVESAEQLWFALERILRGDCSRPDSFTFNSLLSALRVLDAERNLPQHAQQ HEKLDVLRLAKVVFDAMIDLGVRPDQFTMSILFNMCAFRADKRYAALFEK QAVDDFGFKPNIVSGTSLLAAFAKSASLEEVDRVVNILQQQQVPFNERTY TTIISAHLKFGKHAQVLHYFDQAISSPSVTPNVFLFSGVLTSCLRVSDEA NALRVFQIMESKKVHPTRPILNVMLELALRSGSVRLGMKYVTDWAPRYDA FCDVALYDKVIASWKKTSTNMSDTFHALYDLLQYMEASYNIKPNISTYNA AIATLTAHGNIEQTEQILERMRRRDIVPDVCTYNILLHSHGKFGNIDKAL ESIRTMKQNHVRPDQITYNILLQSFLSCGETEKVQSLFDEIENDEHLEID AVGRCMQLKLYRIQRNTQAALQLHNATQRLGKPLDSKAYGLLLSILFEFG EREKAISLFGWLVWTRQVACPIYNVMIGNVGKEENGHENCVKLFNHMKEK RVLPDKITYTTMIRVFSRAGLLDRAFRLLGEMQDLGLAISDMYAWTSLMD GCRRCGQWQRAVELLAFMKKHSSEYEHSLVPSPSTACYNAALYAAGIGGE DWRTSVKIYESLLADQTQQPDYVTYSAMASIILRKRHRISEWHIVMQVSQ ALEDLLLEHSKPPDETRKRRDTIEGLDRGLNKTMRKKLLSKMSSLKELIE SVNNP* back to topspliced messenger RNA >Ggra7471.t2 ID=Ggra7471.t2|Name=Ggra7471.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2418bp|location=Sequence derived from alignment at tig00000102_pilon:132594..135011+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCACCGCCTTGCCACTGCGAACGAGCTGTTCCTTTGACGTTCCTGTC TCCATGTGTGCTTCCTCGCCTGCAGGAGTACTGCACCAGGAGCCCATCGC TCAACCAGCGTTCAATACAAGCGCGACAAGCGCGCCCGCGCATCTCCCCA GATATTCATCGTGCCACAACCCTGAGAAAGGCCGGTGAACTGCACAAAGC ATATGACGTGTTGAACAGCGCCTTACCCCATGTACGCCAGCATGTGGCTT ATAATCGTGAACTGATTCGTACCACTGCAGCCCTTATTGCGCAGAGCTCT TCCGTCGAGAGTGCCGAGCAACTTTGGTTCGCACTGGAACGGATTTTGCG AGGCGATTGTTCTCGCCCAGATTCTTTTACTTTCAACTCCCTTTTAAGCG CTTTGCGTGTCTTAGATGCTGAGCGAAACCTTCCCCAACATGCCCAGCAG CACGAGAAACTGGACGTTTTGCGCTTGGCGAAGGTGGTTTTTGATGCCAT GATCGACTTGGGAGTGCGTCCTGATCAGTTTACTATGTCCATTCTGTTCA ATATGTGTGCTTTCCGTGCTGACAAGCGCTATGCAGCTTTGTTTGAGAAA CAAGCCGTTGACGATTTTGGCTTCAAGCCCAATATTGTATCTGGCACTTC CTTGCTTGCGGCGTTCGCTAAATCTGCTTCCTTGGAAGAAGTCGATCGAG TCGTCAATATCTTGCAACAGCAACAGGTTCCCTTTAACGAACGAACATAT ACAACAATCATTTCCGCACACCTCAAATTTGGCAAGCATGCACAAGTCCT CCACTACTTTGATCAAGCCATCAGTTCCCCATCTGTTACGCCGAATGTCT TTCTCTTTTCCGGTGTACTAACCTCTTGCCTTCGCGTGAGTGACGAGGCC AATGCGCTCCGCGTGTTTCAAATCATGGAAAGCAAAAAAGTGCATCCCAC CAGACCCATACTCAACGTTATGCTAGAGCTAGCCCTTAGATCGGGAAGCG TTCGTCTTGGTATGAAGTACGTCACAGATTGGGCTCCCAGGTACGATGCG TTCTGTGATGTTGCTCTCTACGATAAGGTCATAGCATCATGGAAGAAAAC CAGTACGAACATGTCCGATACATTTCATGCATTGTACGATCTGTTGCAGT ACATGGAAGCCAGTTACAACATCAAACCGAATATATCCACGTACAATGCA GCTATAGCCACCCTTACTGCTCACGGTAACATAGAACAAACTGAACAAAT ATTGGAGCGCATGCGAAGAAGAGACATCGTTCCAGACGTCTGCACGTACA ACATTTTGCTGCATTCGCATGGGAAGTTTGGAAACATTGATAAGGCACTC GAAAGCATTCGCACAATGAAGCAGAATCATGTTAGACCCGATCAAATTAC ATACAACATTCTCCTTCAATCGTTCCTGAGTTGTGGAGAAACTGAGAAAG TACAAAGTCTCTTCGATGAGATTGAAAACGATGAGCACCTAGAGATAGAT GCAGTTGGCAGGTGTATGCAACTCAAGCTGTACAGGATTCAGAGAAACAC CCAGGCAGCACTCCAGTTACATAACGCGACACAACGACTTGGCAAACCCC TTGATTCGAAAGCGTACGGTTTGTTGTTGTCGATTCTTTTCGAGTTTGGT GAACGAGAGAAAGCCATATCACTTTTCGGGTGGCTAGTATGGACGCGTCA AGTGGCATGTCCAATCTACAATGTAATGATAGGTAACGTTGGAAAGGAAG AAAACGGGCACGAGAATTGCGTCAAGCTCTTTAATCATATGAAAGAAAAG AGAGTTCTTCCCGACAAAATAACCTACACTACAATGATCCGCGTGTTTTC GAGAGCCGGCTTACTAGATCGCGCTTTCCGCTTGCTCGGTGAAATGCAAG ATCTGGGATTAGCAATTTCCGATATGTATGCCTGGACTTCTCTAATGGAT GGATGCCGGAGGTGTGGACAATGGCAACGTGCAGTGGAACTTCTGGCATT CATGAAGAAGCACAGCTCTGAGTATGAACACTCACTTGTCCCAAGCCCTT CCACAGCGTGCTACAACGCTGCTCTATACGCAGCCGGAATCGGTGGTGAA GACTGGAGGACTTCTGTGAAGATTTACGAATCGTTGCTCGCAGACCAGAC ACAGCAACCTGATTATGTGACATATTCTGCCATGGCGAGCATAATACTGC GCAAGAGGCATAGGATTTCGGAATGGCACATCGTGATGCAGGTTTCTCAA GCTCTTGAAGATTTGTTGCTGGAACACAGCAAGCCTCCAGATGAAACTCG AAAACGGCGAGATACCATTGAAGGTTTGGATCGAGGTTTGAATAAAACCA TGAGAAAGAAGTTGTTGTCAAAAATGAGTAGCCTCAAGGAATTGATAGAA TCCGTGAACAATCCTTAG back to topprotein sequence of Ggra7471.t2 >Ggra7471.t2 ID=Ggra7471.t2|Name=Ggra7471.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=806bp
MAPPCHCERAVPLTFLSPCVLPRLQEYCTRSPSLNQRSIQARQARPRISP DIHRATTLRKAGELHKAYDVLNSALPHVRQHVAYNRELIRTTAALIAQSS SVESAEQLWFALERILRGDCSRPDSFTFNSLLSALRVLDAERNLPQHAQQ HEKLDVLRLAKVVFDAMIDLGVRPDQFTMSILFNMCAFRADKRYAALFEK QAVDDFGFKPNIVSGTSLLAAFAKSASLEEVDRVVNILQQQQVPFNERTY TTIISAHLKFGKHAQVLHYFDQAISSPSVTPNVFLFSGVLTSCLRVSDEA NALRVFQIMESKKVHPTRPILNVMLELALRSGSVRLGMKYVTDWAPRYDA FCDVALYDKVIASWKKTSTNMSDTFHALYDLLQYMEASYNIKPNISTYNA AIATLTAHGNIEQTEQILERMRRRDIVPDVCTYNILLHSHGKFGNIDKAL ESIRTMKQNHVRPDQITYNILLQSFLSCGETEKVQSLFDEIENDEHLEID AVGRCMQLKLYRIQRNTQAALQLHNATQRLGKPLDSKAYGLLLSILFEFG EREKAISLFGWLVWTRQVACPIYNVMIGNVGKEENGHENCVKLFNHMKEK RVLPDKITYTTMIRVFSRAGLLDRAFRLLGEMQDLGLAISDMYAWTSLMD GCRRCGQWQRAVELLAFMKKHSSEYEHSLVPSPSTACYNAALYAAGIGGE DWRTSVKIYESLLADQTQQPDYVTYSAMASIILRKRHRISEWHIVMQVSQ ALEDLLLEHSKPPDETRKRRDTIEGLDRGLNKTMRKKLLSKMSSLKELIE SVNNP* back to topmRNA from alignment at tig00000102_pilon:132594..135011+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra7471.t2 ID=Ggra7471.t2|Name=Ggra7471.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2418bp|location=Sequence derived from alignment at tig00000102_pilon:132594..135011+ (Gracilaria gracilis GNS1m male) ATGGCACCGCCTTGCCACTGCGAACGAGCTGTTCCTTTGACGTTCCTGTC
TCCATGTGTGCTTCCTCGCCTGCAGGAGTACTGCACCAGGAGCCCATCGC
TCAACCAGCGTTCAATACAAGCGCGACAAGCGCGCCCGCGCATCTCCCCA
GATATTCATCGTGCCACAACCCTGAGAAAGGCCGGTGAACTGCACAAAGC
ATATGACGTGTTGAACAGCGCCTTACCCCATGTACGCCAGCATGTGGCTT
ATAATCGTGAACTGATTCGTACCACTGCAGCCCTTATTGCGCAGAGCTCT
TCCGTCGAGAGTGCCGAGCAACTTTGGTTCGCACTGGAACGGATTTTGCG
AGGCGATTGTTCTCGCCCAGATTCTTTTACTTTCAACTCCCTTTTAAGCG
CTTTGCGTGTCTTAGATGCTGAGCGAAACCTTCCCCAACATGCCCAGCAG
CACGAGAAACTGGACGTTTTGCGCTTGGCGAAGGTGGTTTTTGATGCCAT
GATCGACTTGGGAGTGCGTCCTGATCAGTTTACTATGTCCATTCTGTTCA
ATATGTGTGCTTTCCGTGCTGACAAGCGCTATGCAGCTTTGTTTGAGAAA
CAAGCCGTTGACGATTTTGGCTTCAAGCCCAATATTGTATCTGGCACTTC
CTTGCTTGCGGCGTTCGCTAAATCTGCTTCCTTGGAAGAAGTCGATCGAG
TCGTCAATATCTTGCAACAGCAACAGGTTCCCTTTAACGAACGAACATAT
ACAACAATCATTTCCGCACACCTCAAATTTGGCAAGCATGCACAAGTCCT
CCACTACTTTGATCAAGCCATCAGTTCCCCATCTGTTACGCCGAATGTCT
TTCTCTTTTCCGGTGTACTAACCTCTTGCCTTCGCGTGAGTGACGAGGCC
AATGCGCTCCGCGTGTTTCAAATCATGGAAAGCAAAAAAGTGCATCCCAC
CAGACCCATACTCAACGTTATGCTAGAGCTAGCCCTTAGATCGGGAAGCG
TTCGTCTTGGTATGAAGTACGTCACAGATTGGGCTCCCAGGTACGATGCG
TTCTGTGATGTTGCTCTCTACGATAAGGTCATAGCATCATGGAAGAAAAC
CAGTACGAACATGTCCGATACATTTCATGCATTGTACGATCTGTTGCAGT
ACATGGAAGCCAGTTACAACATCAAACCGAATATATCCACGTACAATGCA
GCTATAGCCACCCTTACTGCTCACGGTAACATAGAACAAACTGAACAAAT
ATTGGAGCGCATGCGAAGAAGAGACATCGTTCCAGACGTCTGCACGTACA
ACATTTTGCTGCATTCGCATGGGAAGTTTGGAAACATTGATAAGGCACTC
GAAAGCATTCGCACAATGAAGCAGAATCATGTTAGACCCGATCAAATTAC
ATACAACATTCTCCTTCAATCGTTCCTGAGTTGTGGAGAAACTGAGAAAG
TACAAAGTCTCTTCGATGAGATTGAAAACGATGAGCACCTAGAGATAGAT
GCAGTTGGCAGGTGTATGCAACTCAAGCTGTACAGGATTCAGAGAAACAC
CCAGGCAGCACTCCAGTTACATAACGCGACACAACGACTTGGCAAACCCC
TTGATTCGAAAGCGTACGGTTTGTTGTTGTCGATTCTTTTCGAGTTTGGT
GAACGAGAGAAAGCCATATCACTTTTCGGGTGGCTAGTATGGACGCGTCA
AGTGGCATGTCCAATCTACAATGTAATGATAGGTAACGTTGGAAAGGAAG
AAAACGGGCACGAGAATTGCGTCAAGCTCTTTAATCATATGAAAGAAAAG
AGAGTTCTTCCCGACAAAATAACCTACACTACAATGATCCGCGTGTTTTC
GAGAGCCGGCTTACTAGATCGCGCTTTCCGCTTGCTCGGTGAAATGCAAG
ATCTGGGATTAGCAATTTCCGATATGTATGCCTGGACTTCTCTAATGGAT
GGATGCCGGAGGTGTGGACAATGGCAACGTGCAGTGGAACTTCTGGCATT
CATGAAGAAGCACAGCTCTGAGTATGAACACTCACTTGTCCCAAGCCCTT
CCACAGCGTGCTACAACGCTGCTCTATACGCAGCCGGAATCGGTGGTGAA
GACTGGAGGACTTCTGTGAAGATTTACGAATCGTTGCTCGCAGACCAGAC
ACAGCAACCTGATTATGTGACATATTCTGCCATGGCGAGCATAATACTGC
GCAAGAGGCATAGGATTTCGGAATGGCACATCGTGATGCAGGTTTCTCAA
GCTCTTGAAGATTTGTTGCTGGAACACAGCAAGCCTCCAGATGAAACTCG
AAAACGGCGAGATACCATTGAAGGTTTGGATCGAGGTTTGAATAAAACCA
TGAGAAAGAAGTTGTTGTCAAAAATGAGTAGCCTCAAGGAATTGATAGAA
TCCGTGAACAATCCTTAG back to topCoding sequence (CDS) from alignment at tig00000102_pilon:132594..135011+ >Ggra7471.t2 ID=Ggra7471.t2|Name=Ggra7471.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2418bp|location=Sequence derived from alignment at tig00000102_pilon:132594..135011+ (Gracilaria gracilis GNS1m male) ATGGCACCGCCTTGCCACTGCGAACGAGCTGTTCCTTTGACGTTCCTGTC TCCATGTGTGCTTCCTCGCCTGCAGGAGTACTGCACCAGGAGCCCATCGC TCAACCAGCGTTCAATACAAGCGCGACAAGCGCGCCCGCGCATCTCCCCA GATATTCATCGTGCCACAACCCTGAGAAAGGCCGGTGAACTGCACAAAGC ATATGACGTGTTGAACAGCGCCTTACCCCATGTACGCCAGCATGTGGCTT ATAATCGTGAACTGATTCGTACCACTGCAGCCCTTATTGCGCAGAGCTCT TCCGTCGAGAGTGCCGAGCAACTTTGGTTCGCACTGGAACGGATTTTGCG AGGCGATTGTTCTCGCCCAGATTCTTTTACTTTCAACTCCCTTTTAAGCG CTTTGCGTGTCTTAGATGCTGAGCGAAACCTTCCCCAACATGCCCAGCAG CACGAGAAACTGGACGTTTTGCGCTTGGCGAAGGTGGTTTTTGATGCCAT GATCGACTTGGGAGTGCGTCCTGATCAGTTTACTATGTCCATTCTGTTCA ATATGTGTGCTTTCCGTGCTGACAAGCGCTATGCAGCTTTGTTTGAGAAA CAAGCCGTTGACGATTTTGGCTTCAAGCCCAATATTGTATCTGGCACTTC CTTGCTTGCGGCGTTCGCTAAATCTGCTTCCTTGGAAGAAGTCGATCGAG TCGTCAATATCTTGCAACAGCAACAGGTTCCCTTTAACGAACGAACATAT ACAACAATCATTTCCGCACACCTCAAATTTGGCAAGCATGCACAAGTCCT CCACTACTTTGATCAAGCCATCAGTTCCCCATCTGTTACGCCGAATGTCT TTCTCTTTTCCGGTGTACTAACCTCTTGCCTTCGCGTGAGTGACGAGGCC AATGCGCTCCGCGTGTTTCAAATCATGGAAAGCAAAAAAGTGCATCCCAC CAGACCCATACTCAACGTTATGCTAGAGCTAGCCCTTAGATCGGGAAGCG TTCGTCTTGGTATGAAGTACGTCACAGATTGGGCTCCCAGGTACGATGCG TTCTGTGATGTTGCTCTCTACGATAAGGTCATAGCATCATGGAAGAAAAC CAGTACGAACATGTCCGATACATTTCATGCATTGTACGATCTGTTGCAGT ACATGGAAGCCAGTTACAACATCAAACCGAATATATCCACGTACAATGCA GCTATAGCCACCCTTACTGCTCACGGTAACATAGAACAAACTGAACAAAT ATTGGAGCGCATGCGAAGAAGAGACATCGTTCCAGACGTCTGCACGTACA ACATTTTGCTGCATTCGCATGGGAAGTTTGGAAACATTGATAAGGCACTC GAAAGCATTCGCACAATGAAGCAGAATCATGTTAGACCCGATCAAATTAC ATACAACATTCTCCTTCAATCGTTCCTGAGTTGTGGAGAAACTGAGAAAG TACAAAGTCTCTTCGATGAGATTGAAAACGATGAGCACCTAGAGATAGAT GCAGTTGGCAGGTGTATGCAACTCAAGCTGTACAGGATTCAGAGAAACAC CCAGGCAGCACTCCAGTTACATAACGCGACACAACGACTTGGCAAACCCC TTGATTCGAAAGCGTACGGTTTGTTGTTGTCGATTCTTTTCGAGTTTGGT GAACGAGAGAAAGCCATATCACTTTTCGGGTGGCTAGTATGGACGCGTCA AGTGGCATGTCCAATCTACAATGTAATGATAGGTAACGTTGGAAAGGAAG AAAACGGGCACGAGAATTGCGTCAAGCTCTTTAATCATATGAAAGAAAAG AGAGTTCTTCCCGACAAAATAACCTACACTACAATGATCCGCGTGTTTTC GAGAGCCGGCTTACTAGATCGCGCTTTCCGCTTGCTCGGTGAAATGCAAG ATCTGGGATTAGCAATTTCCGATATGTATGCCTGGACTTCTCTAATGGAT GGATGCCGGAGGTGTGGACAATGGCAACGTGCAGTGGAACTTCTGGCATT CATGAAGAAGCACAGCTCTGAGTATGAACACTCACTTGTCCCAAGCCCTT CCACAGCGTGCTACAACGCTGCTCTATACGCAGCCGGAATCGGTGGTGAA GACTGGAGGACTTCTGTGAAGATTTACGAATCGTTGCTCGCAGACCAGAC ACAGCAACCTGATTATGTGACATATTCTGCCATGGCGAGCATAATACTGC GCAAGAGGCATAGGATTTCGGAATGGCACATCGTGATGCAGGTTTCTCAA GCTCTTGAAGATTTGTTGCTGGAACACAGCAAGCCTCCAGATGAAACTCG AAAACGGCGAGATACCATTGAAGGTTTGGATCGAGGTTTGAATAAAACCA TGAGAAAGAAGTTGTTGTCAAAAATGAGTAGCCTCAAGGAATTGATAGAA TCCGTGAACAATCCTTAG back to top
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