Ggra744.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra744.t2
Unique NameGgra744.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length525
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000164_piloncontigtig00000164_pilon:51008..52664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra744Ggra744Gracilaria gracilis GNS1m malegenetig00000164_pilon 51008..52918 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra744.t2Ggra744.t2Gracilaria gracilis GNS1m malepolypeptidetig00000164_pilon 51008..52664 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra744.t2.start1Ggra744.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000164_pilon 51008..51010 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra744.t2.CDS1Ggra744.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000164_pilon 51008..52559 +
Ggra744.t2.CDS2Ggra744.t2.CDS2Gracilaria gracilis GNS1m maleCDStig00000164_pilon 52642..52664 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra744.t2.exon1Ggra744.t2.exon1Gracilaria gracilis GNS1m maleexontig00000164_pilon 51008..52559 +
Ggra744.t2.exon2Ggra744.t2.exon2Gracilaria gracilis GNS1m maleexontig00000164_pilon 52642..52664 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra744.t2.intron1Ggra744.t2.intron1Gracilaria gracilis GNS1m maleintrontig00000164_pilon 52560..52641 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra744.t2.stop1Ggra744.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000164_pilon 52662..52664 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra744.t2 ID=Ggra744.t2|Name=Ggra744.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=525bp
MSPVPSDHSALPKQWAHEMALASSTLSSSQSPPRSPPHTLGGPAFDSQLD
AFLHRFQHQILAARALKDDLDRLESHQHPHYVAKKVAFKRHMEHIRSLFS
TEGEQFVDSLERRNPNLTMAACGQNTIELAQGIERLESAVKEEETKRAAA
ASHPPSSSTLPPPPPPPPNSLQPHLAAITPLSSPDRTAPPVSAVGHPLNN
LSSEETLQLMQSDIQALKLELMRLHRVKVSAASASLPPPYAPGSVSPHAD
TPAFTSSTVSPDAKSVNAPPIPASILANNNVSVVRVTGRSIAPNYVSHLE
QMKTRLQALEKKPLSRRAKSAARLGRTQTMSSMYEARAGDENQNPNVSAM
VTPPRGVRRQHRSVSTTSPVAASKTLLTPPPLQQLRSECSPRTTPSPVRL
ARERASGSPARLYFDAPEDLLSRPQSHAAARDIQRYSLKVSRRFGPNEME
MPAEPRAKSAVTVSPNRRRGAMQEGGKSVGNALTEVAAPLGAPSTIDTTG
SGGRVVEEIEGDMWVRKAMTLVEG*
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spliced messenger RNA

>Ggra744.t2 ID=Ggra744.t2|Name=Ggra744.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1575bp|location=Sequence derived from alignment at tig00000164_pilon:51008..52664+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCCCGTGCCGTCCGACCACTCAGCGCTGCCCAAGCAGTGGGCGCA
TGAAATGGCGCTCGCCTCCTCCACGCTGTCGTCGTCACAGTCGCCGCCGC
GCTCCCCACCCCATACCCTGGGTGGCCCCGCCTTCGACTCGCAGCTCGAC
GCCTTTCTGCACCGCTTCCAGCACCAAATCCTCGCCGCGCGCGCCCTCAA
GGACGATCTGGATCGCCTCGAGTCGCACCAACACCCGCACTACGTCGCCA
AAAAGGTCGCATTCAAGCGCCACATGGAGCACATCCGCTCCCTGTTCTCC
ACGGAGGGCGAGCAGTTTGTCGACAGTCTGGAGCGCCGCAACCCCAACCT
CACCATGGCCGCGTGCGGCCAGAACACCATCGAGCTCGCGCAGGGCATTG
AGCGCCTGGAGAGTGCCGTCAAGGAAGAGGAGACCAAACGAgccgccgcc
gcttcgcacccgccttcctcttccacgcttccgccgccgccgccgccgcc
gccCAATTCGTTGCAGCCGCATCTGGCCGCCATCACCCCACTGTCGTCGC
CGGATCGCACCGCGCCGCCGGTTTCCGCCGTGGGTCACCCGCTCAACAAC
CTCAGCTCGGAGGAGACGCTGCAGCTCATGCAAAGCGACATTCAGGCACT
CAAGCTGGAGCTCATGCGTCTGCACCGCGTCAAGGTAAGCGCCGCCTCCG
CCTCGTTGCCGCCGCCTTATGCACCCGGCTCCGTGTCGCCGCACGCCGAC
ACCCCGGCCTTCACCTCCTCCACCGTGTCGCCGGACGCCAAGTCCGTCAA
CGCGCCGCCCATTCCGGCCTCCATTCTGGCCAACAACAACGTCAGCGTCG
TACGCGTCACCGGCCGTTCCATCGCGCCCAACTACGTGTCGCACCTCGAG
CAGATGAAGACGCGCTTGCAGGCGCTGGAGAAGAAGCCGCTGTCGCGCCG
CGCCAAGTCCGCCGCCCGCTTGGGCCGTACGCAGACCATGAGCTCCATGT
ACGAGGCGCGCGCCGGCGATGAGAATCAGAACCCCAACGTGTCGGCAATG
GTCACGCCCCCCAGGGGCGTTCGCCGTCAGCACCGCTCGGTGTCGACCAC
TTCGCCGGTGGCGGCGTCGAAAACGCTGCTCACACCGCCGCCGTTGCAGC
AACTGCGCTCCGAGTGCTCGCCGCGCACCACGCCGTCGCCGGTGCGTCTT
GCACGCGAGCGCGCTTCGGGCAGTCCGGCTAGATTGTACTTTGACGCGCC
GGAGGATTTGTTGTCTCGACCGCAGTCGCACGCGGCCGCGCGCGATATTC
AGAGGTATAGTTTGAAGGTATCGCGCCGATTCGGCCCCAACGAGATGGAG
ATGCCGGCGGAGCCGCGCGCAAAGTCGGCCGTGACGGTGTCGCCCAACAG
ACGGCGCGGTGCGATGCAGGAAGGCGGCAAATCGGTAGGAAATGCATTGA
CGGAGGTGGCGGCGCCGCTGGGAGCGCCGTCAACGATTGACACCACCGGT
AGTGGTGGACGCGTGGTGGAGGAGATTGAGGGCGATATGTGGGTGAGAAA
GGCTATGACTCTGGTGGAGGGGTGA
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protein sequence of Ggra744.t2

>Ggra744.t2 ID=Ggra744.t2|Name=Ggra744.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=525bp
MSPVPSDHSALPKQWAHEMALASSTLSSSQSPPRSPPHTLGGPAFDSQLD
AFLHRFQHQILAARALKDDLDRLESHQHPHYVAKKVAFKRHMEHIRSLFS
TEGEQFVDSLERRNPNLTMAACGQNTIELAQGIERLESAVKEEETKRAAA
ASHPPSSSTLPPPPPPPPNSLQPHLAAITPLSSPDRTAPPVSAVGHPLNN
LSSEETLQLMQSDIQALKLELMRLHRVKVSAASASLPPPYAPGSVSPHAD
TPAFTSSTVSPDAKSVNAPPIPASILANNNVSVVRVTGRSIAPNYVSHLE
QMKTRLQALEKKPLSRRAKSAARLGRTQTMSSMYEARAGDENQNPNVSAM
VTPPRGVRRQHRSVSTTSPVAASKTLLTPPPLQQLRSECSPRTTPSPVRL
ARERASGSPARLYFDAPEDLLSRPQSHAAARDIQRYSLKVSRRFGPNEME
MPAEPRAKSAVTVSPNRRRGAMQEGGKSVGNALTEVAAPLGAPSTIDTTG
SGGRVVEEIEGDMWVRKAMTLVEG*
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mRNA from alignment at tig00000164_pilon:51008..52664+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra744.t2 ID=Ggra744.t2|Name=Ggra744.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1657bp|location=Sequence derived from alignment at tig00000164_pilon:51008..52664+ (Gracilaria gracilis GNS1m male)
ATGAGCCCCGTGCCGTCCGACCACTCAGCGCTGCCCAAGCAGTGGGCGCA
TGAAATGGCGCTCGCCTCCTCCACGCTGTCGTCGTCACAGTCGCCGCCGC
GCTCCCCACCCCATACCCTGGGTGGCCCCGCCTTCGACTCGCAGCTCGAC
GCCTTTCTGCACCGCTTCCAGCACCAAATCCTCGCCGCGCGCGCCCTCAA
GGACGATCTGGATCGCCTCGAGTCGCACCAACACCCGCACTACGTCGCCA
AAAAGGTCGCATTCAAGCGCCACATGGAGCACATCCGCTCCCTGTTCTCC
ACGGAGGGCGAGCAGTTTGTCGACAGTCTGGAGCGCCGCAACCCCAACCT
CACCATGGCCGCGTGCGGCCAGAACACCATCGAGCTCGCGCAGGGCATTG
AGCGCCTGGAGAGTGCCGTCAAGGAAGAGGAGACCAAACGAgccgccgcc
gcttcgcacccgccttcctcttccacgcttccgccgccgccgccgccgcc
gccCAATTCGTTGCAGCCGCATCTGGCCGCCATCACCCCACTGTCGTCGC
CGGATCGCACCGCGCCGCCGGTTTCCGCCGTGGGTCACCCGCTCAACAAC
CTCAGCTCGGAGGAGACGCTGCAGCTCATGCAAAGCGACATTCAGGCACT
CAAGCTGGAGCTCATGCGTCTGCACCGCGTCAAGGTAAGCGCCGCCTCCG
CCTCGTTGCCGCCGCCTTATGCACCCGGCTCCGTGTCGCCGCACGCCGAC
ACCCCGGCCTTCACCTCCTCCACCGTGTCGCCGGACGCCAAGTCCGTCAA
CGCGCCGCCCATTCCGGCCTCCATTCTGGCCAACAACAACGTCAGCGTCG
TACGCGTCACCGGCCGTTCCATCGCGCCCAACTACGTGTCGCACCTCGAG
CAGATGAAGACGCGCTTGCAGGCGCTGGAGAAGAAGCCGCTGTCGCGCCG
CGCCAAGTCCGCCGCCCGCTTGGGCCGTACGCAGACCATGAGCTCCATGT
ACGAGGCGCGCGCCGGCGATGAGAATCAGAACCCCAACGTGTCGGCAATG
GTCACGCCCCCCAGGGGCGTTCGCCGTCAGCACCGCTCGGTGTCGACCAC
TTCGCCGGTGGCGGCGTCGAAAACGCTGCTCACACCGCCGCCGTTGCAGC
AACTGCGCTCCGAGTGCTCGCCGCGCACCACGCCGTCGCCGGTGCGTCTT
GCACGCGAGCGCGCTTCGGGCAGTCCGGCTAGATTGTACTTTGACGCGCC
GGAGGATTTGTTGTCTCGACCGCAGTCGCACGCGGCCGCGCGCGATATTC
AGAGGTATAGTTTGAAGGTATCGCGCCGATTCGGCCCCAACGAGATGGAG
ATGCCGGCGGAGCCGCGCGCAAAGTCGGCCGTGACGGTGTCGCCCAACAG
ACGGCGCGGTGCGATGCAGGAAGGCGGCAAATCGGTAGGAAATGCATTGA
CGGAGGTGGCGGCGCCGCTGGGAGCGCCGTCAACGATTGACACCACCGGT
AGTGGTGGACGCGTGGTGGAGGAGATTGAGGGCGATATGTGGGTGAGAAA
GGGTGTGGTGTGGAAGCGGTGGAGGAGGCGGTATGCGAGCATTGTGTCGC
ATCCGTTCTTTGGCAAGGCGATCTGCCTGTTCAGCTATGACTCTGGTGGA
GGGGTGA
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Coding sequence (CDS) from alignment at tig00000164_pilon:51008..52664+

>Ggra744.t2 ID=Ggra744.t2|Name=Ggra744.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1575bp|location=Sequence derived from alignment at tig00000164_pilon:51008..52664+ (Gracilaria gracilis GNS1m male)
ATGAGCCCCGTGCCGTCCGACCACTCAGCGCTGCCCAAGCAGTGGGCGCA
TGAAATGGCGCTCGCCTCCTCCACGCTGTCGTCGTCACAGTCGCCGCCGC
GCTCCCCACCCCATACCCTGGGTGGCCCCGCCTTCGACTCGCAGCTCGAC
GCCTTTCTGCACCGCTTCCAGCACCAAATCCTCGCCGCGCGCGCCCTCAA
GGACGATCTGGATCGCCTCGAGTCGCACCAACACCCGCACTACGTCGCCA
AAAAGGTCGCATTCAAGCGCCACATGGAGCACATCCGCTCCCTGTTCTCC
ACGGAGGGCGAGCAGTTTGTCGACAGTCTGGAGCGCCGCAACCCCAACCT
CACCATGGCCGCGTGCGGCCAGAACACCATCGAGCTCGCGCAGGGCATTG
AGCGCCTGGAGAGTGCCGTCAAGGAAGAGGAGACCAAACGAgccgccgcc
gcttcgcacccgccttcctcttccacgcttccgccgccgccgccgccgcc
gccCAATTCGTTGCAGCCGCATCTGGCCGCCATCACCCCACTGTCGTCGC
CGGATCGCACCGCGCCGCCGGTTTCCGCCGTGGGTCACCCGCTCAACAAC
CTCAGCTCGGAGGAGACGCTGCAGCTCATGCAAAGCGACATTCAGGCACT
CAAGCTGGAGCTCATGCGTCTGCACCGCGTCAAGGTAAGCGCCGCCTCCG
CCTCGTTGCCGCCGCCTTATGCACCCGGCTCCGTGTCGCCGCACGCCGAC
ACCCCGGCCTTCACCTCCTCCACCGTGTCGCCGGACGCCAAGTCCGTCAA
CGCGCCGCCCATTCCGGCCTCCATTCTGGCCAACAACAACGTCAGCGTCG
TACGCGTCACCGGCCGTTCCATCGCGCCCAACTACGTGTCGCACCTCGAG
CAGATGAAGACGCGCTTGCAGGCGCTGGAGAAGAAGCCGCTGTCGCGCCG
CGCCAAGTCCGCCGCCCGCTTGGGCCGTACGCAGACCATGAGCTCCATGT
ACGAGGCGCGCGCCGGCGATGAGAATCAGAACCCCAACGTGTCGGCAATG
GTCACGCCCCCCAGGGGCGTTCGCCGTCAGCACCGCTCGGTGTCGACCAC
TTCGCCGGTGGCGGCGTCGAAAACGCTGCTCACACCGCCGCCGTTGCAGC
AACTGCGCTCCGAGTGCTCGCCGCGCACCACGCCGTCGCCGGTGCGTCTT
GCACGCGAGCGCGCTTCGGGCAGTCCGGCTAGATTGTACTTTGACGCGCC
GGAGGATTTGTTGTCTCGACCGCAGTCGCACGCGGCCGCGCGCGATATTC
AGAGGTATAGTTTGAAGGTATCGCGCCGATTCGGCCCCAACGAGATGGAG
ATGCCGGCGGAGCCGCGCGCAAAGTCGGCCGTGACGGTGTCGCCCAACAG
ACGGCGCGGTGCGATGCAGGAAGGCGGCAAATCGGTAGGAAATGCATTGA
CGGAGGTGGCGGCGCCGCTGGGAGCGCCGTCAACGATTGACACCACCGGT
AGTGGTGGACGCGTGGTGGAGGAGATTGAGGGCGATATGTGGGTGAGAAA
GGCTATGACTCTGGTGGAGGGGTGA
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