Ggra7422.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7422.t2
Unique NameGgra7422.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length580
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:1090745..1092484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708443.1
PFAMsHMGL-like,LeuA_dimer
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00470,RC02754
KEGG koko:K01649
KEGG ReactionR01213
KEGG Pathwayko00290,ko00620,ko01100,ko01110,ko01210,ko01230,map00290,map00620,map01100,map01110,map01210,map01230
KEGG ModuleM00432
Evalue1.14e-234
EggNOG OGsCOG0119@1|root,KOG2367@2759|Eukaryota
EC2.3.3.13
DescriptionBelongs to the alpha-IPM synthase homocitrate synthase family
COG categoryE
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7422Ggra7422Gracilaria gracilis GNS1m malegenetig00000871_pilon 1090745..1092484 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7422.t2.stop1Ggra7422.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000871_pilon 1090745..1090747 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7422.t2.CDS1Ggra7422.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000871_pilon 1090745..1092484 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7422.t2.exon1Ggra7422.t2.exon1Gracilaria gracilis GNS1m maleexontig00000871_pilon 1090745..1092484 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7422.t2.start1Ggra7422.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000871_pilon 1092482..1092484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7422.t2Ggra7422.t2Gracilaria gracilis GNS1m malepolypeptidetig00000871_pilon 1090745..1092484 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7422.t2 ID=Ggra7422.t2|Name=Ggra7422.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=580bp
MVAPARRKSEQVTPLTEQNSSTLVKQQKTVYVYDTTLRDGSQGEGISFTV
PDKIKIAHHLDQFGVHYIEGGWPGSNPKDEAFFAQCRDLQNAKLVAFGST
RYKGTTCEKDKNVLALLNADTPVVTLVGKAWNKQVTVVLEASLEENLAMI
SETVDYFKLRGREVMLDAEHFFDGYKADSSYALSCLNSAVQAGVDVLVLC
DTNGGTLPWEIEDITQVVVSKFPTVKIGIHCHNDMELAVSNSIAAVHAGA
SLVQGTINGFGERTGNANLMSIVPTLQLKMGYNCVGEQLSQLTKVSRYAD
EIANQPHVPSRPYVGSSSFAHKGGLHVAAVLKDANTYQHINPDMVGNERR
ILVSELSGRRNIITKAKELGLHPDGDEENVKEWNMRAKSVLAQVKELENK
GYSFEGAEASLELMLRRTLEGYRPPFELLDFSVSTDNKRVVYGNDTNAAP
RNESVTQASVKLALLGPKDGGDMCPTKVCFEIAEGNGPVDAVNGALQKCL
LPVYKPLRTVSLVDYRVRILDNASGTAAITRVMVEFEESSNGKRWTTVYA
HPNIIVASVNALMDGFEVAMWDQLPQCIL*
back to top

spliced messenger RNA

>Ggra7422.t2 ID=Ggra7422.t2|Name=Ggra7422.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1740bp|location=Sequence derived from alignment at tig00000871_pilon:1090745..1092484- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCGCCGGCTAGACGGAAGTCTGAACAGGTGACACCTTTAACGGA
GCAGAATTCTTCCACGCTTGTCAAGCAGCAGAAGACGGTGTACGTTTATG
ATACCACGTTAAGAGATGGGTCGCAAGGGGAGGGCATTTCATTTACGGTT
CCTGATAAGATCAAAATTGCGCACCATCTCGATCAATTCGGCGTACATTA
CATCGAGGGAGGGTGGCCGGGCAGTAACCCGAAGGATGAGGCGTTCTTTG
CTCAGTGCAGGGATCTCCAAAATGCCAAACTAGTGGCGTTTGGTAGCACT
CGCTATAAGGGTACCACCTGTGAGAAGGATAAGAACGTTCTTGCGTTGCT
CAACGCCGATACACCTGTTGTTACATTGGTAGGAAAGGCGTGGAACAAAC
AGGTCACCGTTGTTCTCGAAGCCAGTCTCGAAGAGAATCTCGCAATGATT
TCCGAGACGGTAGATTACTTTAAGCTCCGTGGGAGGGAAGTGATGCTTGA
TGCGGAACATTTCTTTGATGGGTACAAGGCCGACTCCAGTTATGCGTTAT
CGTGCTTGAATTCTGCGGTGCAGGCTGGAGTTGATGTACTCGTTCTCTGT
GATACGAACGGCGGAACTCTGCCTTGGGAAATTGAGGATATCACTCAAGT
AGTTGTTTCTAAGTTCCCAACTGTGAAGATTGGTATCCACTGTCATAATG
ATATGGAACTCGCCGTTTCCAATTCCATTGCGGCCGTACATGCTGGTGCT
TCTCTTGTTCAGGGAACCATCAACGGCTTTGGTGAACGCACTGGAAACGC
AAACCTAATGAGCATTGTGCCCACTCTCCAGCTTAAAATGGGCTATAATT
GTGTTGGAGAGCAATTGTCACAGTTAACAAAAGTATCAAGATATGCAGAT
GAAATTGCAAACCAGCCACACGTTCCCAGTCGACCGTATGTCGGTTCGTC
CAGCTTTGCACACAAGGGAGGACTTCATGTGGCAGCCGTTTTAAAGGATG
CGAACACATATCAACATATTAATCCCGATATGGTTGGGAATGAGCGACGC
ATTCTCGTATCTGAATTGTCTGGAAGGCGAAATATCATCACGAAGGCAAA
AGAGCTTGGGTTGCACCCAGATGGAGATGAGGAAAATGTGAAGGAATGGA
ACATGCGTGCGAAGTCTGTGCTAGCACAGGTTAAAGAACTGGAAAACAAG
GGTTACAGCTTCGAGGGTGCTGAAGCAAGCTTGGAACTGATGTTGCGACG
CACTTTGGAAGGTTACAGACCACCGTTTGAATTGCTTGACTTTTCTGTAT
CTACGGACAATAAGCGGGTTGTGTACGGGAATGACACTAATGCTGCTCCG
AGGAATGAGTCCGTGACACAGGCTTCAGTGAAGCTTGCGCTGCTGGGACC
AAAGGATGGCGGGGATATGTGTCCCACAAAGGTCTGTTTTGAGATTGCCG
AAGGTAATGGTCCTGTAGATGCTGTGAACGGTGCTCTTCAGAAGTGTCTT
CTCCCCGTCTACAAGCCGTTGCGAACAGTATCACTAGTAGATTACAGAGT
GCGTATTCTCGACAATGCAAGTGGGACAGCCGCCATAACGCGAGTAATGG
TAGAGTTCGAAGAGTCATCCAACGGGAAGAGATGGACGACTGTGTATGCT
CATCCTAACATTATTGTGGCTTCTGTGAACGCCTTGATGGACGGGTTTGA
GGTAGCCATGTGGGATCAATTGCCTCAGTGTATCTTGTAG
back to top

protein sequence of Ggra7422.t2

>Ggra7422.t2 ID=Ggra7422.t2|Name=Ggra7422.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=580bp
MVAPARRKSEQVTPLTEQNSSTLVKQQKTVYVYDTTLRDGSQGEGISFTV
PDKIKIAHHLDQFGVHYIEGGWPGSNPKDEAFFAQCRDLQNAKLVAFGST
RYKGTTCEKDKNVLALLNADTPVVTLVGKAWNKQVTVVLEASLEENLAMI
SETVDYFKLRGREVMLDAEHFFDGYKADSSYALSCLNSAVQAGVDVLVLC
DTNGGTLPWEIEDITQVVVSKFPTVKIGIHCHNDMELAVSNSIAAVHAGA
SLVQGTINGFGERTGNANLMSIVPTLQLKMGYNCVGEQLSQLTKVSRYAD
EIANQPHVPSRPYVGSSSFAHKGGLHVAAVLKDANTYQHINPDMVGNERR
ILVSELSGRRNIITKAKELGLHPDGDEENVKEWNMRAKSVLAQVKELENK
GYSFEGAEASLELMLRRTLEGYRPPFELLDFSVSTDNKRVVYGNDTNAAP
RNESVTQASVKLALLGPKDGGDMCPTKVCFEIAEGNGPVDAVNGALQKCL
LPVYKPLRTVSLVDYRVRILDNASGTAAITRVMVEFEESSNGKRWTTVYA
HPNIIVASVNALMDGFEVAMWDQLPQCIL*
back to top

mRNA from alignment at tig00000871_pilon:1090745..1092484-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7422.t2 ID=Ggra7422.t2|Name=Ggra7422.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1740bp|location=Sequence derived from alignment at tig00000871_pilon:1090745..1092484- (Gracilaria gracilis GNS1m male)
ATGGTTGCGCCGGCTAGACGGAAGTCTGAACAGGTGACACCTTTAACGGA
GCAGAATTCTTCCACGCTTGTCAAGCAGCAGAAGACGGTGTACGTTTATG
ATACCACGTTAAGAGATGGGTCGCAAGGGGAGGGCATTTCATTTACGGTT
CCTGATAAGATCAAAATTGCGCACCATCTCGATCAATTCGGCGTACATTA
CATCGAGGGAGGGTGGCCGGGCAGTAACCCGAAGGATGAGGCGTTCTTTG
CTCAGTGCAGGGATCTCCAAAATGCCAAACTAGTGGCGTTTGGTAGCACT
CGCTATAAGGGTACCACCTGTGAGAAGGATAAGAACGTTCTTGCGTTGCT
CAACGCCGATACACCTGTTGTTACATTGGTAGGAAAGGCGTGGAACAAAC
AGGTCACCGTTGTTCTCGAAGCCAGTCTCGAAGAGAATCTCGCAATGATT
TCCGAGACGGTAGATTACTTTAAGCTCCGTGGGAGGGAAGTGATGCTTGA
TGCGGAACATTTCTTTGATGGGTACAAGGCCGACTCCAGTTATGCGTTAT
CGTGCTTGAATTCTGCGGTGCAGGCTGGAGTTGATGTACTCGTTCTCTGT
GATACGAACGGCGGAACTCTGCCTTGGGAAATTGAGGATATCACTCAAGT
AGTTGTTTCTAAGTTCCCAACTGTGAAGATTGGTATCCACTGTCATAATG
ATATGGAACTCGCCGTTTCCAATTCCATTGCGGCCGTACATGCTGGTGCT
TCTCTTGTTCAGGGAACCATCAACGGCTTTGGTGAACGCACTGGAAACGC
AAACCTAATGAGCATTGTGCCCACTCTCCAGCTTAAAATGGGCTATAATT
GTGTTGGAGAGCAATTGTCACAGTTAACAAAAGTATCAAGATATGCAGAT
GAAATTGCAAACCAGCCACACGTTCCCAGTCGACCGTATGTCGGTTCGTC
CAGCTTTGCACACAAGGGAGGACTTCATGTGGCAGCCGTTTTAAAGGATG
CGAACACATATCAACATATTAATCCCGATATGGTTGGGAATGAGCGACGC
ATTCTCGTATCTGAATTGTCTGGAAGGCGAAATATCATCACGAAGGCAAA
AGAGCTTGGGTTGCACCCAGATGGAGATGAGGAAAATGTGAAGGAATGGA
ACATGCGTGCGAAGTCTGTGCTAGCACAGGTTAAAGAACTGGAAAACAAG
GGTTACAGCTTCGAGGGTGCTGAAGCAAGCTTGGAACTGATGTTGCGACG
CACTTTGGAAGGTTACAGACCACCGTTTGAATTGCTTGACTTTTCTGTAT
CTACGGACAATAAGCGGGTTGTGTACGGGAATGACACTAATGCTGCTCCG
AGGAATGAGTCCGTGACACAGGCTTCAGTGAAGCTTGCGCTGCTGGGACC
AAAGGATGGCGGGGATATGTGTCCCACAAAGGTCTGTTTTGAGATTGCCG
AAGGTAATGGTCCTGTAGATGCTGTGAACGGTGCTCTTCAGAAGTGTCTT
CTCCCCGTCTACAAGCCGTTGCGAACAGTATCACTAGTAGATTACAGAGT
GCGTATTCTCGACAATGCAAGTGGGACAGCCGCCATAACGCGAGTAATGG
TAGAGTTCGAAGAGTCATCCAACGGGAAGAGATGGACGACTGTGTATGCT
CATCCTAACATTATTGTGGCTTCTGTGAACGCCTTGATGGACGGGTTTGA
GGTAGCCATGTGGGATCAATTGCCTCAGTGTATCTTGTAG
back to top

Coding sequence (CDS) from alignment at tig00000871_pilon:1090745..1092484-

>Ggra7422.t2 ID=Ggra7422.t2|Name=Ggra7422.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1740bp|location=Sequence derived from alignment at tig00000871_pilon:1090745..1092484- (Gracilaria gracilis GNS1m male)
ATGGTTGCGCCGGCTAGACGGAAGTCTGAACAGGTGACACCTTTAACGGA
GCAGAATTCTTCCACGCTTGTCAAGCAGCAGAAGACGGTGTACGTTTATG
ATACCACGTTAAGAGATGGGTCGCAAGGGGAGGGCATTTCATTTACGGTT
CCTGATAAGATCAAAATTGCGCACCATCTCGATCAATTCGGCGTACATTA
CATCGAGGGAGGGTGGCCGGGCAGTAACCCGAAGGATGAGGCGTTCTTTG
CTCAGTGCAGGGATCTCCAAAATGCCAAACTAGTGGCGTTTGGTAGCACT
CGCTATAAGGGTACCACCTGTGAGAAGGATAAGAACGTTCTTGCGTTGCT
CAACGCCGATACACCTGTTGTTACATTGGTAGGAAAGGCGTGGAACAAAC
AGGTCACCGTTGTTCTCGAAGCCAGTCTCGAAGAGAATCTCGCAATGATT
TCCGAGACGGTAGATTACTTTAAGCTCCGTGGGAGGGAAGTGATGCTTGA
TGCGGAACATTTCTTTGATGGGTACAAGGCCGACTCCAGTTATGCGTTAT
CGTGCTTGAATTCTGCGGTGCAGGCTGGAGTTGATGTACTCGTTCTCTGT
GATACGAACGGCGGAACTCTGCCTTGGGAAATTGAGGATATCACTCAAGT
AGTTGTTTCTAAGTTCCCAACTGTGAAGATTGGTATCCACTGTCATAATG
ATATGGAACTCGCCGTTTCCAATTCCATTGCGGCCGTACATGCTGGTGCT
TCTCTTGTTCAGGGAACCATCAACGGCTTTGGTGAACGCACTGGAAACGC
AAACCTAATGAGCATTGTGCCCACTCTCCAGCTTAAAATGGGCTATAATT
GTGTTGGAGAGCAATTGTCACAGTTAACAAAAGTATCAAGATATGCAGAT
GAAATTGCAAACCAGCCACACGTTCCCAGTCGACCGTATGTCGGTTCGTC
CAGCTTTGCACACAAGGGAGGACTTCATGTGGCAGCCGTTTTAAAGGATG
CGAACACATATCAACATATTAATCCCGATATGGTTGGGAATGAGCGACGC
ATTCTCGTATCTGAATTGTCTGGAAGGCGAAATATCATCACGAAGGCAAA
AGAGCTTGGGTTGCACCCAGATGGAGATGAGGAAAATGTGAAGGAATGGA
ACATGCGTGCGAAGTCTGTGCTAGCACAGGTTAAAGAACTGGAAAACAAG
GGTTACAGCTTCGAGGGTGCTGAAGCAAGCTTGGAACTGATGTTGCGACG
CACTTTGGAAGGTTACAGACCACCGTTTGAATTGCTTGACTTTTCTGTAT
CTACGGACAATAAGCGGGTTGTGTACGGGAATGACACTAATGCTGCTCCG
AGGAATGAGTCCGTGACACAGGCTTCAGTGAAGCTTGCGCTGCTGGGACC
AAAGGATGGCGGGGATATGTGTCCCACAAAGGTCTGTTTTGAGATTGCCG
AAGGTAATGGTCCTGTAGATGCTGTGAACGGTGCTCTTCAGAAGTGTCTT
CTCCCCGTCTACAAGCCGTTGCGAACAGTATCACTAGTAGATTACAGAGT
GCGTATTCTCGACAATGCAAGTGGGACAGCCGCCATAACGCGAGTAATGG
TAGAGTTCGAAGAGTCATCCAACGGGAAGAGATGGACGACTGTGTATGCT
CATCCTAACATTATTGTGGCTTCTGTGAACGCCTTGATGGACGGGTTTGA
GGTAGCCATGTGGGATCAATTGCCTCAGTGTATCTTGTAG
back to top