Ggra7360.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7360.t1
Unique NameGgra7360.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length347
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:876472..877512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3649.evm.model.supercontig_85.5
PFAMsRhomboid,UBA
Max annot lvl35493|Streptophyta
Evalue2.47e-34
EggNOG OGsKOG2632@1|root,KOG2632@2759|Eukaryota,37HEA@33090|Viridiplantae,3GA9Q@35493|Streptophyta,3HSNU@3699|Brassicales
DescriptionDer1-like family
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7360Ggra7360Gracilaria gracilis GNS1m malegenetig00000871_pilon 876472..877512 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7360.t1.stop1Ggra7360.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000871_pilon 876472..876474 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7360.t1.CDS1Ggra7360.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000871_pilon 876472..877512 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7360.t1.exon1Ggra7360.t1.exon1Gracilaria gracilis GNS1m maleexontig00000871_pilon 876472..877512 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7360.t1.start1Ggra7360.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000871_pilon 877510..877512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7360.t1Ggra7360.t1Gracilaria gracilis GNS1m malepolypeptidetig00000871_pilon 876472..877512 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7360.t1 ID=Ggra7360.t1|Name=Ggra7360.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=347bp
MLLHLLGNPPFVTLAVFAACVLLFLPPLSSISTTATCLVPARVLPSLQLY
RIFTFAFFHAGFLHILFNMIAWVILANRFEATVGSLGAVYLIFVLFVPLS
ALLEIVVAFVIDALAATRFRNDCTVGISGVLFSILVVNIHVTGTASVSFF
GFFDIPAKWYPWLLAAILQLLSPQLSFLGHLGGILLGYALVLGYLRSLTP
SDHMLYQVEQKLNLTSVPLWKPNSSILQISYASRSFLPQTTPSDSASSSF
VDRFRQACQRLWAYVTAAFSSPGPQSFSGPGHTLGAGAQSAPAGRIPPHS
RLLREAAEQQSTPDALSNTAADANSTAVEQTDSDASQGEKLSNQVP*
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spliced messenger RNA

>Ggra7360.t1 ID=Ggra7360.t1|Name=Ggra7360.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1041bp|location=Sequence derived from alignment at tig00000871_pilon:876472..877512- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCTGCACCTGCTCGGTAATCCGCCCTTCGTCACGCTGGCCGTCTT
CGCCGCCTGCGTGCTGCTCTTCCTGCCGCCGCTTTCGTCCATCTCCACCA
CTGCCACATGCCTCGTCCCGGCCCGCGTGCTGCCGTCGCTGCAGCTGTAC
CGCATCTTCACCTTTGCCTTCTTCCATGCCGGTTTCCTGCACATCCTCTT
CAACATGATCGCCTGGGTCATACTGGCCAACCGCTTTGAAGCCACCGTCG
GATCGTTGGGTGCTGTGTACCTCATCTTCGTGCTCTTCGTTCCGCTCAGC
GCGCTGTTGGAGATCGTCGTCGCCTTCGTCATCGACGCCTTGGCTGCCAC
TCGCTTCCGCAACGATTGTACCGTCGGCATTTCCGGCGTGCTCTTCTCCA
TCCTCGTCGTCAACATACATGTCACCGGCACCGCCTCCGTCAGTTTCTTC
GGCTTCTTCGACATACCCGCCAAGTGGTACCCGTGGCTGCTGGCCGCCAT
TCTGCAGCTGCTCTCGCCACAGCTCAGTTTCCTGGGTCATCTGGGCGGCA
TTTTGCTCGGCTACGCCCTCGTGCTCGGCTACCTTCGCTCTCTAACTCCG
TCCGACCACATGCTGTACCAAGTCGAGCAAAAGCTCAATCTCACTTCCGT
CCCGTTGTGGAAGCCCAACTCCTCAATTTTGCAGATTTCGTACGCTTCGC
GATCGTTCCTTCCGCAAACCACCCCCTCCGATTCCGCCTCGTCTTCGTTT
GTGGACCGCTTTCGACAAGCGTGCCAGCGCCTTTGGGCGTACGTCACCGC
CGCCTTCTCGTCGCCGGGGCCGCAGTCCTTTTCGGGTCCTGGCCACACGC
TTGGTGCTGGTGCGCAGTCTGCGCCCGCTGGACGAATACCCCCGCATAGT
AGGCTGCTTCGGGAGGCTGCTGAGCAGCAATCTACGCCCGATGCGTTGTC
CAACACTGCCGCGGATGCTAATTCAACTGCAGTAGAGCAAACTGATTCTG
ATGCTTCTCAAGGTGAAAAATTGTCTAATCAAGTCCCATAA
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protein sequence of Ggra7360.t1

>Ggra7360.t1 ID=Ggra7360.t1|Name=Ggra7360.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=347bp
MLLHLLGNPPFVTLAVFAACVLLFLPPLSSISTTATCLVPARVLPSLQLY
RIFTFAFFHAGFLHILFNMIAWVILANRFEATVGSLGAVYLIFVLFVPLS
ALLEIVVAFVIDALAATRFRNDCTVGISGVLFSILVVNIHVTGTASVSFF
GFFDIPAKWYPWLLAAILQLLSPQLSFLGHLGGILLGYALVLGYLRSLTP
SDHMLYQVEQKLNLTSVPLWKPNSSILQISYASRSFLPQTTPSDSASSSF
VDRFRQACQRLWAYVTAAFSSPGPQSFSGPGHTLGAGAQSAPAGRIPPHS
RLLREAAEQQSTPDALSNTAADANSTAVEQTDSDASQGEKLSNQVP*
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mRNA from alignment at tig00000871_pilon:876472..877512-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7360.t1 ID=Ggra7360.t1|Name=Ggra7360.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1041bp|location=Sequence derived from alignment at tig00000871_pilon:876472..877512- (Gracilaria gracilis GNS1m male)
ATGCTGCTGCACCTGCTCGGTAATCCGCCCTTCGTCACGCTGGCCGTCTT
CGCCGCCTGCGTGCTGCTCTTCCTGCCGCCGCTTTCGTCCATCTCCACCA
CTGCCACATGCCTCGTCCCGGCCCGCGTGCTGCCGTCGCTGCAGCTGTAC
CGCATCTTCACCTTTGCCTTCTTCCATGCCGGTTTCCTGCACATCCTCTT
CAACATGATCGCCTGGGTCATACTGGCCAACCGCTTTGAAGCCACCGTCG
GATCGTTGGGTGCTGTGTACCTCATCTTCGTGCTCTTCGTTCCGCTCAGC
GCGCTGTTGGAGATCGTCGTCGCCTTCGTCATCGACGCCTTGGCTGCCAC
TCGCTTCCGCAACGATTGTACCGTCGGCATTTCCGGCGTGCTCTTCTCCA
TCCTCGTCGTCAACATACATGTCACCGGCACCGCCTCCGTCAGTTTCTTC
GGCTTCTTCGACATACCCGCCAAGTGGTACCCGTGGCTGCTGGCCGCCAT
TCTGCAGCTGCTCTCGCCACAGCTCAGTTTCCTGGGTCATCTGGGCGGCA
TTTTGCTCGGCTACGCCCTCGTGCTCGGCTACCTTCGCTCTCTAACTCCG
TCCGACCACATGCTGTACCAAGTCGAGCAAAAGCTCAATCTCACTTCCGT
CCCGTTGTGGAAGCCCAACTCCTCAATTTTGCAGATTTCGTACGCTTCGC
GATCGTTCCTTCCGCAAACCACCCCCTCCGATTCCGCCTCGTCTTCGTTT
GTGGACCGCTTTCGACAAGCGTGCCAGCGCCTTTGGGCGTACGTCACCGC
CGCCTTCTCGTCGCCGGGGCCGCAGTCCTTTTCGGGTCCTGGCCACACGC
TTGGTGCTGGTGCGCAGTCTGCGCCCGCTGGACGAATACCCCCGCATAGT
AGGCTGCTTCGGGAGGCTGCTGAGCAGCAATCTACGCCCGATGCGTTGTC
CAACACTGCCGCGGATGCTAATTCAACTGCAGTAGAGCAAACTGATTCTG
ATGCTTCTCAAGGTGAAAAATTGTCTAATCAAGTCCCATAA
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Coding sequence (CDS) from alignment at tig00000871_pilon:876472..877512-

>Ggra7360.t1 ID=Ggra7360.t1|Name=Ggra7360.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1041bp|location=Sequence derived from alignment at tig00000871_pilon:876472..877512- (Gracilaria gracilis GNS1m male)
ATGCTGCTGCACCTGCTCGGTAATCCGCCCTTCGTCACGCTGGCCGTCTT
CGCCGCCTGCGTGCTGCTCTTCCTGCCGCCGCTTTCGTCCATCTCCACCA
CTGCCACATGCCTCGTCCCGGCCCGCGTGCTGCCGTCGCTGCAGCTGTAC
CGCATCTTCACCTTTGCCTTCTTCCATGCCGGTTTCCTGCACATCCTCTT
CAACATGATCGCCTGGGTCATACTGGCCAACCGCTTTGAAGCCACCGTCG
GATCGTTGGGTGCTGTGTACCTCATCTTCGTGCTCTTCGTTCCGCTCAGC
GCGCTGTTGGAGATCGTCGTCGCCTTCGTCATCGACGCCTTGGCTGCCAC
TCGCTTCCGCAACGATTGTACCGTCGGCATTTCCGGCGTGCTCTTCTCCA
TCCTCGTCGTCAACATACATGTCACCGGCACCGCCTCCGTCAGTTTCTTC
GGCTTCTTCGACATACCCGCCAAGTGGTACCCGTGGCTGCTGGCCGCCAT
TCTGCAGCTGCTCTCGCCACAGCTCAGTTTCCTGGGTCATCTGGGCGGCA
TTTTGCTCGGCTACGCCCTCGTGCTCGGCTACCTTCGCTCTCTAACTCCG
TCCGACCACATGCTGTACCAAGTCGAGCAAAAGCTCAATCTCACTTCCGT
CCCGTTGTGGAAGCCCAACTCCTCAATTTTGCAGATTTCGTACGCTTCGC
GATCGTTCCTTCCGCAAACCACCCCCTCCGATTCCGCCTCGTCTTCGTTT
GTGGACCGCTTTCGACAAGCGTGCCAGCGCCTTTGGGCGTACGTCACCGC
CGCCTTCTCGTCGCCGGGGCCGCAGTCCTTTTCGGGTCCTGGCCACACGC
TTGGTGCTGGTGCGCAGTCTGCGCCCGCTGGACGAATACCCCCGCATAGT
AGGCTGCTTCGGGAGGCTGCTGAGCAGCAATCTACGCCCGATGCGTTGTC
CAACACTGCCGCGGATGCTAATTCAACTGCAGTAGAGCAAACTGATTCTG
ATGCTTCTCAAGGTGAAAAATTGTCTAATCAAGTCCCATAA
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