Ggra7359.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7359.t1
Unique NameGgra7359.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length159
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:875397..875983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707529.1
PFAMsCyt-b5
Max annot lvl2759|Eukaryota
KEGG rclassRC00917
KEGG koko:K00507
KEGG ReactionR02222
KEGG Pathwayko01040,ko01212,ko03320,ko04152,ko04212,map01040,map01212,map03320,map04152,map04212
Evalue1.2e-27
EggNOG OGsCOG5274@1|root,KOG0537@2759|Eukaryota
EC1.14.19.1
Descriptionheme binding
COG categoryCI
BRITEko00000,ko00001,ko01000,ko01004
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7359Ggra7359Gracilaria gracilis GNS1m malegenetig00000871_pilon 875397..875983 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7359.t1Ggra7359.t1Gracilaria gracilis GNS1m malepolypeptidetig00000871_pilon 875397..875983 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7359.t1.start1Ggra7359.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000871_pilon 875397..875399 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7359.t1.CDS1Ggra7359.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000871_pilon 875397..875556 +
Ggra7359.t1.CDS2Ggra7359.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000871_pilon 875667..875983 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7359.t1.exon1Ggra7359.t1.exon1Gracilaria gracilis GNS1m maleexontig00000871_pilon 875397..875556 +
Ggra7359.t1.exon2Ggra7359.t1.exon2Gracilaria gracilis GNS1m maleexontig00000871_pilon 875667..875983 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7359.t1.intron1Ggra7359.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000871_pilon 875557..875666 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7359.t1.stop1Ggra7359.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000871_pilon 875981..875983 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7359.t1 ID=Ggra7359.t1|Name=Ggra7359.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=159bp
MRSTEDLPAYCSIEVAKHSSANDAWLIVGGKVLDITSWLSEHPGGDDVLL
DLAGRDATREFEDVGHSSDARSRLDHLVIGTLRPATDEELRISRNTGNGS
EKQTGTGFENAEILREWLNERTRSLRQVGVIGAVSAGIIVSAIIFKRYAI
GWTTQGNR*
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spliced messenger RNA

>Ggra7359.t1 ID=Ggra7359.t1|Name=Ggra7359.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=477bp|location=Sequence derived from alignment at tig00000871_pilon:875397..875983+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTTCCACAGAGGACCTACCAGCGTATTGTTCAATTGAAGTAGCAAA
GCATTCCTCTGCAAACGATGCATGGCTGATTGTGGGAGGAAAGGTGCTTG
ACATAACGTCATGGTTGAGCGAACATCCTGGTGGAGATGACGTACTTCTT
GACCTGGCTGGGAGGGACGCCACGCGGGAGTTTGAAGACGTCGGACATTC
AAGCGACGCAAGGTCTCGTCTCGACCACTTGGTCATTGGCACATTACGGC
CGGCAACGGATGAGGAATTGCGCATATCCAGAAACACTGGAAACGGGTCG
GAAAAGCAAACCGGAACCGGCTTTGAGAATGCCGAAATTCTGCGCGAATG
GCTCAATGAAAGGACGCGCTCTCTTCGACAGGTGGGCGTGATAGGAGCAG
TAAGCGCTGGAATTATTGTGTCGGCGATCATCTTCAAGCGCTATGCAATT
GGGTGGACCACACAAGGAAACCGATGA
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protein sequence of Ggra7359.t1

>Ggra7359.t1 ID=Ggra7359.t1|Name=Ggra7359.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=159bp
MRSTEDLPAYCSIEVAKHSSANDAWLIVGGKVLDITSWLSEHPGGDDVLL
DLAGRDATREFEDVGHSSDARSRLDHLVIGTLRPATDEELRISRNTGNGS
EKQTGTGFENAEILREWLNERTRSLRQVGVIGAVSAGIIVSAIIFKRYAI
GWTTQGNR*
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mRNA from alignment at tig00000871_pilon:875397..875983+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7359.t1 ID=Ggra7359.t1|Name=Ggra7359.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=587bp|location=Sequence derived from alignment at tig00000871_pilon:875397..875983+ (Gracilaria gracilis GNS1m male)
ATGCGTTCCACAGAGGACCTACCAGCGTATTGTTCAATTGAAGTAGCAAA
GCATTCCTCTGCAAACGATGCATGGCTGATTGTGGGAGGAAAGGTGCTTG
ACATAACGTCATGGTTGAGCGAACATCCTGGTGGAGATGACGTACTTCTT
GACCTGGCTGGTGAGTTGAGCGCATCACAGCTCAGAGAACAGGTGCACGT
AATATGTATGGCGCAGTTAATGAACGAGGTATACTAACTCTTTTATTTCC
GTTTCTGTTTTATTCATTAGGGAGGGACGCCACGCGGGAGTTTGAAGACG
TCGGACATTCAAGCGACGCAAGGTCTCGTCTCGACCACTTGGTCATTGGC
ACATTACGGCCGGCAACGGATGAGGAATTGCGCATATCCAGAAACACTGG
AAACGGGTCGGAAAAGCAAACCGGAACCGGCTTTGAGAATGCCGAAATTC
TGCGCGAATGGCTCAATGAAAGGACGCGCTCTCTTCGACAGGTGGGCGTG
ATAGGAGCAGTAAGCGCTGGAATTATTGTGTCGGCGATCATCTTCAAGCG
CTATGCAATTGGGTGGACCACACAAGGAAACCGATGA
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Coding sequence (CDS) from alignment at tig00000871_pilon:875397..875983+

>Ggra7359.t1 ID=Ggra7359.t1|Name=Ggra7359.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=477bp|location=Sequence derived from alignment at tig00000871_pilon:875397..875983+ (Gracilaria gracilis GNS1m male)
ATGCGTTCCACAGAGGACCTACCAGCGTATTGTTCAATTGAAGTAGCAAA
GCATTCCTCTGCAAACGATGCATGGCTGATTGTGGGAGGAAAGGTGCTTG
ACATAACGTCATGGTTGAGCGAACATCCTGGTGGAGATGACGTACTTCTT
GACCTGGCTGGGAGGGACGCCACGCGGGAGTTTGAAGACGTCGGACATTC
AAGCGACGCAAGGTCTCGTCTCGACCACTTGGTCATTGGCACATTACGGC
CGGCAACGGATGAGGAATTGCGCATATCCAGAAACACTGGAAACGGGTCG
GAAAAGCAAACCGGAACCGGCTTTGAGAATGCCGAAATTCTGCGCGAATG
GCTCAATGAAAGGACGCGCTCTCTTCGACAGGTGGGCGTGATAGGAGCAG
TAAGCGCTGGAATTATTGTGTCGGCGATCATCTTCAAGCGCTATGCAATT
GGGTGGACCACACAAGGAAACCGATGA
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