Ggra7343.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7343.t1
Unique NameGgra7343.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length268
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:832893..833696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7343Ggra7343Gracilaria gracilis GNS1m malegenetig00000871_pilon 832893..833696 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7343.t1.stop1Ggra7343.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000871_pilon 832893..832895 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7343.t1.CDS1Ggra7343.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000871_pilon 832893..833696 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7343.t1.exon1Ggra7343.t1.exon1Gracilaria gracilis GNS1m maleexontig00000871_pilon 832893..833696 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7343.t1.start1Ggra7343.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000871_pilon 833694..833696 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7343.t1Ggra7343.t1Gracilaria gracilis GNS1m malepolypeptidetig00000871_pilon 832893..833696 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7343.t1 ID=Ggra7343.t1|Name=Ggra7343.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=268bp
MSRKRPLQNADTSSTKRYLNGALAAELRGLRISRTTDASQPSQKNAFGVT
VPSSPFYSNNFSPNNGVPSFTQTPSGVVFGSDFAGSLPAEPLPDLKQNQL
DPSHVVTNPDSPDSSSSSTPMDDDDTAPQSIVNVSVDNPMEVLPVEEYEA
FPSSENRLVVYRPPIRTRGNVVSRVNAVLPDGSYILRNPKTDDWMFTARN
RSESAKRKLALVRWSGDPHKKLRESFHQPSRVIPMPWHDNPTEVTVAEPP
DEAPMAQEEDMEIEEIA*
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spliced messenger RNA

>Ggra7343.t1 ID=Ggra7343.t1|Name=Ggra7343.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00000871_pilon:832893..833696- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCGTAAGCGTCCTCTTCAAAATGCGGACACTTCCAGCACTAAGCG
TTATCTCAATGGAGCTCTGGCTGCCGAACTCAGAGGGCTAAGAATTTCCA
GAACGACCGATGCATCTCAACCTTCGCAGAAGAATGCATTTGGAGTTACA
GTTCCTTCATCTCCGTTCTATTCAAACAACTTCAGTCCGAACAACGGTGT
GCCAAGTTTTACTCAAACCCCGAGTGGCGTTGTCTTCGGGTCTGATTTCG
CGGGTTCTTTACCGGCTGAGCCTCTTCCTGACCTAAAGCAAAACCAATTG
GATCCAAGCCATGTTGTTACTAATCCAGACTCGCCTGATTCGTCATCAAG
CTCCACACCCATGGATGATGATGACACTGCGCCCCAATCTATTGTGAACG
TTTCTGTCGACAATCCCATGGAGGTACTGCCCGTAGAAGAGTACGAGGCA
TTCCCAAGTAGCGAAAATAGACTGGTCGTCTACCGTCCTCCTATTCGAAC
AAGGGGTAACGTTGTATCCCGGGTTAACGCTGTTTTGCCGGATGGAAGTT
ACATTCTTCGAAATCCGAAAACTGACGACTGGATGTTTACTGCACGAAAC
CGCTCGGAGAGCGCCAAGAGAAAACTTGCACTGGTGCGGTGGAGTGGTGA
TCCACACAAGAAACTACGTGAATCTTTTCATCAACCGAGTAGAGTCATTC
CAATGCCTTGGCATGACAATCCAACGGAAGTTACGGTTGCAGAGCCCCCA
GACGAAGCCCCAATGGCCCAAGAAGAGGACATGGAAATTGAAGAAATCGC
ATAG
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protein sequence of Ggra7343.t1

>Ggra7343.t1 ID=Ggra7343.t1|Name=Ggra7343.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=268bp
MSRKRPLQNADTSSTKRYLNGALAAELRGLRISRTTDASQPSQKNAFGVT
VPSSPFYSNNFSPNNGVPSFTQTPSGVVFGSDFAGSLPAEPLPDLKQNQL
DPSHVVTNPDSPDSSSSSTPMDDDDTAPQSIVNVSVDNPMEVLPVEEYEA
FPSSENRLVVYRPPIRTRGNVVSRVNAVLPDGSYILRNPKTDDWMFTARN
RSESAKRKLALVRWSGDPHKKLRESFHQPSRVIPMPWHDNPTEVTVAEPP
DEAPMAQEEDMEIEEIA*
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mRNA from alignment at tig00000871_pilon:832893..833696-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7343.t1 ID=Ggra7343.t1|Name=Ggra7343.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00000871_pilon:832893..833696- (Gracilaria gracilis GNS1m male)
ATGTCTCGTAAGCGTCCTCTTCAAAATGCGGACACTTCCAGCACTAAGCG
TTATCTCAATGGAGCTCTGGCTGCCGAACTCAGAGGGCTAAGAATTTCCA
GAACGACCGATGCATCTCAACCTTCGCAGAAGAATGCATTTGGAGTTACA
GTTCCTTCATCTCCGTTCTATTCAAACAACTTCAGTCCGAACAACGGTGT
GCCAAGTTTTACTCAAACCCCGAGTGGCGTTGTCTTCGGGTCTGATTTCG
CGGGTTCTTTACCGGCTGAGCCTCTTCCTGACCTAAAGCAAAACCAATTG
GATCCAAGCCATGTTGTTACTAATCCAGACTCGCCTGATTCGTCATCAAG
CTCCACACCCATGGATGATGATGACACTGCGCCCCAATCTATTGTGAACG
TTTCTGTCGACAATCCCATGGAGGTACTGCCCGTAGAAGAGTACGAGGCA
TTCCCAAGTAGCGAAAATAGACTGGTCGTCTACCGTCCTCCTATTCGAAC
AAGGGGTAACGTTGTATCCCGGGTTAACGCTGTTTTGCCGGATGGAAGTT
ACATTCTTCGAAATCCGAAAACTGACGACTGGATGTTTACTGCACGAAAC
CGCTCGGAGAGCGCCAAGAGAAAACTTGCACTGGTGCGGTGGAGTGGTGA
TCCACACAAGAAACTACGTGAATCTTTTCATCAACCGAGTAGAGTCATTC
CAATGCCTTGGCATGACAATCCAACGGAAGTTACGGTTGCAGAGCCCCCA
GACGAAGCCCCAATGGCCCAAGAAGAGGACATGGAAATTGAAGAAATCGC
ATAG
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Coding sequence (CDS) from alignment at tig00000871_pilon:832893..833696-

>Ggra7343.t1 ID=Ggra7343.t1|Name=Ggra7343.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=804bp|location=Sequence derived from alignment at tig00000871_pilon:832893..833696- (Gracilaria gracilis GNS1m male)
ATGTCTCGTAAGCGTCCTCTTCAAAATGCGGACACTTCCAGCACTAAGCG
TTATCTCAATGGAGCTCTGGCTGCCGAACTCAGAGGGCTAAGAATTTCCA
GAACGACCGATGCATCTCAACCTTCGCAGAAGAATGCATTTGGAGTTACA
GTTCCTTCATCTCCGTTCTATTCAAACAACTTCAGTCCGAACAACGGTGT
GCCAAGTTTTACTCAAACCCCGAGTGGCGTTGTCTTCGGGTCTGATTTCG
CGGGTTCTTTACCGGCTGAGCCTCTTCCTGACCTAAAGCAAAACCAATTG
GATCCAAGCCATGTTGTTACTAATCCAGACTCGCCTGATTCGTCATCAAG
CTCCACACCCATGGATGATGATGACACTGCGCCCCAATCTATTGTGAACG
TTTCTGTCGACAATCCCATGGAGGTACTGCCCGTAGAAGAGTACGAGGCA
TTCCCAAGTAGCGAAAATAGACTGGTCGTCTACCGTCCTCCTATTCGAAC
AAGGGGTAACGTTGTATCCCGGGTTAACGCTGTTTTGCCGGATGGAAGTT
ACATTCTTCGAAATCCGAAAACTGACGACTGGATGTTTACTGCACGAAAC
CGCTCGGAGAGCGCCAAGAGAAAACTTGCACTGGTGCGGTGGAGTGGTGA
TCCACACAAGAAACTACGTGAATCTTTTCATCAACCGAGTAGAGTCATTC
CAATGCCTTGGCATGACAATCCAACGGAAGTTACGGTTGCAGAGCCCCCA
GACGAAGCCCCAATGGCCCAAGAAGAGGACATGGAAATTGAAGAAATCGC
ATAG
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