Ggra733.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra733.t1
Unique NameGgra733.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length516
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000204_piloncontigtig00000204_pilon:43936..46671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45351.EDO44349
PFAMsHH_signal,Hint
Max annot lvl33208|Metazoa
Evalue4.32e-11
EggNOG OGsKOG3638@1|root,KOG3638@2759|Eukaryota,38EJM@33154|Opisthokonta,3BA86@33208|Metazoa
Descriptionintein-mediated protein splicing
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra733Ggra733Gracilaria gracilis GNS1m malegenetig00000204_pilon 43936..46671 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra733.t1Ggra733.t1Gracilaria gracilis GNS1m malepolypeptidetig00000204_pilon 43936..46671 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra733.t1.start1Ggra733.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000204_pilon 43936..43938 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra733.t1.CDS1Ggra733.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000204_pilon 43936..44661 +
Ggra733.t1.CDS2Ggra733.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000204_pilon 44752..44788 +
Ggra733.t1.CDS3Ggra733.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000204_pilon 44945..45108 +
Ggra733.t1.CDS4Ggra733.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000204_pilon 46051..46671 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra733.t1.exon1Ggra733.t1.exon1Gracilaria gracilis GNS1m maleexontig00000204_pilon 43936..44661 +
Ggra733.t1.exon2Ggra733.t1.exon2Gracilaria gracilis GNS1m maleexontig00000204_pilon 44752..44788 +
Ggra733.t1.exon3Ggra733.t1.exon3Gracilaria gracilis GNS1m maleexontig00000204_pilon 44945..45108 +
Ggra733.t1.exon4Ggra733.t1.exon4Gracilaria gracilis GNS1m maleexontig00000204_pilon 46051..46671 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra733.t1.intron1Ggra733.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000204_pilon 44662..44751 +
Ggra733.t1.intron2Ggra733.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000204_pilon 44789..44944 +
Ggra733.t1.intron3Ggra733.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000204_pilon 45109..46050 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra733.t1.stop1Ggra733.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000204_pilon 46669..46671 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra733.t1 ID=Ggra733.t1|Name=Ggra733.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=516bp
MSVQFSVLCFMLVLLLAGNQAVPKPTTFSGPLQLENTSVRAFTPSEFTAG
YELMVQYRHGSVPSCPHRIQYTGTPTEEDSQLLLKHTDMKISESDTLNPI
NCTDNGVQRLALSTKLRGQTLADFVEQVDKSLDKSILYKSVAQQLSGARY
YVSVEDSVRVCGQGWFSSAETYFFFDESKLVQLQVVKKVIQDDPVVITLP
LIGNIRYMVVAREGTTCIYRVESDVQSIIRNSPRPSDSPSVTPSPSPSTS
PIPPMPSPSASVTTSASAAPSPSASMVPTPSSSSVASPSPSGSSSVLPAP
SSSASISPSGNNDENNIDGDDRGENSVDGSSTCFPASAKVRTRNGYKKME
DLRMGEEVVSDRGLERIMLFTHENKWIRAEFVRLYAGNESLTATGGHMIY
VRNGLRRAREVEVGDMLRKVDGDARVWKKEWVIERGLFNPHTEGGNIVVN
GFVTSCYTESVETITAHALLSVVRLLGRWRRMARLMGALGSGIEYMARFC
GTVARTAGAASSALA*
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spliced messenger RNA

>Ggra733.t1 ID=Ggra733.t1|Name=Ggra733.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1548bp|location=Sequence derived from alignment at tig00000204_pilon:43936..46671+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGTCCAGTTCTCAGTTCTATGCTTCATGCTTGTTTTGCTCCTCGC
AGGCAATCAAGCTGTTCCAAAGCCTACAACATTTTCCGGACCCCTTCAAC
TGGAAAACACCTCTGTTCGAGCCTTTACGCCCTCAGAGTTCACGGCCGGC
TACGAGCTCATGGTTCAATATCGACACGGTTCGGTTCCGTCCTGCCCGCA
CAGAATCCAGTACACAGGAACTCCAACAGAAGAAGATTCTCAACTTCTCC
TAAAACATACAGATATGAAAATATCTGAGTCTGATACATTGAACCCAATC
AACTGTACAGATAACGGAGTGCAACGACTAGCGCTGTCAACCAAGCTCCG
AGGCCAAACTCTTGCCGACTTCGTGGAACAAGTAGACAAAAGCCTTGACA
AGTCAATCTTGTACAAAAGCGTTGCTCAACAGCTTTCCGGGGCAAGATAT
TATGTATCAGTGGAAGATTCTGTGCGCGTCTGTGGTCAGGGCTGGTTTAG
TTCAGCGGAAACCTACTTCTTCTTTGATGAATCCAAATTGGTTCAATTGC
AGGTTGTGAAGAAAGTTATTCAAGATGATCCGGTTGTAATCACTTTGCCA
CTTATAGGAAATATTCGATACATGGTGGTAGCCAGGGAAGGAACCACATG
TATCTATCGGGTTGAGTCTGATGTCCAGAGCATCATCAGGAATTCGCCAA
GGCCGTCGGATTCTCCGTCTGTAACGCCGTCCCCGTCGCCGTCAACATCT
CCGATACCACCCATGCCCTCTCCATCCGCCTCTGTTACTACCTCTGCAAG
CGCAGCACCATCTCCAAGCGCTTCAATGGTACCCACACCGAGCTCCAGTT
CAGTGGCGTCACCGTCTCCCTCTGGTTCCAGTAGCGTACTACCTGCCCCA
TCTTCGTCGGCCTCCATTTCTCCATCTGGAAACAACGATGAGAACAACAT
CGATGGAGATGATCGGGGTGAAAATAGCGTAGATGGTAGTAGTACATGCT
TCCCAGCCTCAGCCAAGGTGAGGACAAGGAATGGATATAAGAAGATGGAA
GACTTGCGGATGGGTGAAGAAGTTGTTTCAGATAGAGGTTTGGAACGAAT
CATGTTATTCACGCACGAAAACAAATGGATTCGTGCAGAATTTGTACGAC
TTTACGCGGGTAACGAAAGTCTAACTGCTACCGGGGGACACATGATATAT
GTGCGGAACGGTTTAAGACGCGCTCGAGAAGTGGAAGTTGGTGACATGTT
ACGCAAAGTGGATGGAGACGCAAGAGTGTGGAAGAAAGAATGGGTGATTG
AGCGCGGTCTTTTCAACCCTCACACCGAAGGAGGTAACATCGTTGTGAAC
GGCTTCGTAACGAGTTGCTACACAGAAAGTGTGGAGACAATCACAGCACA
TGCGTTATTGAGCGTGGTGAGATTGTTAGGACGATGGAGAAGAATGGCAC
GGTTGATGGGTGCACTTGGAAGTGGTATTGAGTATATGGCGCGCTTCTGT
GGGACTGTAGCTAGAACGGCGGGGGCCGCAAGCAGCGCGCTGGCATGA
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protein sequence of Ggra733.t1

>Ggra733.t1 ID=Ggra733.t1|Name=Ggra733.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=516bp
MSVQFSVLCFMLVLLLAGNQAVPKPTTFSGPLQLENTSVRAFTPSEFTAG
YELMVQYRHGSVPSCPHRIQYTGTPTEEDSQLLLKHTDMKISESDTLNPI
NCTDNGVQRLALSTKLRGQTLADFVEQVDKSLDKSILYKSVAQQLSGARY
YVSVEDSVRVCGQGWFSSAETYFFFDESKLVQLQVVKKVIQDDPVVITLP
LIGNIRYMVVAREGTTCIYRVESDVQSIIRNSPRPSDSPSVTPSPSPSTS
PIPPMPSPSASVTTSASAAPSPSASMVPTPSSSSVASPSPSGSSSVLPAP
SSSASISPSGNNDENNIDGDDRGENSVDGSSTCFPASAKVRTRNGYKKME
DLRMGEEVVSDRGLERIMLFTHENKWIRAEFVRLYAGNESLTATGGHMIY
VRNGLRRAREVEVGDMLRKVDGDARVWKKEWVIERGLFNPHTEGGNIVVN
GFVTSCYTESVETITAHALLSVVRLLGRWRRMARLMGALGSGIEYMARFC
GTVARTAGAASSALA*
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mRNA from alignment at tig00000204_pilon:43936..46671+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra733.t1 ID=Ggra733.t1|Name=Ggra733.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2736bp|location=Sequence derived from alignment at tig00000204_pilon:43936..46671+ (Gracilaria gracilis GNS1m male)
ATGTCAGTCCAGTTCTCAGTTCTATGCTTCATGCTTGTTTTGCTCCTCGC
AGGCAATCAAGCTGTTCCAAAGCCTACAACATTTTCCGGACCCCTTCAAC
TGGAAAACACCTCTGTTCGAGCCTTTACGCCCTCAGAGTTCACGGCCGGC
TACGAGCTCATGGTTCAATATCGACACGGTTCGGTTCCGTCCTGCCCGCA
CAGAATCCAGTACACAGGAACTCCAACAGAAGAAGATTCTCAACTTCTCC
TAAAACATACAGATATGAAAATATCTGAGTCTGATACATTGAACCCAATC
AACTGTACAGATAACGGAGTGCAACGACTAGCGCTGTCAACCAAGCTCCG
AGGCCAAACTCTTGCCGACTTCGTGGAACAAGTAGACAAAAGCCTTGACA
AGTCAATCTTGTACAAAAGCGTTGCTCAACAGCTTTCCGGGGCAAGATAT
TATGTATCAGTGGAAGATTCTGTGCGCGTCTGTGGTCAGGGCTGGTTTAG
TTCAGCGGAAACCTACTTCTTCTTTGATGAATCCAAATTGGTTCAATTGC
AGGTTGTGAAGAAAGTTATTCAAGATGATCCGGTTGTAATCACTTTGCCA
CTTATAGGAAATATTCGATACATGGTGGTAGCCAGGGAAGGAACCACATG
TATCTATCGGGTTGAGTCTGATGTCCAGAGCATCATCAGGAATTCGCCAA
GGCCGTCGGATTCTCCGTCTGTAACGGTAAGTTTCCACCATCTTTTTCGC
GAGCATTATGTTAAGAGAGGACAGATATCTGACAACGTGTGAATGACCCT
TCTTGATTTGATACAGCCGTCCCCGTCGCCGTCAACATCTCCGATACCAC
CCAGTGCGTCGGcatcgccctcaatatctgcatctcaatcgccaactcca
tctttatctgcttccccttcAATAACTTCATCCGCCTCGATGCCACCAAC
AAAAACGCCGACCCCCAGTTTGACTCCTTCGATGAGCAACTCGCCATCGG
TAAGTACAGTGCCCTCTCCATCCGCCTCTGTTACTACCTCTGCAAGCGCA
GCACCATCTCCAAGCGCTTCAATGGTACCCACACCGAGCTCCAGTTCAGT
GGCGTCACCGTCTCCCTCTGGTTCCAGTAGCGTACTACCTGCCCCATCTT
CGTCGGCCTCCATTTCTCCATCTGTAAGTGCATCCGCTTCCTCCTCCGCA
AGTGCTTCTATGAGTTTTACTTCGTCGCCGTCTCCCTCAAGTAGCACTAT
CCCGAGTTCGCCGAGTGCTTCGTCGTCTCAGTCTGTCTCGCCGTCAAACA
GTGTGACCCCTACTGCTTCGTTGTCGGAAAGCCCATTGCCCTCCTCCACG
ACTTCGATGATGCCAAGTATGTCGTCCTCACAAAGTGTGGGACCTTCAAC
GACGCCTACCACAACTATGGCACCCTCTGTGACCGCATCGAGCAGCAGTA
TTAGTTTACCTTCAGCAACGCCGACCACAACTGCAACACCTTCAGTATCG
ATATCGGTTACGGATGCATTGCCTACTCCAACAATCTCGGCTTCAAATTC
ACCAAGCGCGTCGTACAGTGTGGAGCCCTCATCCTCGACGACTGCGACTC
CTTCGTCTTCGGCTTCCCCTCTGATATCTTCAAGTGCGTCGGCTTCCCCT
CTGATATCTTCAAGTGCGTCGGCTTCCCCTCTGATATCTTCAAGTGTGTC
GGCTTCCCCTCTGCTATCTTCAAGTGCGTCGGCTTCTCCAAGCGGCTTGG
CATCACCATCGATCTCTGCAGCTGTACCGTCTGCAAGCGTTTCTGCAAGT
CAATCAGCAGCGTCGCCATCTGTAGTAGCTTCTTCTACAGCTATTTTGGA
GAGCACATCGCCTTCGATGACGGGTTCTCCGAGCTTCTCCGCGTCTGCTC
CAATGACTGTGACACCGATTGCATCCCAAACTGTTTCGACGAGTCCGAAA
GCAAGTGTTCAATCATCTGCTACAACCTTCCCATCACCATCGGAGACACC
GAAGATTAGTATATCACAAGTAGTCTCATCCACATCGCCATCGGTATCGA
TGAGCGCAGGAACTCTTAGTGCATCTCCAACAATTTCACTAACTCCTTCG
CCGTCTTCTTCACAGGGAAACAACGATGAGAACAACATCGATGGAGATGA
TCGGGGTGAAAATAGCGTAGATGGTAGTAGTACATGCTTCCCAGCCTCAG
CCAAGGTGAGGACAAGGAATGGATATAAGAAGATGGAAGACTTGCGGATG
GGTGAAGAAGTTGTTTCAGATAGAGGTTTGGAACGAATCATGTTATTCAC
GCACGAAAACAAATGGATTCGTGCAGAATTTGTACGACTTTACGCGGGTA
ACGAAAGTCTAACTGCTACCGGGGGACACATGATATATGTGCGGAACGGT
TTAAGACGCGCTCGAGAAGTGGAAGTTGGTGACATGTTACGCAAAGTGGA
TGGAGACGCAAGAGTGTGGAAGAAAGAATGGGTGATTGAGCGCGGTCTTT
TCAACCCTCACACCGAAGGAGGTAACATCGTTGTGAACGGCTTCGTAACG
AGTTGCTACACAGAAAGTGTGGAGACAATCACAGCACATGCGTTATTGAG
CGTGGTGAGATTGTTAGGACGATGGAGAAGAATGGCACGGTTGATGGGTG
CACTTGGAAGTGGTATTGAGTATATGGCGCGCTTCTGTGGGACTGTAGCT
AGAACGGCGGGGGCCGCAAGCAGCGCGCTGGCATGA
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Coding sequence (CDS) from alignment at tig00000204_pilon:43936..46671+

>Ggra733.t1 ID=Ggra733.t1|Name=Ggra733.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1548bp|location=Sequence derived from alignment at tig00000204_pilon:43936..46671+ (Gracilaria gracilis GNS1m male)
ATGTCAGTCCAGTTCTCAGTTCTATGCTTCATGCTTGTTTTGCTCCTCGC
AGGCAATCAAGCTGTTCCAAAGCCTACAACATTTTCCGGACCCCTTCAAC
TGGAAAACACCTCTGTTCGAGCCTTTACGCCCTCAGAGTTCACGGCCGGC
TACGAGCTCATGGTTCAATATCGACACGGTTCGGTTCCGTCCTGCCCGCA
CAGAATCCAGTACACAGGAACTCCAACAGAAGAAGATTCTCAACTTCTCC
TAAAACATACAGATATGAAAATATCTGAGTCTGATACATTGAACCCAATC
AACTGTACAGATAACGGAGTGCAACGACTAGCGCTGTCAACCAAGCTCCG
AGGCCAAACTCTTGCCGACTTCGTGGAACAAGTAGACAAAAGCCTTGACA
AGTCAATCTTGTACAAAAGCGTTGCTCAACAGCTTTCCGGGGCAAGATAT
TATGTATCAGTGGAAGATTCTGTGCGCGTCTGTGGTCAGGGCTGGTTTAG
TTCAGCGGAAACCTACTTCTTCTTTGATGAATCCAAATTGGTTCAATTGC
AGGTTGTGAAGAAAGTTATTCAAGATGATCCGGTTGTAATCACTTTGCCA
CTTATAGGAAATATTCGATACATGGTGGTAGCCAGGGAAGGAACCACATG
TATCTATCGGGTTGAGTCTGATGTCCAGAGCATCATCAGGAATTCGCCAA
GGCCGTCGGATTCTCCGTCTGTAACGCCGTCCCCGTCGCCGTCAACATCT
CCGATACCACCCATGCCCTCTCCATCCGCCTCTGTTACTACCTCTGCAAG
CGCAGCACCATCTCCAAGCGCTTCAATGGTACCCACACCGAGCTCCAGTT
CAGTGGCGTCACCGTCTCCCTCTGGTTCCAGTAGCGTACTACCTGCCCCA
TCTTCGTCGGCCTCCATTTCTCCATCTGGAAACAACGATGAGAACAACAT
CGATGGAGATGATCGGGGTGAAAATAGCGTAGATGGTAGTAGTACATGCT
TCCCAGCCTCAGCCAAGGTGAGGACAAGGAATGGATATAAGAAGATGGAA
GACTTGCGGATGGGTGAAGAAGTTGTTTCAGATAGAGGTTTGGAACGAAT
CATGTTATTCACGCACGAAAACAAATGGATTCGTGCAGAATTTGTACGAC
TTTACGCGGGTAACGAAAGTCTAACTGCTACCGGGGGACACATGATATAT
GTGCGGAACGGTTTAAGACGCGCTCGAGAAGTGGAAGTTGGTGACATGTT
ACGCAAAGTGGATGGAGACGCAAGAGTGTGGAAGAAAGAATGGGTGATTG
AGCGCGGTCTTTTCAACCCTCACACCGAAGGAGGTAACATCGTTGTGAAC
GGCTTCGTAACGAGTTGCTACACAGAAAGTGTGGAGACAATCACAGCACA
TGCGTTATTGAGCGTGGTGAGATTGTTAGGACGATGGAGAAGAATGGCAC
GGTTGATGGGTGCACTTGGAAGTGGTATTGAGTATATGGCGCGCTTCTGT
GGGACTGTAGCTAGAACGGCGGGGGCCGCAAGCAGCGCGCTGGCATGA
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