Ggra7324.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7324.t1
Unique Name	Ggra7324.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	513

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000871_pilon	contig	tig00000871_pilon:772754..774292 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7324	Ggra7324	Gracilaria gracilis GNS1m male	gene	tig00000871_pilon 772754..774292 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7324.t1.stop1	Ggra7324.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000871_pilon 772754..772756 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7324.t1.CDS1	Ggra7324.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000871_pilon 772754..774292 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7324.t1.exon1	Ggra7324.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000871_pilon 772754..774292 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7324.t1.start1	Ggra7324.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000871_pilon 774290..774292 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7324.t1	Ggra7324.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000871_pilon 772754..774292 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000871_pilon:772754..774292-
coding sequence from alignment at tig00000871_pilon:772754..774292-

mRNA sequence

>Ggra7324.t1 ID=Ggra7324.t1|Name=Ggra7324.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=513bp
MDAIDADIAWEECIPDLPLDTNNLPPLNALSTDSTHNLDLLDLLSFESDK
TPDPIATPGRLPSVESLSTSTDPLSLAPEPFPRPQETLSQCTEHSTITPS
VTSPPHMVHLASDQSTVGSRISSPSHTTSEEIPSPQQSAPASPQPTKRYT
SNKQRPRRQKRSARKKETESNSNDSLVLELTTRLASAGAETAALRKRVAS
LTQENRSLRAALDHANARLVAVAQAAAAAPPTALQQPVVVGLAQMSQEVA
GRISGALTINDVEEAPKKKRKRVTGAATTMACVMFMWGAFVGTPGLLKAA
TKVFGGEDSNLPAVWKGGSQAASSVPAVPVTRMQESWQPNCMTVLQELPS
KSTDDVVEPMDIDSIKVKQETVLVDEKIDKGEKVPAEKMFVDMRDEDAAK
VVALADVRTRSQPQYSYVLCRDAKAAIDNIRACSESKKNGEPCGPPHTIS
LILPASTAGMEDENSTDSLPALAEVQCNIMSIARIPVDSMNDGSSYGRVI
ATMPQSGTVIRG*

spliced messenger RNA

>Ggra7324.t1 ID=Ggra7324.t1|Name=Ggra7324.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1539bp|location=Sequence derived from alignment at tig00000871_pilon:772754..774292- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCCATTGACGCCGACATTGCGTGGGAGGAGTGCATTCCCGACCT
TCCTCTTGACACGAACAATCTTCCTCCGCTTAACGCTCTTTCCACCGACT
CCACTCACAACCTCGACTTGCTCGACCTTCTCAGCTTCGAATCCGACAAG
ACACCCGACCCCATCGCCACCCCCGGAAGACTCCCTTCCGTCGAATCGCT
CTCCACTTCAACCGACCCCCTCAGTTTAGCCCCTGAACCTTTCCCTCGAC
CTCAAGAAACTCTCTCACAATGCACAGAACATTCAACCATCACCCCAAGT
GTAACATCACCACCTCACATGGTCCACCTCGCCTCGGACCAATCCACAGT
CGGTTCTCGCATATCATCACCGTCGCACACCACATCGGAGGAAATTCCAT
CACCACAACAGTCAGCACCCGCCTCCCCCCAGCCCACGAAACGCTACACC
TCTAACAAGCAGAGACCCCGTCGACAGAAACGCTCGGCAAGGAAGAAGGA
AACTGAGTCCAATTCAAATGACTCTCTTGTTTTGGAACTCACCACGCGTC
TCGCCTCGGCTGGGGCCGAGACCGCTGCGCTTCGCAAGCGGGTAGCCTCT
CTCACGCAAGAGAACCGATCTCTTCGCGCCGCACTTGACCATGCGAATGC
ACGCTTGGTGGCTGTTGCTCAAGCTGCCGCTGCTGCTCCGCCTACTGCTC
TTCAACAGCCTGTTGTTGTGGGTCTTGCTCAGATGTCTCAAGAAGTTGCC
GGTCGTATCTCTGGCGCTCTTACGATAAACGACGTGGAGGAGGCACCGAA
GAAAAAGAGAAAGAGAGTTACTGGAGCTGCTACCACGATGGCGTGTGTCA
TGTTTATGTGGGGTGCCTTTGTTGGTACGCCTGGATTGCTAAAGGCCGCC
ACTAAAGTGTTTGGCGGTGAAGACTCGAATTTACCTGCTGTATGGAAGGG
TGGCAGCCAAGCTGCTTCATCTGTTCCTGCCGTCCCGGTTACCCGTATGC
AAGAGAGCTGGCAGCCAAATTGTATGACAGTTCTTCAGGAATTACCGAGT
AAGAGTACTGATGATGTAGTTGAACCCATGGACATTGACTCCATCAAAGT
CAAGCAAGAGACTGTTCTCGTCGATGAGAAGATCGATAAGGGCGAAAAGG
TTCCTGCGGAGAAAATGTTCGTGGACATGCGAGATGAGGATGCTGCGAAG
GTTGTTGCCTTGGCAGATGTTCGCACCCGCAGTCAGCCTCAGTACTCATA
CGTGCTTTGCCGAGATGCAAAGGCTGCGATCGACAATATCAGAGCTTGTT
CTGAGAGCAAGAAGAACGGGGAACCCTGCGGCCCCCCTCACACGATATCG
CTGATTTTACCCGCTTCAACCGCTGGAATGGAAGACGAGAATAGCACGGA
CAGCCTTCCCGCACTAGCCGAAGTCCAGTGTAACATCATGTCCATCGCGA
GAATACCTGTCGATTCCATGAATGACGGAAGCTCATATGGAAGAGTTATT
GCTACTATGCCACAAAGCGGAACCGTCATTCGTGGCTAG

protein sequence of Ggra7324.t1

>Ggra7324.t1 ID=Ggra7324.t1|Name=Ggra7324.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=513bp
MDAIDADIAWEECIPDLPLDTNNLPPLNALSTDSTHNLDLLDLLSFESDK
TPDPIATPGRLPSVESLSTSTDPLSLAPEPFPRPQETLSQCTEHSTITPS
VTSPPHMVHLASDQSTVGSRISSPSHTTSEEIPSPQQSAPASPQPTKRYT
SNKQRPRRQKRSARKKETESNSNDSLVLELTTRLASAGAETAALRKRVAS
LTQENRSLRAALDHANARLVAVAQAAAAAPPTALQQPVVVGLAQMSQEVA
GRISGALTINDVEEAPKKKRKRVTGAATTMACVMFMWGAFVGTPGLLKAA
TKVFGGEDSNLPAVWKGGSQAASSVPAVPVTRMQESWQPNCMTVLQELPS
KSTDDVVEPMDIDSIKVKQETVLVDEKIDKGEKVPAEKMFVDMRDEDAAK
VVALADVRTRSQPQYSYVLCRDAKAAIDNIRACSESKKNGEPCGPPHTIS
LILPASTAGMEDENSTDSLPALAEVQCNIMSIARIPVDSMNDGSSYGRVI
ATMPQSGTVIRG*

mRNA from alignment at tig00000871_pilon:772754..774292-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7324.t1 ID=Ggra7324.t1|Name=Ggra7324.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1539bp|location=Sequence derived from alignment at tig00000871_pilon:772754..774292- (Gracilaria gracilis GNS1m male)
ATGGACGCCATTGACGCCGACATTGCGTGGGAGGAGTGCATTCCCGACCT
TCCTCTTGACACGAACAATCTTCCTCCGCTTAACGCTCTTTCCACCGACT
CCACTCACAACCTCGACTTGCTCGACCTTCTCAGCTTCGAATCCGACAAG
ACACCCGACCCCATCGCCACCCCCGGAAGACTCCCTTCCGTCGAATCGCT
CTCCACTTCAACCGACCCCCTCAGTTTAGCCCCTGAACCTTTCCCTCGAC
CTCAAGAAACTCTCTCACAATGCACAGAACATTCAACCATCACCCCAAGT
GTAACATCACCACCTCACATGGTCCACCTCGCCTCGGACCAATCCACAGT
CGGTTCTCGCATATCATCACCGTCGCACACCACATCGGAGGAAATTCCAT
CACCACAACAGTCAGCACCCGCCTCCCCCCAGCCCACGAAACGCTACACC
TCTAACAAGCAGAGACCCCGTCGACAGAAACGCTCGGCAAGGAAGAAGGA
AACTGAGTCCAATTCAAATGACTCTCTTGTTTTGGAACTCACCACGCGTC
TCGCCTCGGCTGGGGCCGAGACCGCTGCGCTTCGCAAGCGGGTAGCCTCT
CTCACGCAAGAGAACCGATCTCTTCGCGCCGCACTTGACCATGCGAATGC
ACGCTTGGTGGCTGTTGCTCAAGCTGCCGCTGCTGCTCCGCCTACTGCTC
TTCAACAGCCTGTTGTTGTGGGTCTTGCTCAGATGTCTCAAGAAGTTGCC
GGTCGTATCTCTGGCGCTCTTACGATAAACGACGTGGAGGAGGCACCGAA
GAAAAAGAGAAAGAGAGTTACTGGAGCTGCTACCACGATGGCGTGTGTCA
TGTTTATGTGGGGTGCCTTTGTTGGTACGCCTGGATTGCTAAAGGCCGCC
ACTAAAGTGTTTGGCGGTGAAGACTCGAATTTACCTGCTGTATGGAAGGG
TGGCAGCCAAGCTGCTTCATCTGTTCCTGCCGTCCCGGTTACCCGTATGC
AAGAGAGCTGGCAGCCAAATTGTATGACAGTTCTTCAGGAATTACCGAGT
AAGAGTACTGATGATGTAGTTGAACCCATGGACATTGACTCCATCAAAGT
CAAGCAAGAGACTGTTCTCGTCGATGAGAAGATCGATAAGGGCGAAAAGG
TTCCTGCGGAGAAAATGTTCGTGGACATGCGAGATGAGGATGCTGCGAAG
GTTGTTGCCTTGGCAGATGTTCGCACCCGCAGTCAGCCTCAGTACTCATA
CGTGCTTTGCCGAGATGCAAAGGCTGCGATCGACAATATCAGAGCTTGTT
CTGAGAGCAAGAAGAACGGGGAACCCTGCGGCCCCCCTCACACGATATCG
CTGATTTTACCCGCTTCAACCGCTGGAATGGAAGACGAGAATAGCACGGA
CAGCCTTCCCGCACTAGCCGAAGTCCAGTGTAACATCATGTCCATCGCGA
GAATACCTGTCGATTCCATGAATGACGGAAGCTCATATGGAAGAGTTATT
GCTACTATGCCACAAAGCGGAACCGTCATTCGTGGCTAG

Coding sequence (CDS) from alignment at tig00000871_pilon:772754..774292-

>Ggra7324.t1 ID=Ggra7324.t1|Name=Ggra7324.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1539bp|location=Sequence derived from alignment at tig00000871_pilon:772754..774292- (Gracilaria gracilis GNS1m male)
ATGGACGCCATTGACGCCGACATTGCGTGGGAGGAGTGCATTCCCGACCT
TCCTCTTGACACGAACAATCTTCCTCCGCTTAACGCTCTTTCCACCGACT
CCACTCACAACCTCGACTTGCTCGACCTTCTCAGCTTCGAATCCGACAAG
ACACCCGACCCCATCGCCACCCCCGGAAGACTCCCTTCCGTCGAATCGCT
CTCCACTTCAACCGACCCCCTCAGTTTAGCCCCTGAACCTTTCCCTCGAC
CTCAAGAAACTCTCTCACAATGCACAGAACATTCAACCATCACCCCAAGT
GTAACATCACCACCTCACATGGTCCACCTCGCCTCGGACCAATCCACAGT
CGGTTCTCGCATATCATCACCGTCGCACACCACATCGGAGGAAATTCCAT
CACCACAACAGTCAGCACCCGCCTCCCCCCAGCCCACGAAACGCTACACC
TCTAACAAGCAGAGACCCCGTCGACAGAAACGCTCGGCAAGGAAGAAGGA
AACTGAGTCCAATTCAAATGACTCTCTTGTTTTGGAACTCACCACGCGTC
TCGCCTCGGCTGGGGCCGAGACCGCTGCGCTTCGCAAGCGGGTAGCCTCT
CTCACGCAAGAGAACCGATCTCTTCGCGCCGCACTTGACCATGCGAATGC
ACGCTTGGTGGCTGTTGCTCAAGCTGCCGCTGCTGCTCCGCCTACTGCTC
TTCAACAGCCTGTTGTTGTGGGTCTTGCTCAGATGTCTCAAGAAGTTGCC
GGTCGTATCTCTGGCGCTCTTACGATAAACGACGTGGAGGAGGCACCGAA
GAAAAAGAGAAAGAGAGTTACTGGAGCTGCTACCACGATGGCGTGTGTCA
TGTTTATGTGGGGTGCCTTTGTTGGTACGCCTGGATTGCTAAAGGCCGCC
ACTAAAGTGTTTGGCGGTGAAGACTCGAATTTACCTGCTGTATGGAAGGG
TGGCAGCCAAGCTGCTTCATCTGTTCCTGCCGTCCCGGTTACCCGTATGC
AAGAGAGCTGGCAGCCAAATTGTATGACAGTTCTTCAGGAATTACCGAGT
AAGAGTACTGATGATGTAGTTGAACCCATGGACATTGACTCCATCAAAGT
CAAGCAAGAGACTGTTCTCGTCGATGAGAAGATCGATAAGGGCGAAAAGG
TTCCTGCGGAGAAAATGTTCGTGGACATGCGAGATGAGGATGCTGCGAAG
GTTGTTGCCTTGGCAGATGTTCGCACCCGCAGTCAGCCTCAGTACTCATA
CGTGCTTTGCCGAGATGCAAAGGCTGCGATCGACAATATCAGAGCTTGTT
CTGAGAGCAAGAAGAACGGGGAACCCTGCGGCCCCCCTCACACGATATCG
CTGATTTTACCCGCTTCAACCGCTGGAATGGAAGACGAGAATAGCACGGA
CAGCCTTCCCGCACTAGCCGAAGTCCAGTGTAACATCATGTCCATCGCGA
GAATACCTGTCGATTCCATGAATGACGGAAGCTCATATGGAAGAGTTATT
GCTACTATGCCACAAAGCGGAACCGTCATTCGTGGCTAG