Ggra7238.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7238.t1
Unique NameGgra7238.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length326
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:365730..366942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36080.S2JPV0
PFAMszf-RING_5
Max annot lvl4751|Fungi
KEGG koko:K10639
Evalue0.000682
EggNOG OGs29EAY@1|root,2RMFV@2759|Eukaryota,38HMW@33154|Opisthokonta,3P4U0@4751|Fungi
EC2.3.2.27
Descriptionchiasma assembly
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7238Ggra7238Gracilaria gracilis GNS1m malegenetig00000871_pilon 365730..366942 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7238.t1Ggra7238.t1Gracilaria gracilis GNS1m malepolypeptidetig00000871_pilon 365730..366942 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7238.t1.stop1Ggra7238.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000871_pilon 365730..365732 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7238.t1.CDS1Ggra7238.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000871_pilon 365730..366231 -
Ggra7238.t1.CDS2Ggra7238.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000871_pilon 366297..366400 -
Ggra7238.t1.CDS3Ggra7238.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000871_pilon 366476..366771 -
Ggra7238.t1.CDS4Ggra7238.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000871_pilon 366867..366942 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7238.t1.exon1Ggra7238.t1.exon1Gracilaria gracilis GNS1m maleexontig00000871_pilon 365730..366231 -
Ggra7238.t1.exon2Ggra7238.t1.exon2Gracilaria gracilis GNS1m maleexontig00000871_pilon 366297..366400 -
Ggra7238.t1.exon3Ggra7238.t1.exon3Gracilaria gracilis GNS1m maleexontig00000871_pilon 366476..366771 -
Ggra7238.t1.exon4Ggra7238.t1.exon4Gracilaria gracilis GNS1m maleexontig00000871_pilon 366867..366942 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7238.t1.intron1Ggra7238.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000871_pilon 366232..366296 -
Ggra7238.t1.intron2Ggra7238.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000871_pilon 366401..366475 -
Ggra7238.t1.intron3Ggra7238.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000871_pilon 366772..366866 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7238.t1.start1Ggra7238.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000871_pilon 366940..366942 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7238.t1 ID=Ggra7238.t1|Name=Ggra7238.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=326bp
MHCLKCGEEITEKVAVYTKSCHHTFCQKCSNDAFKKELSCPLCDTVLPKD
GIGSIILVPDSNDIKKAGSRIYGFQPEQMCEVLKLGLQFWAKQNQSESLL
HEREFSSTQRRMVELEEQNAKLTRALNEERLKKNSLQNEREALQKTVSDL
EARYAQKARSMRKLTELYNELRQVHRRLEVDLRGIRDSNEFEVDAVPGSE
FEVNTHGVSGNMSGRDGNESYRMNDEQVERSVRGSQTAREHRRTSRDYND
RDHGNRDEGSTSAARRIPTPGDPLFNFATNRSPTANIRINVPAKNTGGHG
ARRRRYHVDPRPDIEDENSHRDRRG*
back to top

spliced messenger RNA

>Ggra7238.t1 ID=Ggra7238.t1|Name=Ggra7238.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=978bp|location=Sequence derived from alignment at tig00000871_pilon:365730..366942- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTGTCTCAAGTGCGGGGAAGAAATCACTGAAAAGGTGGCCGTCTA
TACCAAATCTTGTCATCATACCTTCTGCCAAAAATGCAGTAATGATGCCT
TCAAGAAGGAACTTTCATGTCCGTTGTGCGACACCGTACTTCCAAAGGAT
GGAATCGGATCAATCATTCTTGTGCCAGACTCTAATGACATTAAGAAAGC
CGGGTCCAGGATATACGGATTTCAGCCGGAGCAAATGTGCGAAGTGCTTA
AACTCGGGCTGCAGTTTTGGGCGAAACAGAATCAAAGTGAATCTCTTTTG
CATGAACGTGAATTCAGCTCCACCCAACGACGAATGGTAGAGCTTGAAGA
ACAAAATGCAAAACTCACCAGGGCGCTAAACGAAGAGCGATTGAAGAAAA
ACTCCTTGCAGAATGAAAGGGAAGCATTGCAAAAGACGGTTTCAGACCTC
GAAGCGAGGTATGCTCAAAAGGCGAGGTCCATGAGGAAACTCACCGAACT
GTACAACGAACTTCGTCAAGTTCATAGACGCCTTGAAGTTGATCTCCGTG
GCATACGAGACTCAAACGAGTTCGAAGTGGATGCCGTTCCAGGAAGTGAG
TTTGAAGTGAACACTCATGGGGTTAGCGGCAATATGTCTGGGAGGGATGG
AAATGAAAGTTACAGAATGAATGACGAACAAGTCGAGAGAAGTGTCAGAG
GGTCACAGACTGCCCGAGAGCATCGCAGAACATCCAGAGATTATAATGAC
CGAGATCACGGCAACCGTGACGAAGGCTCAACCTCTGCGGCAAGAAGGAT
ACCGACTCCTGGAGATCCACTGTTTAATTTTGCCACAAACCGCTCCCCTA
CCGCCAATATTAGGATTAATGTGCCCGCGAAGAATACTGGAGGTCATGGG
GCTCGTCGACGCCGTTATCACGTTGATCCTAGGCCTGATATCGAAGACGA
AAACAGCCATCGGGATCGACGAGGATAA
back to top

protein sequence of Ggra7238.t1

>Ggra7238.t1 ID=Ggra7238.t1|Name=Ggra7238.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=326bp
MHCLKCGEEITEKVAVYTKSCHHTFCQKCSNDAFKKELSCPLCDTVLPKD
GIGSIILVPDSNDIKKAGSRIYGFQPEQMCEVLKLGLQFWAKQNQSESLL
HEREFSSTQRRMVELEEQNAKLTRALNEERLKKNSLQNEREALQKTVSDL
EARYAQKARSMRKLTELYNELRQVHRRLEVDLRGIRDSNEFEVDAVPGSE
FEVNTHGVSGNMSGRDGNESYRMNDEQVERSVRGSQTAREHRRTSRDYND
RDHGNRDEGSTSAARRIPTPGDPLFNFATNRSPTANIRINVPAKNTGGHG
ARRRRYHVDPRPDIEDENSHRDRRG*
back to top

mRNA from alignment at tig00000871_pilon:365730..366942-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7238.t1 ID=Ggra7238.t1|Name=Ggra7238.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1213bp|location=Sequence derived from alignment at tig00000871_pilon:365730..366942- (Gracilaria gracilis GNS1m male)
ATGCATTGTCTCAAGTGCGGGGAAGAAATCACTGAAAAGGTGGCCGTCTA
TACCAAATCTTGTCATCATACCTTCTGTACGTTCAATACCAGTCGCGCAT
GTTATTCTTCAATTCCATCCCCTGCAGGCAGCCAACTGATTTCCTGTGTT
GCCTCGGCCGCATTCACACAGGCCAAAAATGCAGTAATGATGCCTTCAAG
AAGGAACTTTCATGTCCGTTGTGCGACACCGTACTTCCAAAGGATGGAAT
CGGATCAATCATTCTTGTGCCAGACTCTAATGACATTAAGAAAGCCGGGT
CCAGGATATACGGATTTCAGCCGGAGCAAATGTGCGAAGTGCTTAAACTC
GGGCTGCAGTTTTGGGCGAAACAGAATCAAAGTGAATCTCTTTTGCATGA
ACGTGAATTCAGCTCCACCCAACGACGAATGGTAGAGCTTGAAGAACAAA
ATGCAAAACTCACCAGGGTTTGTTAACAAATTCCCATTTCTGCGCTTCGG
CTTGGTATCCGAATTCTAACAAACAGTCTGTCCATATGTTAGGCGCTAAA
CGAAGAGCGATTGAAGAAAAACTCCTTGCAGAATGAAAGGGAAGCATTGC
AAAAGACGGTTTCAGACCTCGAAGCGAGGTATGCTCAAAAGGCGAGGTAC
GGAATCCTTCCTGGTTGCATCAAACATAACCACAGTTCCTGACTAACAAG
TGTTTCGACAGGTCCATGAGGAAACTCACCGAACTGTACAACGAACTTCG
TCAAGTTCATAGACGCCTTGAAGTTGATCTCCGTGGCATACGAGACTCAA
ACGAGTTCGAAGTGGATGCCGTTCCAGGAAGTGAGTTTGAAGTGAACACT
CATGGGGTTAGCGGCAATATGTCTGGGAGGGATGGAAATGAAAGTTACAG
AATGAATGACGAACAAGTCGAGAGAAGTGTCAGAGGGTCACAGACTGCCC
GAGAGCATCGCAGAACATCCAGAGATTATAATGACCGAGATCACGGCAAC
CGTGACGAAGGCTCAACCTCTGCGGCAAGAAGGATACCGACTCCTGGAGA
TCCACTGTTTAATTTTGCCACAAACCGCTCCCCTACCGCCAATATTAGGA
TTAATGTGCCCGCGAAGAATACTGGAGGTCATGGGGCTCGTCGACGCCGT
TATCACGTTGATCCTAGGCCTGATATCGAAGACGAAAACAGCCATCGGGA
TCGACGAGGATAA
back to top

Coding sequence (CDS) from alignment at tig00000871_pilon:365730..366942-

>Ggra7238.t1 ID=Ggra7238.t1|Name=Ggra7238.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=978bp|location=Sequence derived from alignment at tig00000871_pilon:365730..366942- (Gracilaria gracilis GNS1m male)
ATGCATTGTCTCAAGTGCGGGGAAGAAATCACTGAAAAGGTGGCCGTCTA
TACCAAATCTTGTCATCATACCTTCTGCCAAAAATGCAGTAATGATGCCT
TCAAGAAGGAACTTTCATGTCCGTTGTGCGACACCGTACTTCCAAAGGAT
GGAATCGGATCAATCATTCTTGTGCCAGACTCTAATGACATTAAGAAAGC
CGGGTCCAGGATATACGGATTTCAGCCGGAGCAAATGTGCGAAGTGCTTA
AACTCGGGCTGCAGTTTTGGGCGAAACAGAATCAAAGTGAATCTCTTTTG
CATGAACGTGAATTCAGCTCCACCCAACGACGAATGGTAGAGCTTGAAGA
ACAAAATGCAAAACTCACCAGGGCGCTAAACGAAGAGCGATTGAAGAAAA
ACTCCTTGCAGAATGAAAGGGAAGCATTGCAAAAGACGGTTTCAGACCTC
GAAGCGAGGTATGCTCAAAAGGCGAGGTCCATGAGGAAACTCACCGAACT
GTACAACGAACTTCGTCAAGTTCATAGACGCCTTGAAGTTGATCTCCGTG
GCATACGAGACTCAAACGAGTTCGAAGTGGATGCCGTTCCAGGAAGTGAG
TTTGAAGTGAACACTCATGGGGTTAGCGGCAATATGTCTGGGAGGGATGG
AAATGAAAGTTACAGAATGAATGACGAACAAGTCGAGAGAAGTGTCAGAG
GGTCACAGACTGCCCGAGAGCATCGCAGAACATCCAGAGATTATAATGAC
CGAGATCACGGCAACCGTGACGAAGGCTCAACCTCTGCGGCAAGAAGGAT
ACCGACTCCTGGAGATCCACTGTTTAATTTTGCCACAAACCGCTCCCCTA
CCGCCAATATTAGGATTAATGTGCCCGCGAAGAATACTGGAGGTCATGGG
GCTCGTCGACGCCGTTATCACGTTGATCCTAGGCCTGATATCGAAGACGA
AAACAGCCATCGGGATCGACGAGGATAA
back to top